1YJ3A

Crystal structure analysis of product bound methionine aminopeptidase type 1c from mycobacterium tuberculosis
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
282
structure length
282
Chain Sequence
b'RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of an SH3-binding motif in a new class of methionine aminopeptidases from Mycobacterium tuberculosis suggests a mode of interaction with the ribosome.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
source organism Mycobacterium tuberculosis
molecule tags Hydrolase
total genus 87
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1yj3A01
4IF7A 2EA2A 2BWSA 3CB6A 4IU6A 1YVMA 3MX6A 1W2MA 2HOWA 1N51A 4ZWUA 4B28A 4FUKA 2BWWA 2GGCA 2V6CA 4JUQA 4U6WA 2EVOA 4IKSA 3BIQA 3RVAA 2Q96A 2GG5A 1WY2A 3FMRA 4RGZ1 2B3HA 3Q6DA 2GA2A 1WN1A 5CLSA 2GU6A 2BN7A 2Q93A 2BHDA 4FLLA 2GTXA 3PKEA 2GG2A 3FMQA 2BWXA 2G6PA 1O0XA 4IKTA 2MATA 2GG9A 2BHCA 5E5BA 5CDLA 2GG7A 1WKMA 2IW2A 4U73A 1PV9A 5CE6A 2BB7A 1XNZA 1C27A 2V3ZA 4IKRA 4R60A 4ZWPA 4IPAA 3BIPA 1Y1NA 3IU9A 3IG4A 5D6EA 4PV4A 2Q95A 2GG0A 4RZYA 1XGNA 4U6JA 1B6AA 4U71A 2NQ7A 1KQ0A 1C24A 2GG8A 1JAWA 2OKNA 3D27A 2V3XA 2EVCA 2Q8KA 4U69A 4ZWOA 3BITA 4A6VA 2BHAA 3FM3A 5D6FA 2BWVA 3MR1A 5CNXA 2ADUA 4PNCA 1A16A 4FO7A 1QXZA 4U6ZA 5JFRA 2NQ6A 4S2TP 1M35A 4S01A 3S6BA 4U75A 3RORA 2BHBA 1C22A 4IKUA 5FCHA 4QR8A 4RZZA 1C23A 4HXXA 4IDYA 5CDVA 5JHUA 4FLKA 1BOAA 1C21A 2BWUA 3CB5A 3PKAA 3L24A 5CDEA 1QZYA 1YJ3A 4U6EA 1YW7A 2EA4A 2OAZA 4OOKA 2GU4A 1KQ9A 1R5GA 5FCFA 3TB5A 1QXWA 1R58A 1QXYA 4FO8A 1XGOA 2BH3A 1R5HA 2GU5A 1WLRA 5JI6A 2P98A 1CHMA 3PKDA 2DFIA 3TAVA 1XGMA 2Q94A 2GZ5A 2V3YA 2P99A 1B59A 3PKBA 4U6CA 3CTZA 4EGEA 1YW9A 3IU7A 4A6WA 2GG3A 1WBQA 4S2RP 1MATA 4FLIA 4IECA 5CIKA 4ZNGA 1XGSA 4MATA 2BWYA 2P9AA 3MATA 1BN5A 4KM3A 1WL6A 2B3KA 2Q92A 3L7GA 2GU7A 4U1BA 4U76A 2GGBA 1KP0A 1YW8A 1W7VA 1WL9A 2BWTA 3IU8A 4S00A 4Z7MA 2B3LA 4FLJA 4U70A 2ZSGA 2EVMA 4FKCA 3PKCA
chains in the Genus database with same CATH superfamily
