1YJ3A

Crystal structure analysis of product bound methionine aminopeptidase type 1c from mycobacterium tuberculosis
Total Genus 87
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
282
structure length
282
Chain Sequence
b'RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Methionine aminopeptidase
publication title Identification of an SH3-binding motif in a new class of methionine aminopeptidases from Mycobacterium tuberculosis suggests a mode of interaction with the ribosome.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Hydrolase
total genus 87
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1yj3A01
5CE6A 1XNZA 2GU6A 3TB5A 2BWYA 2P99A 3MATA 1KQ9A 1C22A 4U6ZA 5CDEA 1C27A 1YW8A 2HOWA 4B28A 4ZWUA 5JFRA 1YVMA 1Y1NA 2GG5A 5E5BA 1XGMA 1XGNA 4IU6A 1PV9A 4S2TP 4FLLA 1R5HA 4FO7A 3FMRA 1W7VA 2GGBA 1XGSA 1BOAA 1QXYA 3PKBA 4FLIA 1KQ0A 2GG0A 3RVAA 2GU5A 2NQ6A 1N51A 1R5GA 4IPAA 2BHAA 1QXWA 1WKMA 1YJ3A 2EVOA 3CB5A 4U71A 2Q95A 2EA2A 1B59A 1XGOA 3S6BA 2BWTA 3D27A 2BHDA 4PNCA 4A6VA 1YW9A 4FO8A 4Z7MA 1YW7A 4KM3A 2IW2A 4MATA 1WBQA 3IG4A 3CTZA 2P98A 2ZSGA 5CIKA 3RORA 4IF7A 1C23A 3CB6A 2BHCA 2V6CA 4U6CA 4U73A 2NQ7A 1QZYA 2V3XA 2BWSA 2BH3A 2GG8A 2V3ZA 4U6JA 1WL6A 1C21A 4HXXA 2Q8KA 4IKTA 2Q92A 1KP0A 4PV4A 5D6EA 3FMQA 2P9AA 2GU7A 4IECA 4ZWPA 5FCFA 4R60A 1M35A 5JI6A 1B6AA 4U1BA 3Q6DA 2GG7A 1QXZA 4IKUA 2GGCA 2GA2A 4QR8A 2BWUA 1C24A 2B3KA 4FLKA 2EVCA 3IU7A 1W2MA 3TAVA 2BWWA 3L24A 1A16A 4ZWOA 4RZZA 2V3YA 2MATA 2ADUA 2GU4A 4FLJA 4S2RP 2BB7A 3BITA 2GG3A 4S01A 1R58A 1WY2A 3PKDA 1WN1A 2BN7A 5D6FA 3PKAA 4A6WA 3FM3A 1BN5A 4U6WA 3BIPA 4IKSA 5CLSA 5JHUA 3MR1A 2G6PA 2OAZA 4U76A 3L7GA 2BHBA 4U6EA 2GG2A 2B3HA 3BIQA 2B3LA 1O0XA 3IU8A 4ZNGA 5FCHA 2Q94A 4IDYA 5CDVA 4JUQA 1WLRA 4IKRA 2GZ5A 2DFIA 4FKCA 4OOKA 3PKCA 4U69A 1WL9A 4U70A 2GG9A 5CDLA 2BWXA 2OKNA 3PKEA 4S00A 2EA4A 1MATA 4FUKA 4U75A 5CNXA 1JAWA 2GTXA 4RZYA 1CHMA 2Q96A 3IU9A 2EVMA 2Q93A 3MX6A 4EGEA 4RGZ1 2BWVA
chains in the Genus database with same CATH superfamily
5CE6A 1XNZA 2GU6A 3TB5A 2BWYA 2P99A 3MATA 1KQ9A 1C22A 4U6ZA 5CDEA 1C27A 1YW8A 2HOWA 4B28A 4ZWUA 5JFRA 1YVMA 1Y1NA 2GG5A 5E5BA 1XGMA 1XGNA 4IU6A 1PV9A 4S2TP 4FLLA 1R5HA 4FO7A 3FMRA 1W7VA 2GGBA 1XGSA 1BOAA 1QXYA 3PKBA 4FLIA 1KQ0A 2GG0A 3RVAA 2GU5A 2NQ6A 1N51A 1R5GA 4IPAA 2BHAA 1QXWA 1WKMA 1YJ3A 2EVOA 3CB5A 4U71A 2Q95A 2EA2A 1B59A 1XGOA 3S6BA 2BWTA 3D27A 2BHDA 4PNCA 4A6VA 1YW9A 4FO8A 4Z7MA 1YW7A 4KM3A 2IW2A 4MATA 1WBQA 3IG4A 3CTZA 2P98A 2ZSGA 5CIKA 3RORA 4IF7A 1C23A 3CB6A 2BHCA 2V6CA 4U6CA 4U73A 2NQ7A 1QZYA 2V3XA 2BWSA 2BH3A 2GG8A 2V3ZA 4U6JA 1WL6A 1C21A 4HXXA 2Q8KA 4IKTA 2Q92A 1KP0A 4PV4A 5D6EA 3FMQA 2P9AA 2GU7A 4IECA 4ZWPA 5FCFA 4R60A 1M35A 5JI6A 1B6AA 4U1BA 3Q6DA 2GG7A 1QXZA 4IKUA 2GGCA 2GA2A 4QR8A 2BWUA 1C24A 2B3KA 4FLKA 2EVCA 3IU7A 1W2MA 3TAVA 2BWWA 3L24A 1A16A 4ZWOA 4RZZA 2V3YA 2MATA 2ADUA 2GU4A 4FLJA 4S2RP 2BB7A 3BITA 2GG3A 4S01A 1R58A 1WY2A 3PKDA 1WN1A 2BN7A 5D6FA 3PKAA 4A6WA 3FM3A 1BN5A 4U6WA 3BIPA 4IKSA 5CLSA 5JHUA 3MR1A 2G6PA 2OAZA 4U76A 3L7GA 2BHBA 4U6EA 2GG2A 2B3HA 3BIQA 2B3LA 1O0XA 3IU8A 4ZNGA 5FCHA 2Q94A 4IDYA 5CDVA 4JUQA 1WLRA 4IKRA 2GZ5A 2DFIA 4FKCA 4OOKA 3PKCA 4U69A 1WL9A 4U70A 2GG9A 5CDLA 2BWXA 2OKNA 3PKEA 4S00A 2EA4A 1MATA 4FUKA 4U75A 5CNXA 1JAWA 2GTXA 4RZYA 1CHMA 2Q96A 3IU9A 2EVMA 2Q93A 3MX6A 4EGEA 4RGZ1 2BWVA
chains in the Genus database with same CATH topology
5CE6A 1XNZA 2GU6A 3TB5A 2BWYA 2P99A 3MATA 1KQ9A 1C22A 4U6ZA 5CDEA 1C27A 1YW8A 2HOWA 4B28A 4ZWUA 5JFRA 1YVMA 1Y1NA 2GG5A 5E5BA 1XGMA 1XGNA 4IU6A 1PV9A 4S2TP 4FLLA 1R5HA 4FO7A 3FMRA 1W7VA 2GGBA 1XGSA 1BOAA 1QXYA 3PKBA 4FLIA 1KQ0A 2GG0A 3RVAA 2GU5A 2NQ6A 1N51A 1R5GA 4IPAA 2BHAA 1QXWA 1WKMA 1YJ3A 2EVOA 3CB5A 4U71A 2Q95A 2EA2A 1B59A 1XGOA 3S6BA 2BWTA 3D27A 2BHDA 4PNCA 4A6VA 1YW9A 4FO8A 4Z7MA 1YW7A 4KM3A 2IW2A 4MATA 1WBQA 3IG4A 3CTZA 2P98A 2ZSGA 5CIKA 3RORA 4IF7A 1C23A 3CB6A 2BHCA 2V6CA 4U6CA 4U73A 2NQ7A 1QZYA 2V3XA 2BWSA 2BH3A 2GG8A 2V3ZA 4U6JA 1WL6A 1C21A 4HXXA 2Q8KA 4IKTA 2Q92A 1KP0A 4PV4A 5D6EA 3FMQA 2P9AA 2GU7A 4IECA 4ZWPA 5FCFA 4R60A 1M35A 5JI6A 1B6AA 4U1BA 3Q6DA 2GG7A 1QXZA 4IKUA 2GGCA 2GA2A 4QR8A 2BWUA 1C24A 2B3KA 4FLKA 2EVCA 3IU7A 1W2MA 3TAVA 2BWWA 3L24A 1A16A 4ZWOA 4RZZA 2V3YA 2MATA 2ADUA 2GU4A 4FLJA 4S2RP 2BB7A 3BITA 2GG3A 4S01A 1R58A 1WY2A 3PKDA 1WN1A 2BN7A 5D6FA 3PKAA 