1YJ9H

Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion in l22
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 37
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yj9H00
1M90J 1YJNH 3CMEH 1Q86J 3CCQH 3CC7H 2ZJRJ 1Q81J 3J7ZM 1KD1J 1VQ5H 4IOAJ 3CF5J 3CMAH 2OTLH 1YJ9H 3CCEH 1YIJH 1KC8J 3CCJH 4WFBJ 3G71H 1YJWH 3I55H 3CC2H 1K8AJ 3G4SH 1VQOH 5JVHJ 3PIOJ 3CD6H 3CC4H 5AN9F 5H1SO 1VQ8H 1JJ2H 3CCLH 1VQNH 5GAEN 1K9MJ 3I56H 5DM7J 1M1KJ 4WCEJ 1VQ9H 1YHQH 1VQ7H 3OW2H 5MLCO 2OTJH 5DM6J 2QA4H 1VQ4H 1Y69K 1VQLH 1N8RJ 2ZJQJ 1QVGH 4WF9J 1Q82J 1QVFH 5HL7J 4IO9J 1S72H 3CCUH 3CCVH 1VQMH 1Q7YJ 3CCSH 1VQPH 4UY8M 4WFAJ 1W2BH 3CPWH 4WFNJ 3PIPJ 3CCRH 4IOCJ 3CXCH 2QEXH 3CCMH 5GAGN 1VQ6H 4U67J 3DLLJ 1VQKH 1WKIA 1K73J 2PA2A 1NJIJ 1YI2H 1KQSH 1YITH 5GAHN 3G6EH 2ZJPJ 5JVGJ 5GADN
chains in the Genus database with same CATH superfamily
4KWWA 1M90J 1RM6A 4X46A 3PAJA 4C80A 3WO1A 1YJNH 2B7NA 3CMEH 1Q86J 3C2EA 2W55B 3CCQH 5MPOC 3CC7H 4C7ZA 2ZJRJ 1QPQA 1N63B 3C2RA 1N62B 4US9A 3J7ZM 4YYYA 1Q81J 3AM9A 1KD1J 1AZYA 1VQ5H 5AYXA 4GA6A 3CF5J 1NVJA 3CMAH 4IOAJ 1VLBA 4KWVA 2OTLH 3C2VA 1YJ9H 3CCEH 1YIJH 1FFVB 1KC8J 4XR5A 1QPNA 3CCJH 4WFBJ 1DGJA 5HUOA 3B9JC 1YTDA 3G71H 1YJWH 2TPTA 4AP8A 3I55H 3CC2H 1K8AJ 3G4SH 1VQOH 5JVHJ 3PIOJ 3CD6H 1JRPB 3L0GA 4USAA 3AN1A 3NVWC 2ZJPJ 3CC4H 2B7PA 5AN9F 5H1SO 3NVYC 1VDVA 3H5QA 5AYZA 2OMDA 4ZOHA 4EADA 1VQ8H 1FMAE 2E3TA 3FC4A 1JJ2H 1ZXIB 1N61B 1SB3A 1X1OA 3CCLH 4EAFA 1VQNH 3WO0A 5GAEN 4US8A 1K9MJ 1OTPA 2WP4A 3GNNA 3I56H 1JROB 5EY3A 3EUB4 4LHMA 5DM7J 4YEKA 1BRWA 1M1KJ 1N5XA 2JBMA 4WCEJ 1VQ9H 2I14A 3C2OA 5HUPA 3VMMA 1YHQH 3SR6C 2WK6A 3RPFA 1VQ7H 3OW2H 5MLCO 2OTJH 5DM6J 2QA4H 1VQ4H 3NVZC 1Y69K 1QAPA 1VQLH 3FAHA 1N60B 1N8RJ 4GA5A 2W3SB 2ZJQJ 4C7YA 4WF9J 1SIJA 1QVGH 1FO4A 3NVVC 1Q82J 2J0FA 1FFUB 4I9AA 1QVFH 1V97A 5HL7J 4IO9J 3CCUH 3CCVH 3ETRC 3WNZA 1S72H 2W3RB 1Q7YJ 1FM0E 1VQMH 3CCSH 1YTKA 4GA4A 3NS1C 1VQPH 4UY8M 4WFAJ 3C2FA 3AMZA 5AYYA 1W2BH 1NVIE 5HULA 3CPWH 1QPOA 4WFNJ 2I1OA 2WK5A 3L4PA 3PIPJ 3CCRH 1WYGA 4IOCJ 2DSJA 3CXCH 2QEXH 3CCMH 5GAGN 3TQVA 1N5WB 2Q5WE 1VQ6H 3NRZC 1FIQC 1YTEA 2B7QA 2QIEA 4U67J 3DLLJ 1VQKH 1WKIA 1K73J 1UOUA 2PA2A 3BIIE 1YI2H 1NJIJ 1YITH 1KQSH 5GAHN 5EP8A 1O4UA 3G6EH 1QPRA 2W54B 5JVGJ 5GADN
chains in the Genus database with same CATH topology