4IF7A 2EA2A 2BWSA 3CB6A 4IU6A 1YVMA 3MX6A 1W2MA 2HOWA 1N51A 4ZWUA 4B28A 4FUKA 2BWWA 2GGCA 2V6CA 4JUQA 4U6WA 2EVOA 4IKSA 3BIQA 3RVAA 2Q96A 2GG5A 1WY2A 3FMRA 4RGZ1 2B3HA 3Q6DA 2GA2A 1WN1A 5CLSA 2GU6A 2BN7A 2Q93A 2BHDA 4FLLA 2GTXA 3PKEA 2GG2A 3FMQA 2BWXA 2G6PA 1O0XA 4IKTA 2MATA 2GG9A 2BHCA 5E5BA 5CDLA 2GG7A 1WKMA 2IW2A 4U73A 1PV9A 5CE6A 2BB7A 1XNZA 1C27A 2V3ZA 4IKRA 4R60A 4ZWPA 4IPAA 3BIPA 1Y1NA 3IU9A 3IG4A 5D6EA 4PV4A 2Q95A 2GG0A 4RZYA 1XGNA 4U6JA 1B6AA 4U71A 2NQ7A 1KQ0A 1C24A 2GG8A 1JAWA 2OKNA 3D27A 2V3XA 2EVCA 2Q8KA 4U69A 4ZWOA 3BITA 4A6VA 2BHAA 3FM3A 5D6FA 2BWVA 3MR1A 5CNXA 2ADUA 4PNCA 1A16A 4FO7A 1QXZA 4U6ZA 5JFRA 2NQ6A 4S2TP 1M35A 4S01A 3S6BA 4U75A 3RORA 2BHBA 1C22A 4IKUA 5FCHA 4QR8A 4RZZA 1C23A 4HXXA 4IDYA 5CDVA 5JHUA 4FLKA 1BOAA 1C21A 2BWUA 3CB5A 3PKAA 3L24A 5CDEA 1QZYA 1YJ3A 4U6EA 1YW7A 2EA4A 2OAZA 4OOKA 2GU4A 1KQ9A 1R5GA 5FCFA 3TB5A 1QXWA 1R58A 1QXYA 4FO8A 1XGOA 2BH3A 1R5HA 2GU5A 1WLRA 5JI6A 2P98A 1CHMA 3PKDA 2DFIA 3TAVA 1XGMA 2Q94A 2GZ5A 2V3YA 2P99A 1B59A 3PKBA 4U6CA 3CTZA 4EGEA 1YW9A 3IU7A 4A6WA 2GG3A 1WBQA 4S2RP 1MATA 4FLIA 4IECA 5CIKA 4ZNGA 1XGSA 4MATA 2BWYA 2P9AA 3MATA 1BN5A 4KM3A 1WL6A 2B3KA 2Q92A 3L7GA 2GU7A 4U1BA 4U76A 2GGBA 1KP0A 1YW8A 1W7VA 1WL9A 2BWTA 3IU8A 4S00A 4Z7MA 2B3LA 4FLJA 4U70A 2ZSGA 2EVMA 4FKCA 3PKCA
chains in the Genus database with same CATH topology
4IF7A 2EA2A 2BWSA 3CB6A 4IU6A 1YVMA 3MX6A 1W2MA 2HOWA 1N51A 4ZWUA 4B28A 4FUKA 2BWWA 2GGCA 2V6CA 4JUQA 4U6WA 2EVOA 4IKSA 3BIQA 3RVAA 2Q96A 2GG5A 1WY2A 3FMRA 4RGZ1 2B3HA 3Q6DA 2GA2A 1WN1A 5CLSA 2GU6A 2BN7A 2Q93A 2BHDA 4FLLA 2GTXA 3PKEA 2GG2A 3FMQA 2BWXA 2G6PA 1O0XA 4IKTA 2MATA 2GG9A 2BHCA 5E5BA 5CDLA 2GG7A 1WKMA 2IW2A 4U73A 1PV9A 5CE6A 2BB7A 1XNZA 1C27A 2V3ZA 4IKRA 4R60A 4ZWPA 4IPAA 3BIPA 1Y1NA 3IU9A 3IG4A 5D6EA 4PV4A 2Q95A 2GG0A 4RZYA 1XGNA 4U6JA 1B6AA 4U71A 2NQ7A 1KQ0A 1C24A 2GG8A 1JAWA 2OKNA 3D27A 2V3XA 2EVCA 2Q8KA 4U69A 4ZWOA 3BITA 4A6VA 2BHAA 3FM3A 5D6FA 2BWVA 3MR1A 5CNXA 2ADUA 4PNCA 1A16A 4FO7A 1QXZA 4U6ZA 5JFRA 2NQ6A 4S2TP 1M35A 4S01A 3S6BA 4U75A 3RORA 2BHBA 1C22A 4IKUA 5FCHA 4QR8A 4RZZA 1C23A 4HXXA 4IDYA 5CDVA 5JHUA 4FLKA 1BOAA 1C21A 2BWUA 3CB5A 3PKAA 3L24A 5CDEA 1QZYA 1YJ3A 4U6EA 1YW7A 2EA4A 2OAZA 4OOKA 2GU4A 1KQ9A 1R5GA 5FCFA 3TB5A 1QXWA 1R58A 1QXYA 4FO8A 1XGOA 2BH3A 1R5HA 2GU5A 1WLRA 5JI6A 2P98A 