4A6WA 3FM3A 1BN5A 4U6WA 3BIPA 4IKSA 5CLSA 5JHUA 3MR1A 2G6PA 2OAZA 4U76A 3L7GA 2BHBA 4U6EA 2GG2A 2B3HA 3BIQA 2B3LA 1O0XA 3IU8A 4ZNGA 5FCHA 2Q94A 4IDYA 5CDVA 4JUQA 1WLRA 4IKRA 2GZ5A 2DFIA 4FKCA 4OOKA 3PKCA 4U69A 1WL9A 4U70A 2GG9A 5CDLA 2BWXA 2OKNA 3PKEA 4S00A 2EA4A 1MATA 4FUKA 4U75A 5CNXA 1JAWA 2GTXA 4RZYA 1CHMA 2Q96A 3IU9A 2EVMA 2Q93A 3MX6A 4EGEA 4RGZ1 2BWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CE6 A;  1XNZ A;  2GU6 A;  3TB5 A;  2BWY A;  2P99 A;  3MAT A;  1KQ9 A;  1C22 A;  4U6Z A;  5CDE A;  1C27 A;  1YW8 A;  2HOW A;  4B28 A;  4ZWU A;  5JFR A;  1YVM A;  1Y1N A;  2GG5 A;  5E5B A;  1XGM A;  1XGN A;  4IU6 A;  1PV9 A;  4S2T P;  4FLL A;  1R5H A;  4FO7 A;  3FMR A;  1W7V A;  2GGB A;  1XGS A;  1BOA A;  1QXY A;  3PKB A;  4FLI A;  1KQ0 A;  2GG0 A;  3RVA A;  2GU5 A;  2NQ6 A;  1N51 A;  1R5G A;  4IPA A;  2BHA A;  1QXW A;  1WKM A;  1YJ3 A;  2EVO A;  3CB5 A;  4U71 A;  2Q95 A;  2EA2 A;  1B59 A;  1XGO A;  3S6B A;  2BWT A;  3D27 A;  2BHD A;  4PNC A;  4A6V A;  1YW9 A;  4FO8 A;  4Z7M A;  1YW7 A;  4KM3 A;  2IW2 A;  4MAT A;  1WBQ A;  3IG4 A;  3CTZ A;  2P98 A;  2ZSG A;  5CIK A;  3ROR A;  4IF7 A;  1C23 A;  3CB6 A;  2BHC A;  2V6C A;  4U6C A;  4U73 A;  2NQ7 A;  1QZY A;  2V3X A;  2BWS A;  2BH3 A;  2GG8 A;  2V3Z A;  4U6J A;  1WL6 A;  1C21 A;  4HXX A;  2Q8K A;  4IKT A;  2Q92 A;  1KP0 A;  4PV4 A;  5D6E A;  3FMQ A;  2P9A A;  2GU7 A;  4IEC A;  4ZWP A;  5FCF A;  4R60 A;  1M35 A;  5JI6 A;  1B6A A;  4U1B A;  3Q6D A;  2GG7 A;  1QXZ A;  4IKU A;  2GGC A;  2GA2 A;  4QR8 A;  2BWU A;  1C24 A;  2B3K A;  4FLK A;  2EVC A;  3IU7 A;  1W2M A;  3TAV A;  2BWW A;  3L24 A;  1A16 A;  4ZWO A;  4RZZ A;  2V3Y A;  2MAT A;  2ADU A;  2GU4 A;  4FLJ A;  4S2R P;  2BB7 A;  3BIT A;  2GG3 A;  4S01 A;  1R58 A;  1WY2 A;  3PKD A;  1WN1 A;  2BN7 A;  5D6F A;  3PKA A;  4A6W A;  3FM3 A;  1BN5 A;  4U6W A;  3BIP A;  4IKS A;  5CLS A;  5JHU A;  3MR1 A;  2G6P A;  2OAZ A;  4U76 A;  3L7G A;  2BHB A;  4U6E A;  2GG2 A;  2B3H A;  3BIQ A;  2B3L A;  1O0X A;  3IU8 A;  4ZNG A;  5FCH A;  2Q94 A;  4IDY A;  5CDV A;  4JUQ A;  1WLR A;  4IKR A;  2GZ5 A;  2DFI A;  4FKC A;  4OOK A;  3PKC A;  4U69 A;  1WL9 A;  4U70 A;  2GG9 A;  5CDL A;  2BWX A;  2OKN A;  3PKE A;  4S00 A;  2EA4 A;  1MAT A;  4FUK A;  4U75 A;  5CNX A;  1JAW A;  2GTX A;  4RZY A;  1CHM A;  2Q96 A;  3IU9 A;  2EVM A;  2Q93 A;  3MX6 A;  4EGE A;  4RGZ 1;  2BWV A; 
