1YIJW

Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 49
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1yijW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1yijW01
5GAHa 3CCRW 5JVHW 1W2BV 3G71W 1VQMW 3CCLW 1VQKW 4WFBW 5DM7W 3CF5W 1VQ6W 1Q81X 1VQPW 2QA4W 1NJIX 3CCEW 3CC4W 1K73X 1K8AX 1KC8X 1QVGV 1QVFV 1JJ2V 2QEXW 1VQLW 4IO9W 1VQ7W 1KQSV 3CC7W 3CCVW 3CCQW 3CD6W 1Q82X 5GAGa 1VQ9W 1K9MX 1VQ8W 1YJWW 3CMAW 3I56W 1YJNW 4WFAW 1YIJW 1YJ9W 3J7ZZ 1VQ4W 2OTJW 3I55W 1S72W 1VQ5W 1Q7YX 2ZJPW 3G4SW 5JVGW 1M90X 4WF9W 3CCJW 1YI2W 3CCMW 4U67W 1N8RX 5DM6W 1YHQW 2ZJRW 4WCEW 3CPWV 1VQNW 3G6EW 1KD1X 3CCUW 3CXCV 4IOAW 2ZJQW 1M1KX 1BXYA 5HL7W 4WFNW 3DLLW 3PIPW 1Q86X 4IOCW 3OW2V 5GAEa 1YITW 3CCSW 2OTLW 4UY8Z 3CMEW 1VQOW 5GADa 3PIOW 3CC2W
chains in the Genus database with same CATH superfamily
5GAHa 3CCRW 5JVHW 1W2BV 3G71W 1VQMW 3CCLW 1VQKW 4DKIA 4WFBW 1MWRA 1VQQA 4YJXA 5DM7W 3CF5W 1VQ6W 1Q81X 1LZWA 1VQPW 3ZG0A 3ZG5A 2QA4W 1MWSA 1NJIX 1MBVB 3CCEW 1R6OC 3CC4W 5M1AA 2W9RA 1K73X 3W7XA 1K8AX 3O2BA 1MBXC 1KC8X 1QVGV 1QVFV 1JJ2V 2QEXW 1VQLW 3W7TA 4IO9W 1VQ7W 3ZFZA 1KQSV 3CC7W 3W7SA 3GQ1A 3GW1A 3CCVW 1MWUA 3G3PA 3CCQW 3G19A 1DD4A 3CD6W 1Q82X 5M18A 5GAGa 1VQ9W 3DNJA 1K9MX 1VQ8W 1YJWW 3CMAW 3W7UA 2WA8A 3I56W 1YJNW 4WFAW 1YIJW 1YJ9W 3J7ZZ 1VQ4W 2OTJW 3I55W 1S72W 5GW7A 1VQ5W 4YJMA 1Q7YX 2ZJPW 3G4SW 5JVGW 4BL3A 4BL2A 1M90X 4WF9W 3CCJW 1YI2W 1RQUA 3CCMW 1MG9A 4U67W 1N8RX 3D3IA 5DM6W 1YHQW 2ZJRW 3O2HA 1RQVA 4CJNA 1MBUC 4WCEW 3CPWV 5M19A 1VQNW 3G6EW 2WA9A 1KD1X 1R6QC 3GQ0A 3W7WA 3CCUW 3CXCV 4IOAW 2ZJQW 1M1KX 1BXYA 5HL7W 1MWTA 4WFNW 3DLLW 3PIPW 1Q86X 1RQSA 4IOCW 3OW2V 5GAEa 1YITW 3O2OA 1DD3A 3O1FA 3CCSW 4CPKA 1CTFA 2OTLW 4UY8Z 3CMEW 1VQOW 3G1BA 3O1FB 4C1NA 5GADa 3PIOW 4YKAA 3CC2W 5CA3A
chains in the Genus database with same CATH topology