1CHMA 3PKDA 2DFIA 3TAVA 1XGMA 2Q94A 2GZ5A 2V3YA 2P99A 1B59A 3PKBA 4U6CA 3CTZA 4EGEA 1YW9A 3IU7A 4A6WA 2GG3A 1WBQA 4S2RP 1MATA 4FLIA 4IECA 5CIKA 4ZNGA 1XGSA 4MATA 2BWYA 2P9AA 3MATA 1BN5A 4KM3A 1WL6A 2B3KA 2Q92A 3L7GA 2GU7A 4U1BA 4U76A 2GGBA 1KP0A 1YW8A 1W7VA 1WL9A 2BWTA 3IU8A 4S00A 4Z7MA 2B3LA 4FLJA 4U70A 2ZSGA 2EVMA 4FKCA 3PKCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IF7 A;  2EA2 A;  2BWS A;  3CB6 A;  4IU6 A;  1YVM A;  3MX6 A;  1W2M A;  2HOW A;  1N51 A;  4ZWU A;  4B28 A;  4FUK A;  2BWW A;  2GGC A;  2V6C A;  4JUQ A;  4U6W A;  2EVO A;  4IKS A;  3BIQ A;  3RVA A;  2Q96 A;  2GG5 A;  1WY2 A;  3FMR A;  4RGZ 1;  2B3H A;  3Q6D A;  2GA2 A;  1WN1 A;  5CLS A;  2GU6 A;  2BN7 A;  2Q93 A;  2BHD A;  4FLL A;  2GTX A;  3PKE A;  2GG2 A;  3FMQ A;  2BWX A;  2G6P A;  1O0X A;  4IKT A;  2MAT A;  2GG9 A;  2BHC A;  5E5B A;  5CDL A;  2GG7 A;  1WKM A;  2IW2 A;  4U73 A;  1PV9 A;  5CE6 A;  2BB7 A;  1XNZ A;  1C27 A;  2V3Z A;  4IKR A;  4R60 A;  4ZWP A;  4IPA A;  3BIP A;  1Y1N A;  3IU9 A;  3IG4 A;  5D6E A;  4PV4 A;  2Q95 A;  2GG0 A;  4RZY A;  1XGN A;  4U6J A;  1B6A A;  4U71 A;  2NQ7 A;  1KQ0 A;  1C24 A;  2GG8 A;  1JAW A;  2OKN A;  3D27 A;  2V3X A;  2EVC A;  2Q8K A;  4U69 A;  4ZWO A;  3BIT A;  4A6V A;  2BHA A;  3FM3 A;  5D6F A;  2BWV A;  3MR1 A;  5CNX A;  2ADU A;  4PNC A;  1A16 A;  4FO7 A;  1QXZ A;  4U6Z A;  5JFR A;  2NQ6 A;  4S2T P;  1M35 A;  4S01 A;  3S6B A;  4U75 A;  3ROR A;  2BHB A;  1C22 A;  4IKU A;  5FCH A;  4QR8 A;  4RZZ A;  1C23 A;  4HXX A;  4IDY A;  5CDV A;  5JHU A;  4FLK A;  1BOA A;  1C21 A;  2BWU A;  3CB5 A;  3PKA A;  3L24 A;  5CDE A;  1QZY A;  1YJ3 A;  4U6E A;  1YW7 A;  2EA4 A;  2OAZ A;  4OOK A;  2GU4 A;  1KQ9 A;  1R5G A;  5FCF A;  3TB5 A;  1QXW A;  1R58 A;  1QXY A;  4FO8 A;  1XGO A;  2BH3 A;  1R5H A;  2GU5 A;  1WLR A;  5JI6 A;  2P98 A;  1CHM A;  3PKD A;  2DFI A;  3TAV A;  1XGM A;  2Q94 A;  2GZ5 A;  2V3Y A;  2P99 A;  1B59 A;  3PKB A;  4U6C A;  3CTZ A;  4EGE A;  1YW9 A;  3IU7 A;  4A6W A;  2GG3 A;  1WBQ A;  4S2R P;  1MAT A;  4FLI A;  4IEC A;  5CIK A;  4ZNG A;  1XGS A;  4MAT A;  2BWY A;  2P9A A;  3MAT A;  1BN5 A;  4KM3 A;  1WL6 A;  2B3K A;  2Q92 A;  3L7G A;  2GU7 A;  4U1B A;  4U76 A;  2GGB A;  1KP0 A;  1YW8 A;  1W7V A;  1WL9 A;  2BWT A;  3IU8 A;  4S00 A;  4Z7M A;  2B3L A;  4FLJ A;  4U70 A;  2ZSG A;  2EVM A;  4FKC A;  3PKC A; 