#chains in the Genus database with same CATH topology
 5CE6 A;  1XNZ A;  2GU6 A;  3TB5 A;  2BWY A;  2P99 A;  3MAT A;  1KQ9 A;  1C22 A;  4U6Z A;  5CDE A;  1C27 A;  1YW8 A;  2HOW A;  4B28 A;  4ZWU A;  5JFR A;  1YVM A;  1Y1N A;  2GG5 A;  5E5B A;  1XGM A;  1XGN A;  4IU6 A;  1PV9 A;  4S2T P;  4FLL A;  1R5H A;  4FO7 A;  3FMR A;  1W7V A;  2GGB A;  1XGS A;  1BOA A;  1QXY A;  3PKB A;  4FLI A;  1KQ0 A;  2GG0 A;  3RVA A;  2GU5 A;  2NQ6 A;  1N51 A;  1R5G A;  4IPA A;  2BHA A;  1QXW A;  1WKM A;  1YJ3 A;  2EVO A;  3CB5 A;  4U71 A;  2Q95 A;  2EA2 A;  1B59 A;  1XGO A;  3S6B A;  2BWT A;  3D27 A;  2BHD A;  4PNC A;  4A6V A;  1YW9 A;  4FO8 A;  4Z7M A;  1YW7 A;  4KM3 A;  2IW2 A;  4MAT A;  1WBQ A;  3IG4 A;  3CTZ A;  2P98 A;  2ZSG A;  5CIK A;  3ROR A;  4IF7 A;  1C23 A;  3CB6 A;  2BHC A;  2V6C A;  4U6C A;  4U73 A;  2NQ7 A;  1QZY A;  2V3X A;  2BWS A;  2BH3 A;  2GG8 A;  2V3Z A;  4U6J A;  1WL6 A;  1C21 A;  4HXX A;  2Q8K A;  4IKT A;  2Q92 A;  1KP0 A;  4PV4 A;  5D6E A;  3FMQ A;  2P9A A;  2GU7 A;  4IEC A;  4ZWP A;  5FCF A;  4R60 A;  1M35 A;  5JI6 A;  1B6A A;  4U1B A;  3Q6D A;  2GG7 A;  1QXZ A;  4IKU A;  2GGC A;  2GA2 A;  4QR8 A;  2BWU A;  1C24 A;  2B3K A;  4FLK A;  2EVC A;  3IU7 A;  1W2M A;  3TAV A;  2BWW A;  3L24 A;  1A16 A;  4ZWO A;  4RZZ A;  2V3Y A;  2MAT A;  2ADU A;  2GU4 A;  4FLJ A;  4S2R P;  2BB7 A;  3BIT A;  2GG3 A;  4S01 A;  1R58 A;  1WY2 A;  3PKD A;  1WN1 A;  2BN7 A;  5D6F A;  3PKA A;  4A6W A;  3FM3 A;  1BN5 A;  4U6W A;  3BIP A;  4IKS A;  5CLS A;  5JHU A;  3MR1 A;  2G6P A;  2OAZ A;  4U76 A;  3L7G A;  2BHB A;  4U6E A;  2GG2 A;  2B3H A;  3BIQ A;  2B3L A;  1O0X A;  3IU8 A;  4ZNG A;  5FCH A;  2Q94 A;  4IDY A;  5CDV A;  4JUQ A;  1WLR A;  4IKR A;  2GZ5 A;  2DFI A;  4FKC A;  4OOK A;  3PKC A;  4U69 A;  1WL9 A;  4U70 A;  2GG9 A;  5CDL A;  2BWX A;  2OKN A;  3PKE A;  4S00 A;  2EA4 A;  1MAT A;  4FUK A;  4U75 A;  5CNX A;  1JAW A;  2GTX A;  4RZY A;  1CHM A;  2Q96 A;  3IU9 A;  2EVM A;  2Q93 A;  3MX6 A;  4EGE A;  4RGZ 1;  2BWV A; 