1M90J 1YJNH 3CMEH 1Q86J 3CCQH 3CC7H 2ZJRJ 1Q81J 3J7ZM 1KD1J 1VQ5H 4IOAJ 3CF5J 3CMAH 2OTLH 1YJ9H 3CCEH 1YIJH 1KC8J 3CCJH 4WFBJ 3G71H 1YJWH 3I55H 3CC2H 1K8AJ 3G4SH 1VQOH 5JVHJ 3PIOJ 3CD6H 3CC4H 5AN9F 5H1SO 1VQ8H 1JJ2H 3CCLH 1VQNH 5GAEN 1K9MJ 3I56H 5DM7J 1M1KJ 4WCEJ 1VQ9H 1YHQH 1VQ7H 3OW2H 5MLCO 2OTJH 5DM6J 2QA4H 1VQ4H 1Y69K 1VQLH 1N8RJ 2ZJQJ 1QVGH 4WF9J 1Q82J 1QVFH 5HL7J 4IO9J 1S72H 3CCUH 3CCVH 1VQMH 1Q7YJ 3CCSH 1VQPH 4UY8M 4WFAJ 1W2BH 3CPWH 4WFNJ 3PIPJ 3CCRH 4IOCJ 3CXCH 2QEXH 3CCMH 5GAGN 1VQ6H 4U67J 3DLLJ 1VQKH 1WKIA 1K73J 2PA2A 1NJIJ 1YI2H 1KQSH 1YITH 5GAHN 3G6EH 2ZJPJ 5JVGJ 5GADN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M90 J;  1YJN H;  3CME H;  1Q86 J;  3CCQ H;  3CC7 H;  2ZJR J;  1Q81 J;  3J7Z M;  1KD1 J;  1VQ5 H;  4IOA J;  3CF5 J;  3CMA H;  2OTL H;  1YJ9 H;  3CCE H;  1YIJ H;  1KC8 J;  3CCJ H;  4WFB J;  3G71 H;  1YJW H;  3I55 H;  3CC2 H;  1K8A J;  3G4S H;  1VQO H;  5JVH J;  3PIO J;  3CD6 H;  3CC4 H;  5AN9 F;  5H1S O;  1VQ8 H;  1JJ2 H;  3CCL H;  1VQN H;  5GAE N;  1K9M J;  3I56 H;  5DM7 J;  1M1K J;  4WCE J;  1VQ9 H;  1YHQ H;  1VQ7 H;  3OW2 H;  5MLC O;  2OTJ H;  5DM6 J;  2QA4 H;  1VQ4 H;  1Y69 K;  1VQL H;  1N8R J;  2ZJQ J;  1QVG H;  4WF9 J;  1Q82 J;  1QVF H;  5HL7 J;  4IO9 J;  1S72 H;  3CCU H;  3CCV H;  1VQM H;  1Q7Y J;  3CCS H;  1VQP H;  4UY8 M;  4WFA J;  1W2B H;  3CPW H;  4WFN J;  3PIP J;  3CCR H;  4IOC J;  3CXC H;  2QEX H;  3CCM H;  5GAG N;  1VQ6 H;  4U67 J;  3DLL J;  1VQK H;  1WKI A;  1K73 J;  2PA2 A;  1NJI J;  1YI2 H;  1KQS H;  1YIT H;  5GAH N;  3G6E H;  2ZJP J;  5JVG J;  5GAD N; 
#chains in the Genus database with same CATH topology
 4KWW A;  1M90 J;  1RM6 A;  4X46 A;  3PAJ A;  4C80 A;  3WO1 A;  1YJN H;  2B7N A;  3CME H;  1Q86 J;  3C2E A;  2W55 B;  3CCQ H;  5MPO C;  3CC7 H;  4C7Z A;  2ZJR J;  1QPQ A;  1N63 B;  3C2R A;  1N62 B;  4US9 A;  3J7Z M;  4YYY A;  1Q81 J;  3AM9 A;  1KD1 J;  1AZY A;  1VQ5 H;  5AYX A;  4GA6 A;  3CF5 J;  1NVJ A;  3CMA H;  4IOA J;  1VLB A;  4KWV A;  2OTL H;  3C2V A;  1YJ9 H;  3CCE H;  1YIJ H;  1FFV B;  1KC8 J;  4XR5 A;  1QPN A;  3CCJ H;  4WFB J;  1DGJ A;  5HUO A;  3B9J C;  1YTD A;  3G71 H;  1YJW H;  2TPT A;  4AP8 A;  3I55 H;  3CC2 H;  1K8A J;  3G4S H;  1VQO H;  5JVH J;  3PIO J;  3CD6 H;  1JRP B;  3L0G A;  4USA A;  3AN1 A;  3NVW C;  2ZJP J;  3CC4 H;  2B7P A;  5AN9 F;  5H1S O;  3NVY C;  1VDV A;  3H5Q A;  5AYZ A;  2OMD A;  4ZOH A;  4EAD A;  1VQ8 H;  