1YJ3A

Crystal structure analysis of product bound methionine aminopeptidase type 1c from mycobacterium tuberculosis
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
282
structure length
282
Chain Sequence
RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Mycobacterium tuberculosis
publication title Identification of an SH3-binding motif in a new class of methionine aminopeptidases from Mycobacterium tuberculosis suggests a mode of interaction with the ribosome.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
total genus 87
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1yj3A01
3IU7A 2GGCA 1YW7A 1N51A 3D27A 4JUQA 2IW2A 3PKBA 1WKMA 2GZ5A 4ZWUA 2EVOA 4IECA 3S6BA 4IKTA 2P99A 2BWXA 1C24A 5JHUA 1C27A 4R60A 2EVMA 4OOKA 2GG9A 1R5GA 2B3HA 2Q96A 3L24A 4FKCA 5CDEA 3TB5A 1C23A 1QZYA 5JI6A 2GU4A 1QXWA 2P98A 1C22A 2BHDA 1QXZA 1JAWA 1YW9A 3CB6A 4IKUA 5CLSA 4U6EA 5FCFA 2BWTA 4B28A 5JFRA 4U75A 3BIQA 2BWVA 4S2TP 2GU7A 2GG8A 5CNXA 4U71A 4KM3A 1PV9A 1WY2A 1XNZA 1WLRA 4Z7MA 2BWYA 5CE6A 3FM3A 3PKEA 4RZYA 4S2RP 1KQ9A 1WL6A 5D6FA 2BB7A 3PKAA 3MX6A 3BITA 2BWUA 1R5HA 4IU6A 4U76A 4U6ZA 1XGMA 1XGNA 3MR1A 4ZWPA 1M35A 2EA4A 5CIKA 2GU5A 4RZZA 2Q95A 1WBQA 2GG5A 1W7VA 2GG2A 4IF7A 1BOAA 3IU8A 2BN7A 4IDYA 2Q93A 1MATA 3MATA 1R58A 1KQ0A 2GA2A 4IKRA 3PKDA 4S01A 4MATA 4FUKA 1Y1NA 3BIPA 4A6WA 1WN1A 2ZSGA 4ZNGA 1WL9A 2MATA 2NQ7A 1A16A 4U1BA 4EGEA 3IU9A 2Q92A 2G6PA 4FLIA 2ADUA 1QXYA 4U73A 2B3KA 1C21A 2GG7A 2BWWA 2GGBA 1YW8A 2GTXA 5E5BA 2BHAA 2Q94A 4U69A 4IPAA 5D6EA 2HOWA 3CB5A 4FLJA 4FO8A 4ZWOA 4RGZ1 1W2MA 1B6AA 3Q6DA 4U70A 2BHBA 4FO7A 1O0XA 2V6CA 5CDLA 1XGOA 4HXXA 2OKNA 3RVAA 4QR8A 1KP0A 5FCHA 2Q8KA 2OAZA 3CTZA 1B59A 2EVCA 3PKCA 2BH3A 4A6VA 4FLKA 2GG3A 2GU6A 3FMRA 3FMQA 3RORA 3IG4A 1XGSA 1YJ3A 3L7GA 4U6JA 4IKSA 4U6CA 3TAVA 2V3ZA 4S00A 4U6WA 2BHCA 2P9AA 2V3YA 2EA2A 2B3LA 2BWSA 1CHMA 1YVMA 4PV4A 5CDVA 4FLLA 2DFIA 2GG0A 2V3XA 2NQ6A 1BN5A 4PNCA
chains in the Genus database with same CATH superfamily