#chains in the Genus database with same CATH homology
 5CE6 A;  1XNZ A;  2GU6 A;  3TB5 A;  2BWY A;  2P99 A;  3MAT A;  1KQ9 A;  1C22 A;  4U6Z A;  5CDE A;  1C27 A;  1YW8 A;  2HOW A;  4B28 A;  4ZWU A;  5JFR A;  1YVM A;  1Y1N A;  2GG5 A;  5E5B A;  1XGM A;  1XGN A;  4IU6 A;  1PV9 A;  4S2T P;  4FLL A;  1R5H A;  4FO7 A;  3FMR A;  1W7V A;  2GGB A;  1XGS A;  1BOA A;  1QXY A;  3PKB A;  4FLI A;  1KQ0 A;  2GG0 A;  3RVA A;  2GU5 A;  2NQ6 A;  1N51 A;  1R5G A;  4IPA A;  2BHA A;  1QXW A;  1WKM A;  1YJ3 A;  2EVO A;  3CB5 A;  4U71 A;  2Q95 A;  2EA2 A;  1B59 A;  1XGO A;  3S6B A;  2BWT A;  3D27 A;  2BHD A;  4PNC A;  4A6V A;  1YW9 A;  4FO8 A;  4Z7M A;  1YW7 A;  4KM3 A;  2IW2 A;  4MAT A;  1WBQ A;  3IG4 A;  3CTZ A;  2P98 A;  2ZSG A;  5CIK A;  3ROR A;  4IF7 A;  1C23 A;  3CB6 A;  2BHC A;  2V6C A;  4U6C A;  4U73 A;  2NQ7 A;  1QZY A;  2V3X A;  2BWS A;  2BH3 A;  2GG8 A;  2V3Z A;  4U6J A;  1WL6 A;  1C21 A;  4HXX A;  2Q8K A;  4IKT A;  2Q92 A;  1KP0 A;  4PV4 A;  5D6E A;  3FMQ A;  2P9A A;  2GU7 A;  4IEC A;  4ZWP A;  5FCF A;  4R60 A;  1M35 A;  5JI6 A;  1B6A A;  4U1B A;  3Q6D A;  2GG7 A;  1QXZ A;  4IKU A;  2GGC A;  2GA2 A;  4QR8 A;  2BWU A;  1C24 A;  2B3K A;  4FLK A;  2EVC A;  3IU7 A;  1W2M A;  3TAV A;  2BWW A;  3L24 A;  1A16 A;  4ZWO A;  4RZZ A;  2V3Y A;  2MAT A;  2ADU A;  2GU4 A;  4FLJ A;  4S2R P;  2BB7 A;  3BIT A;  2GG3 A;  4S01 A;  1R58 A;  1WY2 A;  3PKD A;  1WN1 A;  2BN7 A;  5D6F A;  3PKA A;  4A6W A;  3FM3 A;  1BN5 A;  4U6W A;  3BIP A;  4IKS A;  5CLS A;  5JHU A;  3MR1 A;  2G6P A;  2OAZ A;  4U76 A;  3L7G A;  2BHB A;  4U6E A;  2GG2 A;  2B3H A;  3BIQ A;  2B3L A;  1O0X A;  3IU8 A;  4ZNG A;  5FCH A;  2Q94 A;  4IDY A;  5CDV A;  4JUQ A;  1WLR A;  4IKR A;  2GZ5 A;  2DFI A;  4FKC A;  4OOK A;  3PKC A;  4U69 A;  1WL9 A;  4U70 A;  2GG9 A;  5CDL A;  2BWX A;  2OKN A;  3PKE A;  4S00 A;  2EA4 A;  1MAT A;  4FUK A;  4U75 A;  5CNX A;  1JAW A;  2GTX A;  4RZY A;  1CHM A;  2Q96 A;  3IU9 A;  2EVM A;  2Q93 A;  3MX6 A;  4EGE A;  4RGZ 1;  2BWV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...