#chains in the Genus database with same CATH topology
 4IF7 A;  2EA2 A;  2BWS A;  3CB6 A;  4IU6 A;  1YVM A;  3MX6 A;  1W2M A;  2HOW A;  1N51 A;  4ZWU A;  4B28 A;  4FUK A;  2BWW A;  2GGC A;  2V6C A;  4JUQ A;  4U6W A;  2EVO A;  4IKS A;  3BIQ A;  3RVA A;  2Q96 A;  2GG5 A;  1WY2 A;  3FMR A;  4RGZ 1;  2B3H A;  3Q6D A;  2GA2 A;  1WN1 A;  5CLS A;  2GU6 A;  2BN7 A;  2Q93 A;  2BHD A;  4FLL A;  2GTX A;  3PKE A;  2GG2 A;  3FMQ A;  2BWX A;  2G6P A;  1O0X A;  4IKT A;  2MAT A;  2GG9 A;  2BHC A;  5E5B A;  5CDL A;  2GG7 A;  1WKM A;  2IW2 A;  4U73 A;  1PV9 A;  5CE6 A;  2BB7 A;  1XNZ A;  1C27 A;  2V3Z A;  4IKR A;  4R60 A;  4ZWP A;  4IPA A;  3BIP A;  1Y1N A;  3IU9 A;  3IG4 A;  5D6E A;  4PV4 A;  2Q95 A;  2GG0 A;  4RZY A;  1XGN A;  4U6J A;  1B6A A;  4U71 A;  2NQ7 A;  1KQ0 A;  1C24 A;  2GG8 A;  1JAW A;  2OKN A;  3D27 A;  2V3X A;  2EVC A;  2Q8K A;  4U69 A;  4ZWO A;  3BIT A;  4A6V A;  2BHA A;  3FM3 A;  5D6F A;  2BWV A;  3MR1 A;  5CNX A;  2ADU A;  4PNC A;  1A16 A;  4FO7 A;  1QXZ A;  4U6Z A;  5JFR A;  2NQ6 A;  4S2T P;  1M35 A;  4S01 A;  3S6B A;  4U75 A;  3ROR A;  2BHB A;  1C22 A;  4IKU A;  5FCH A;  4QR8 A;  4RZZ A;  1C23 A;  4HXX A;  4IDY A;  5CDV A;  5JHU A;  4FLK A;  1BOA A;  1C21 A;  2BWU A;  3CB5 A;  3PKA A;  3L24 A;  5CDE A;  1QZY A;  1YJ3 A;  4U6E A;  1YW7 A;  2EA4 A;  2OAZ A;  4OOK A;  2GU4 A;  1KQ9 A;  1R5G A;  5FCF A;  3TB5 A;  1QXW A;  1R58 A;  1QXY A;  4FO8 A;  1XGO A;  2BH3 A;  1R5H A;  2GU5 A;  1WLR A;  5JI6 A;  2P98 A;  1CHM A;  3PKD A;  2DFI A;  3TAV A;  1XGM A;  2Q94 A;  2GZ5 A;  2V3Y A;  2P99 A;  1B59 A;  3PKB A;  4U6C A;  3CTZ A;  4EGE A;  1YW9 A;  3IU7 A;  4A6W A;  2GG3 A;  1WBQ A;  4S2R P;  1MAT A;  4FLI A;  4IEC A;  5CIK A;  4ZNG A;  1XGS A;  4MAT A;  2BWY A;  2P9A A;  3MAT A;  1BN5 A;  4KM3 A;  1WL6 A;  2B3K A;  2Q92 A;  3L7G A;  2GU7 A;  4U1B A;  4U76 A;  2GGB A;  1KP0 A;  1YW8 A;  1W7V A;  1WL9 A;  2BWT A;  3IU8 A;  4S00 A;  4Z7M A;  2B3L A;  4FLJ A;  4U70 A;  2ZSG A;  2EVM A;  4FKC A;  3PKC A; 