3IU7A 2GGCA 1YW7A 1N51A 3D27A 4JUQA 2IW2A 3PKBA 1WKMA 2GZ5A 4ZWUA 2EVOA 4IECA 3S6BA 4IKTA 2P99A 2BWXA 1C24A 5JHUA 1C27A 4R60A 2EVMA 4OOKA 2GG9A 1R5GA 2B3HA 2Q96A 3L24A 4FKCA 5CDEA 3TB5A 1C23A 1QZYA 5JI6A 2GU4A 1QXWA 2P98A 1C22A 2BHDA 1QXZA 1JAWA 1YW9A 3CB6A 4IKUA 5CLSA 4U6EA 5FCFA 2BWTA 4B28A 5JFRA 4U75A 3BIQA 2BWVA 4S2TP 2GU7A 2GG8A 5CNXA 4U71A 4KM3A 1PV9A 1WY2A 1XNZA 1WLRA 4Z7MA 2BWYA 5CE6A 3FM3A 3PKEA 4RZYA 4S2RP 1KQ9A 1WL6A 5D6FA 2BB7A 3PKAA 3MX6A 3BITA 2BWUA 1R5HA 4IU6A 4U76A 4U6ZA 1XGMA 1XGNA 3MR1A 4ZWPA 1M35A 2EA4A 5CIKA 2GU5A 4RZZA 2Q95A 1WBQA 2GG5A 1W7VA 2GG2A 4IF7A 1BOAA 3IU8A 2BN7A 4IDYA 2Q93A 1MATA 3MATA 1R58A 1KQ0A 2GA2A 4IKRA 3PKDA 4S01A 4MATA 4FUKA 1Y1NA 3BIPA 4A6WA 1WN1A 2ZSGA 4ZNGA 1WL9A 2MATA 2NQ7A 1A16A 4U1BA 4EGEA 3IU9A 2Q92A 2G6PA 4FLIA 2ADUA 1QXYA 4U73A 2B3KA 1C21A 2GG7A 2BWWA 2GGBA 1YW8A 2GTXA 5E5BA 2BHAA 2Q94A 4U69A 4IPAA 5D6EA 2HOWA 3CB5A 4FLJA 4FO8A 4ZWOA 4RGZ1 1W2MA 1B6AA 3Q6DA 4U70A 2BHBA 4FO7A 1O0XA 2V6CA 5CDLA 1XGOA 4HXXA 2OKNA 3RVAA 4QR8A 1KP0A 5FCHA 2Q8KA 2OAZA 3CTZA 1B59A 2EVCA 3PKCA 2BH3A 4A6VA 4FLKA 2GG3A 2GU6A 3FMRA 3FMQA 3RORA 3IG4A 1XGSA 1YJ3A 3L7GA 4U6JA 4IKSA 4U6CA 3TAVA 2V3ZA 4S00A 4U6WA 2BHCA 2P9AA 2V3YA 2EA2A 2B3LA 2BWSA 1CHMA 1YVMA 4PV4A 5CDVA 4FLLA 2DFIA 2GG0A 2V3XA 2NQ6A 1BN5A 4PNCA
chains in the Genus database with same CATH topology
3IU7A 2GGCA 1YW7A 1N51A 3D27A 4JUQA 2IW2A 3PKBA 1WKMA 2GZ5A 4ZWUA 2EVOA 4IECA 3S6BA 4IKTA 2P99A 2BWXA 1C24A 5JHUA 1C27A 4R60A 2EVMA 4OOKA 2GG9A 1R5GA 2B3HA 2Q96A 3L24A 4FKCA 5CDEA 3TB5A 1C23A 1QZYA 5JI6A 2GU4A 1QXWA 2P98A 1C22A 2BHDA 1QXZA 1JAWA 1YW9A 3CB6A 4IKUA 5CLSA 4U6EA 5FCFA 2BWTA 4B28A 5JFRA 4U75A 3BIQA 2BWVA 4S2TP 2GU7A 2GG8A 5CNXA 4U71A 4KM3A 1PV9A 1WY2A 1XNZA 1WLRA 4Z7MA 2BWYA 5CE6A 3FM3A 3PKEA 4RZYA 4S2RP 1KQ9A 1WL6A 5D6FA 2BB7A 3PKAA 3MX6A 3BITA 2BWUA 1R5HA 4IU6A 4U76A 4U6ZA 1XGMA 1XGNA 3MR1A 4ZWPA 1M35A 2EA4A 5CIKA 2GU5A 4RZZA 2Q95A 1WBQA 2GG5A 1W7VA 2GG2A 4IF7A 1BOAA 3IU8A 2BN7A 4IDYA 2Q93A 1MATA 3MATA 1R58A 1KQ0A 2GA2A 4IKRA 3PKDA 4S01A 4MATA 4FUKA 1Y1NA 3BIPA 4A6WA 1WN1A 2ZSGA 4ZNGA 1WL9A 2MATA 2NQ7A 1A16A 4U1BA 4EGEA 3IU9A 2Q92A 2G6PA 4FLIA 2ADUA 1QXYA 4U73A 2B3KA 1C21A 2GG7A 2BWWA 2GGBA 1YW8A 2GTXA 5E5BA 2BHAA 2Q94A 4U69A 4IPAA 5D6EA 2HOWA 3CB5A 4FLJA 4FO8A 4ZWOA 4RGZ1 1W2MA 1B6AA 3Q6DA 4U70A 