1FMA E;  2E3T A;  3FC4 A;  1JJ2 H;  1ZXI B;  1N61 B;  1SB3 A;  1X1O A;  3CCL H;  4EAF A;  1VQN H;  3WO0 A;  5GAE N;  4US8 A;  1K9M J;  1OTP A;  2WP4 A;  3GNN A;  3I56 H;  1JRO B;  5EY3 A;  3EUB 4;  4LHM A;  5DM7 J;  4YEK A;  1BRW A;  1M1K J;  1N5X A;  2JBM A;  4WCE J;  1VQ9 H;  2I14 A;  3C2O A;  5HUP A;  3VMM A;  1YHQ H;  3SR6 C;  2WK6 A;  3RPF A;  1VQ7 H;  3OW2 H;  5MLC O;  2OTJ H;  5DM6 J;  2QA4 H;  1VQ4 H;  3NVZ C;  1Y69 K;  1QAP A;  1VQL H;  3FAH A;  1N60 B;  1N8R J;  4GA5 A;  2W3S B;  2ZJQ J;  4C7Y A;  4WF9 J;  1SIJ A;  1QVG H;  1FO4 A;  3NVV C;  1Q82 J;  2J0F A;  1FFU B;  4I9A A;  1QVF H;  1V97 A;  5HL7 J;  4IO9 J;  3CCU H;  3CCV H;  3ETR C;  3WNZ A;  1S72 H;  2W3R B;  1Q7Y J;  1FM0 E;  1VQM H;  3CCS H;  1YTK A;  4GA4 A;  3NS1 C;  1VQP H;  4UY8 M;  4WFA J;  3C2F A;  3AMZ A;  5AYY A;  1W2B H;  1NVI E;  5HUL A;  3CPW H;  1QPO A;  4WFN J;  2I1O A;  2WK5 A;  3L4P A;  3PIP J;  3CCR H;  1WYG A;  4IOC J;  2DSJ A;  3CXC H;  2QEX H;  3CCM H;  5GAG N;  3TQV A;  1N5W B;  2Q5W E;  1VQ6 H;  3NRZ C;  1FIQ C;  1YTE A;  2B7Q A;  2QIE A;  4U67 J;  3DLL J;  1VQK H;  1WKI A;  1K73 J;  1UOU A;  2PA2 A;  3BII E;  1YI2 H;  1NJI J;  1YIT H;  1KQS H;  5GAH N;  5EP8 A;  1O4U A;  3G6E H;  1QPR A;  2W54 B;  5JVG J;  5GAD N; 
#chains in the Genus database with same CATH homology
 1M90 J;  1YJN H;  3CME H;  1Q86 J;  3CCQ H;  3CC7 H;  2ZJR J;  1Q81 J;  3J7Z M;  1KD1 J;  1VQ5 H;  4IOA J;  3CF5 J;  3CMA H;  2OTL H;  1YJ9 H;  3CCE H;  1YIJ H;  1KC8 J;  3CCJ H;  4WFB J;  3G71 H;  1YJW H;  3I55 H;  3CC2 H;  1K8A J;  3G4S H;  1VQO H;  5JVH J;  3PIO J;  3CD6 H;  3CC4 H;  5AN9 F;  5H1S O;  1VQ8 H;  1JJ2 H;  3CCL H;  1VQN H;  5GAE N;  1K9M J;  3I56 H;  5DM7 J;  1M1K J;  4WCE J;  1VQ9 H;  1YHQ H;  1VQ7 H;  3OW2 H;  5MLC O;  2OTJ H;  5DM6 J;  2QA4 H;  1VQ4 H;  1Y69 K;  1VQL H;  1N8R J;  2ZJQ J;  1QVG H;  4WF9 J;  1Q82 J;  1QVF H;  5HL7 J;  4IO9 J;  1S72 H;  3CCU H;  3CCV H;  1VQM H;  1Q7Y J;  3CCS H;  1VQP H;  4UY8 M;  4WFA J;  1W2B H;  3CPW H;  4WFN J;  3PIP J;  3CCR H;  4IOC J;  3CXC H;  2QEX H;  3CCM H;  5GAG N;  1VQ6 H;  4U67 J;  3DLL J;  1VQK H;  1WKI A;  1K73 J;  2PA2 A;  1NJI J;  1YI2 H;  1KQS H;  1YIT H;  5GAH N;  3G6E H;  2ZJP J;  5JVG J;  5GAD N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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