#chains in the Genus database with same CATH homology
 4IF7 A;  2EA2 A;  2BWS A;  3CB6 A;  4IU6 A;  1YVM A;  3MX6 A;  1W2M A;  2HOW A;  1N51 A;  4ZWU A;  4B28 A;  4FUK A;  2BWW A;  2GGC A;  2V6C A;  4JUQ A;  4U6W A;  2EVO A;  4IKS A;  3BIQ A;  3RVA A;  2Q96 A;  2GG5 A;  1WY2 A;  3FMR A;  4RGZ 1;  2B3H A;  3Q6D A;  2GA2 A;  1WN1 A;  5CLS A;  2GU6 A;  2BN7 A;  2Q93 A;  2BHD A;  4FLL A;  2GTX A;  3PKE A;  2GG2 A;  3FMQ A;  2BWX A;  2G6P A;  1O0X A;  4IKT A;  2MAT A;  2GG9 A;  2BHC A;  5E5B A;  5CDL A;  2GG7 A;  1WKM A;  2IW2 A;  4U73 A;  1PV9 A;  5CE6 A;  2BB7 A;  1XNZ A;  1C27 A;  2V3Z A;  4IKR A;  4R60 A;  4ZWP A;  4IPA A;  3BIP A;  1Y1N A;  3IU9 A;  3IG4 A;  5D6E A;  4PV4 A;  2Q95 A;  2GG0 A;  4RZY A;  1XGN A;  4U6J A;  1B6A A;  4U71 A;  2NQ7 A;  1KQ0 A;  1C24 A;  2GG8 A;  1JAW A;  2OKN A;  3D27 A;  2V3X A;  2EVC A;  2Q8K A;  4U69 A;  4ZWO A;  3BIT A;  4A6V A;  2BHA A;  3FM3 A;  5D6F A;  2BWV A;  3MR1 A;  5CNX A;  2ADU A;  4PNC A;  1A16 A;  4FO7 A;  1QXZ A;  4U6Z A;  5JFR A;  2NQ6 A;  4S2T P;  1M35 A;  4S01 A;  3S6B A;  4U75 A;  3ROR A;  2BHB A;  1C22 A;  4IKU A;  5FCH A;  4QR8 A;  4RZZ A;  1C23 A;  4HXX A;  4IDY A;  5CDV A;  5JHU A;  4FLK A;  1BOA A;  1C21 A;  2BWU A;  3CB5 A;  3PKA A;  3L24 A;  5CDE A;  1QZY A;  1YJ3 A;  4U6E A;  1YW7 A;  2EA4 A;  2OAZ A;  4OOK A;  2GU4 A;  1KQ9 A;  1R5G A;  5FCF A;  3TB5 A;  1QXW A;  1R58 A;  1QXY A;  4FO8 A;  1XGO A;  2BH3 A;  1R5H A;  2GU5 A;  1WLR A;  5JI6 A;  2P98 A;  1CHM A;  3PKD A;  2DFI A;  3TAV A;  1XGM A;  2Q94 A;  2GZ5 A;  2V3Y A;  2P99 A;  1B59 A;  3PKB A;  4U6C A;  3CTZ A;  4EGE A;  1YW9 A;  3IU7 A;  4A6W A;  2GG3 A;  1WBQ A;  4S2R P;  1MAT A;  4FLI A;  4IEC A;  5CIK A;  4ZNG A;  1XGS A;  4MAT A;  2BWY A;  2P9A A;  3MAT A;  1BN5 A;  4KM3 A;  1WL6 A;  2B3K A;  2Q92 A;  3L7G A;  2GU7 A;  4U1B A;  4U76 A;  2GGB A;  1KP0 A;  1YW8 A;  1W7V A;  1WL9 A;  2BWT A;  3IU8 A;  4S00 A;  4Z7M A;  2B3L A;  4FLJ A;  4U70 A;  2ZSG A;  2EVM A;  4FKC A;  3PKC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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