2BHBA 4FO7A 1O0XA 2V6CA 5CDLA 1XGOA 4HXXA 2OKNA 3RVAA 4QR8A 1KP0A 5FCHA 2Q8KA 2OAZA 3CTZA 1B59A 2EVCA 3PKCA 2BH3A 4A6VA 4FLKA 2GG3A 2GU6A 3FMRA 3FMQA 3RORA 3IG4A 1XGSA 1YJ3A 3L7GA 4U6JA 4IKSA 4U6CA 3TAVA 2V3ZA 4S00A 4U6WA 2BHCA 2P9AA 2V3YA 2EA2A 2B3LA 2BWSA 1CHMA 1YVMA 4PV4A 5CDVA 4FLLA 2DFIA 2GG0A 2V3XA 2NQ6A 1BN5A 4PNCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IU7 A;  2GGC A;  1YW7 A;  1N51 A;  3D27 A;  4JUQ A;  2IW2 A;  3PKB A;  1WKM A;  2GZ5 A;  4ZWU A;  2EVO A;  4IEC A;  3S6B A;  4IKT A;  2P99 A;  2BWX A;  1C24 A;  5JHU A;  1C27 A;  4R60 A;  2EVM A;  4OOK A;  2GG9 A;  1R5G A;  2B3H A;  2Q96 A;  3L24 A;  4FKC A;  5CDE A;  3TB5 A;  1C23 A;  1QZY A;  5JI6 A;  2GU4 A;  1QXW A;  2P98 A;  1C22 A;  2BHD A;  1QXZ A;  1JAW A;  1YW9 A;  3CB6 A;  4IKU A;  5CLS A;  4U6E A;  5FCF A;  2BWT A;  4B28 A;  5JFR A;  4U75 A;  3BIQ A;  2BWV A;  4S2T P;  2GU7 A;  2GG8 A;  5CNX A;  4U71 A;  4KM3 A;  1PV9 A;  1WY2 A;  1XNZ A;  1WLR A;  4Z7M A;  2BWY A;  5CE6 A;  3FM3 A;  3PKE A;  4RZY A;  4S2R P;  1KQ9 A;  1WL6 A;  5D6F A;  2BB7 A;  3PKA A;  3MX6 A;  3BIT A;  2BWU A;  1R5H A;  4IU6 A;  4U76 A;  4U6Z A;  1XGM A;  1XGN A;  3MR1 A;  4ZWP A;  1M35 A;  2EA4 A;  5CIK A;  2GU5 A;  4RZZ A;  2Q95 A;  1WBQ A;  2GG5 A;  1W7V A;  2GG2 A;  4IF7 A;  1BOA A;  3IU8 A;  2BN7 A;  4IDY A;  2Q93 A;  1MAT A;  3MAT A;  1R58 A;  1KQ0 A;  2GA2 A;  4IKR A;  3PKD A;  4S01 A;  4MAT A;  4FUK A;  1Y1N A;  3BIP A;  4A6W A;  1WN1 A;  2ZSG A;  4ZNG A;  1WL9 A;  2MAT A;  2NQ7 A;  1A16 A;  4U1B A;  4EGE A;  3IU9 A;  2Q92 A;  2G6P A;  4FLI A;  2ADU A;  1QXY A;  4U73 A;  2B3K A;  1C21 A;  2GG7 A;  2BWW A;  2GGB A;  1YW8 A;  2GTX A;  5E5B A;  2BHA A;  2Q94 A;  4U69 A;  4IPA A;  5D6E A;  2HOW A;  3CB5 A;  4FLJ A;  4FO8 A;  4ZWO A;  4RGZ 1;  1W2M A;  1B6A A;  3Q6D A;  4U70 A;  2BHB A;  4FO7 A;  1O0X A;  2V6C A;  5CDL A;  1XGO A;  4HXX A;  2OKN A;  3RVA A;  4QR8 A;  1KP0 A;  5FCH A;  2Q8K A;  2OAZ A;  3CTZ A;  1B59 A;  2EVC A;  3PKC A;  2BH3 A;  4A6V A;  4FLK A;  2GG3 A;  2GU6 A;  3FMR A;  3FMQ A;  3ROR A;  3IG4 A;  1XGS A;  1YJ3 A;  3L7G A;  4U6J A;  4IKS A;  4U6C A;  3TAV A;  2V3Z A;  4S00 A;  4U6W A;  2BHC A;  2P9A A;  2V3Y A;  2EA2 A;  2B3L A;  2BWS A;  1CHM A;  1YVM A;  4PV4 A;  5CDV A;  4FLL A;  2DFI A;  2GG0 A;  2V3X A;  2NQ6 A;  1BN5 A;  4PNC A; 