5GAHa 3CCRW 5JVHW 1W2BV 3G71W 1VQMW 3CCLW 1VQKW 4WFBW 5DM7W 3CF5W 1VQ6W 1Q81X 1VQPW 2QA4W 1NJIX 3CCEW 3CC4W 1K73X 1K8AX 1KC8X 1QVGV 1QVFV 1JJ2V 2QEXW 1VQLW 4IO9W 1VQ7W 1KQSV 3CC7W 3CCVW 3CCQW 3CD6W 1Q82X 5GAGa 1VQ9W 1K9MX 1VQ8W 1YJWW 3CMAW 3I56W 1YJNW 4WFAW 1YIJW 1YJ9W 3J7ZZ 1VQ4W 2OTJW 3I55W 1S72W 1VQ5W 1Q7YX 2ZJPW 3G4SW 5JVGW 1M90X 4WF9W 3CCJW 1YI2W 3CCMW 4U67W 1N8RX 5DM6W 1YHQW 2ZJRW 4WCEW 3CPWV 1VQNW 3G6EW 1KD1X 3CCUW 3CXCV 4IOAW 2ZJQW 1M1KX 1BXYA 5HL7W 4WFNW 3DLLW 3PIPW 1Q86X 4IOCW 3OW2V 5GAEa 1YITW 3CCSW 2OTLW 4UY8Z 3CMEW 1VQOW 4C1NA 5GADa 3PIOW 3CC2W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAH a;  3CCR W;  5JVH W;  1W2B V;  3G71 W;  1VQM W;  3CCL W;  1VQK W;  4WFB W;  5DM7 W;  3CF5 W;  1VQ6 W;  1Q81 X;  1VQP W;  2QA4 W;  1NJI X;  3CCE W;  3CC4 W;  1K73 X;  1K8A X;  1KC8 X;  1QVG V;  1QVF V;  1JJ2 V;  2QEX W;  1VQL W;  4IO9 W;  1VQ7 W;  1KQS V;  3CC7 W;  3CCV W;  3CCQ W;  3CD6 W;  1Q82 X;  5GAG a;  1VQ9 W;  1K9M X;  1VQ8 W;  1YJW W;  3CMA W;  3I56 W;  1YJN W;  4WFA W;  1YIJ W;  1YJ9 W;  3J7Z Z;  1VQ4 W;  2OTJ W;  3I55 W;  1S72 W;  1VQ5 W;  1Q7Y X;  2ZJP W;  3G4S W;  5JVG W;  1M90 X;  4WF9 W;  3CCJ W;  1YI2 W;  3CCM W;  4U67 W;  1N8R X;  5DM6 W;  1YHQ W;  2ZJR W;  4WCE W;  3CPW V;  1VQN W;  3G6E W;  1KD1 X;  3CCU W;  3CXC V;  4IOA W;  2ZJQ W;  1M1K X;  1BXY A;  5HL7 W;  4WFN W;  3DLL W;  3PIP W;  1Q86 X;  4IOC W;  3OW2 V;  5GAE a;  1YIT W;  3CCS W;  2OTL W;  4UY8 Z;  3CME W;  1VQO W;  5GAD a;  3PIO W;  3CC2 W; 
#chains in the Genus database with same CATH topology
 5GAH a;  3CCR W;  5JVH W;  1W2B V;  3G71 W;  1VQM W;  3CCL W;  1VQK W;  4DKI A;  4WFB W;  1MWR A;  1VQQ A;  4YJX A;  5DM7 W;  3CF5 W;  1VQ6 W;  1Q81 X;  1LZW A;  1VQP W;  3ZG0 A;  3ZG5 A;  2QA4 W;  1MWS A;  1NJI X;  1MBV B;  3CCE W;  1R6O C;  3CC4 W;  5M1A A;  2W9R A;  1K73 X;  3W7X A;  1K8A X;  3O2B A;  1MBX C;  1KC8 X;  1QVG V;  1QVF V;  1JJ2 V;  2QEX W;  1VQL W;  3W7T A;  4IO9 W;  1VQ7 W;  3ZFZ A;  1KQS V;  3CC7 W;  3W7S A;  3GQ1 A;  3GW1 A;  3CCV W;  1MWU A;  3G3P A;  3CCQ W;  3G19 A;  1DD4 A;  3CD6 W;  1Q82 X;  5M18 A;  5GAG a;  1VQ9 W;  3DNJ A;  1K9M X;  1VQ8 W;  1YJW W;  3CMA W;  3W7U A;  2WA8 A;  3I56 W;  1YJN W;  4WFA W;  1YIJ W;  1YJ9 W;  3J7Z Z;  1VQ4 W;  2OTJ W;  3I55 W;  1S72 W;  5GW7 A;  1VQ5 W;  4YJM A;  1Q7Y X;  2ZJP W;  3G4S W;  5JVG W;  4BL3 A;  4BL2 A;  1M90 X;  4WF9 W;  3CCJ W;  1YI2 W;  1RQU A;  3CCM W;  1MG9 A;  4U67 W;  1N8R X;  3D3I A;  5DM6 W;  1YHQ W;  2ZJR W;  3O2H A;  1RQV A;  4CJN A;  1MBU C;  4WCE W;  3CPW V;  5M19 A;  1VQN W;  3G6E W;  2WA9 A;  1KD1 X;  1R6Q C;  3GQ0 A;  3W7W A;  3CCU W;  3CXC V;  4IOA W;  2ZJQ W;  1M1K X;  1BXY A;  5HL7 W;  1MWT A;  4WFN W;  3DLL W;  3PIP W;  1Q86 X;  1RQS A;  4IOC W;  3OW2 V;  5GAE a;  1YIT W;  3O2O A;  1DD3 A;  3O1F A;  3CCS W;  4CPK A;  1CTF A;  2OTL W;  4UY8 Z;  3CME W;  1VQO W;  3G1B A;  3O1F B;  4C1N A;  5GAD a;  3PIO W;  4YKA A;  3CC2 W;  5CA3 A; 
#chains in the Genus database with same CATH homology
 5GAH a;  3CCR W;  5JVH W;  1W2B V;  3G71 W;  1VQM W;  3CCL W;  1VQK W;  4WFB W;  5DM7 W;  3CF5 W;  1VQ6 W;  1Q81 X;  1VQP W;  2QA4 W;  1NJI X;  3CCE W;  3CC4 W;  1K73 X;  1K8A X;  1KC8 X;  1QVG V;  1QVF V;  1JJ2 V;  2QEX W;  1VQL W;  4IO9 W;  1VQ7 W;  1KQS V;  3CC7 W;  3CCV W;  3CCQ W;  3CD6 W;  1Q82 X;  5GAG a;  1VQ9 W;  1K9M X;  1VQ8 W;  1YJW W;  3CMA W;  3I56 W;  1YJN W;  4WFA W;  1YIJ W;  1YJ9 W;  3J7Z Z;  1VQ4 W;  2OTJ W;  3I55 W;  1S72 W;  1VQ5 W;  1Q7Y X;  2ZJP W;  3G4S W;  5JVG W;  1M90 X;  4WF9 W;  3CCJ W;  1YI2 W;  3CCM W;  4U67 W;  1N8R X;  5DM6 W;  1YHQ W;  2ZJR W;  4WCE W;  3CPW V;  1VQN W;  3G6E W;  1KD1 X;  3CCU W;  3CXC V;  4IOA W;  2ZJQ W;  1M1K X;  1BXY A;  5HL7 W;  4WFN W;  3DLL W;  3PIP W;  1Q86 X;  4IOC W;  3OW2 V;  5GAE a;  1YIT W;  3CCS W;  2OTL W;  4UY8 Z;  3CME W;  1VQO W;  4C1N A;  5GAD a;  3PIO W;  3CC2 W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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