#chains in the Genus database with same CATH topology
 3IU7 A;  2GGC A;  1YW7 A;  1N51 A;  3D27 A;  4JUQ A;  2IW2 A;  3PKB A;  1WKM A;  2GZ5 A;  4ZWU A;  2EVO A;  4IEC A;  3S6B A;  4IKT A;  2P99 A;  2BWX A;  1C24 A;  5JHU A;  1C27 A;  4R60 A;  2EVM A;  4OOK A;  2GG9 A;  1R5G A;  2B3H A;  2Q96 A;  3L24 A;  4FKC A;  5CDE A;  3TB5 A;  1C23 A;  1QZY A;  5JI6 A;  2GU4 A;  1QXW A;  2P98 A;  1C22 A;  2BHD A;  1QXZ A;  1JAW A;  1YW9 A;  3CB6 A;  4IKU A;  5CLS A;  4U6E A;  5FCF A;  2BWT A;  4B28 A;  5JFR A;  4U75 A;  3BIQ A;  2BWV A;  4S2T P;  2GU7 A;  2GG8 A;  5CNX A;  4U71 A;  4KM3 A;  1PV9 A;  1WY2 A;  1XNZ A;  1WLR A;  4Z7M A;  2BWY A;  5CE6 A;  3FM3 A;  3PKE A;  4RZY A;  4S2R P;  1KQ9 A;  1WL6 A;  5D6F A;  2BB7 A;  3PKA A;  3MX6 A;  3BIT A;  2BWU A;  1R5H A;  4IU6 A;  4U76 A;  4U6Z A;  1XGM A;  1XGN A;  3MR1 A;  4ZWP A;  1M35 A;  2EA4 A;  5CIK A;  2GU5 A;  4RZZ A;  2Q95 A;  1WBQ A;  2GG5 A;  1W7V A;  2GG2 A;  4IF7 A;  1BOA A;  3IU8 A;  2BN7 A;  4IDY A;  2Q93 A;  1MAT A;  3MAT A;  1R58 A;  1KQ0 A;  2GA2 A;  4IKR A;  3PKD A;  4S01 A;  4MAT A;  4FUK A;  1Y1N A;  3BIP A;  4A6W A;  1WN1 A;  2ZSG A;  4ZNG A;  1WL9 A;  2MAT A;  2NQ7 A;  1A16 A;  4U1B A;  4EGE A;  3IU9 A;  2Q92 A;  2G6P A;  4FLI A;  2ADU A;  1QXY A;  4U73 A;  2B3K A;  1C21 A;  2GG7 A;  2BWW A;  2GGB A;  1YW8 A;  2GTX A;  5E5B A;  2BHA A;  2Q94 A;  4U69 A;  4IPA A;  5D6E A;  2HOW A;  3CB5 A;  4FLJ A;  4FO8 A;  4ZWO A;  4RGZ 1;  1W2M A;  1B6A A;  3Q6D A;  4U70 A;  2BHB A;  4FO7 A;  1O0X A;  2V6C A;  5CDL A;  1XGO A;  4HXX A;  2OKN A;  3RVA A;  4QR8 A;  1KP0 A;  5FCH A;  2Q8K A;  2OAZ A;  3CTZ A;  1B59 A;  2EVC A;  3PKC A;  2BH3 A;  4A6V A;  4FLK A;  2GG3 A;  2GU6 A;  3FMR A;  3FMQ A;  3ROR A;  3IG4 A;  1XGS A;  1YJ3 A;  3L7G A;  4U6J A;  4IKS A;  4U6C A;  3TAV A;  2V3Z A;  4S00 A;  4U6W A;  2BHC A;  2P9A A;  2V3Y A;  2EA2 A;  2B3L A;  2BWS A;  1CHM A;  1YVM A;  4PV4 A;  5CDV A;  4FLL A;  2DFI A;  2GG0 A;  2V3X A;  2NQ6 A;  1BN5 A;  4PNC A; 
#chains in the Genus database with same CATH homology
 3IU7 A;  2GGC A;  1YW7 A;  1N51 A;  3D27 A;  4JUQ A;  2IW2 A;  3PKB A;  1WKM A;  2GZ5 A;  4ZWU A;  2EVO A;  4IEC A;  3S6B A;  4IKT A;  2P99 A;  2BWX A;  1C24 A;  5JHU A;  1C27 A;  4R60 A;  2EVM A;  4OOK A;  2GG9 A;  1R5G A;  2B3H A;  2Q96 A;  3L24 A;  4FKC A;  5CDE A;  3TB5 A;  1C23 A;  1QZY A;  5JI6 A;  2GU4 A;  1QXW A;  2P98 A;  1C22 A;  2BHD A;  1QXZ A;  1JAW A;  1YW9 A;  3CB6 A;  4IKU A;  5CLS A;  4U6E A;  5FCF A;  2BWT A;  4B28 A;  5JFR A;  4U75 A;  3BIQ A;  2BWV A;  4S2T P;  2GU7 A;  2GG8 A;  5CNX A;  4U71 A;  4KM3 A;  1PV9 A;  1WY2 A;  1XNZ A;  1WLR A;  4Z7M A;  2BWY A;  5CE6 A;  3FM3 A;  3PKE A;  4RZY A;  4S2R P;  1KQ9 A;  1WL6 A;  5D6F A;  2BB7 A;  3PKA A;  3MX6 A;  3BIT A;  2BWU A;  1R5H A;  4IU6 A;  4U76 A;  4U6Z A;  1XGM A;  1XGN A;  3MR1 A;  4ZWP A;  1M35 A;  2EA4 A;  5CIK A;  2GU5 A;  4RZZ A;  2Q95 A;  1WBQ A;  2GG5 A;  1W7V A;  2GG2 A;  4IF7 A;  1BOA A;  3IU8 A;  2BN7 A;  4IDY A;  2Q93 A;  1MAT A;  3MAT A;  1R58 A;  1KQ0 A;  2GA2 A;  4IKR A;  3PKD A;  4S01 A;  4MAT A;  4FUK A;  1Y1N A;  3BIP A;  4A6W A;  1WN1 A;  2ZSG A;  4ZNG A;  1WL9 A;  2MAT A;  2NQ7 A;  1A16 A;  4U1B A;  4EGE A;  3IU9 A;  2Q92 A;  2G6P A;  4FLI A;  2ADU A;  1QXY A;  4U73 A;  2B3K A;  1C21 A;  2GG7 A;  2BWW A;  2GGB A;  1YW8 A;  2GTX A;  5E5B A;  2BHA A;  2Q94 A;  4U69 A;  4IPA A;  5D6E A;  2HOW A;  3CB5 A;  4FLJ A;  4FO8 A;  4ZWO A;  4RGZ 1;  1W2M A;  1B6A A;  3Q6D A;  4U70 A;  2BHB A;  4FO7 A;  1O0X A;  2V6C A;  5CDL A;  1XGO A;  4HXX A;  2OKN A;  3RVA A;  4QR8 A;  1KP0 A;  5FCH A;  2Q8K A;  2OAZ A;  3CTZ A;  1B59 A;  2EVC A;  3PKC A;  2BH3 A;  4A6V A;  4FLK A;  2GG3 A;  2GU6 A;  3FMR A;  3FMQ A;  3ROR A;  3IG4 A;  1XGS A;  1YJ3 A;  3L7G A;  4U6J A;  4IKS A;  4U6C A;  3TAV A;  2V3Z A;  4S00 A;  4U6W A;  2BHC A;  2P9A A;  2V3Y A;  2EA2 A;  2B3L A;  2BWS A;  1CHM A;  1YVM A;  4PV4 A;  5CDV A;  4FLL A;  2DFI A;  2GG0 A;  2V3X A;  2NQ6 A;  1BN5 A;  4PNC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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