1YJ9J

Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion in l22
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 42
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 1yj9J00
1KQSI 2ZJRG 3CF5G 4IOAG 3OW2I 3DLLG 1K8AK 1YJ9J 1M90K 3CPWI 1YI2J 1VQ8J 3CCQJ 1JJ2I 1VQNJ 1YIJJ 1VQ4J 1VQPJ 3CCLJ 1N8RK 1VQ7J 3CC4J 3G6EJ 3CCSJ 1VQKJ 1QVGI 1VQMJ 1YHQJ 1YITJ 1KC8K 1J3AA 4V19N 3CXCI 3CCMJ 3CCJJ 1VQLJ 1Q86K 1YJNJ 3G4SJ 1VQ9J 1W2BI 1K73K 1VQOJ 1K9MK 3CCEJ 3CD6J 3PIPG 3PIOG 1YJWJ 3CC7J 2OTLJ 2ZJQG 3CCUJ 2QA4J 1S72J 3J7YK 4IO9G 4IOCG 2ZJPG 3CMEJ 3CCRJ 3CCVJ 2OTJJ 1Q7YK 1QVFI 3I55J 1M1KK 3G71J 1Q82K 3I56J 3CC2J 1NJIK 1KD1K 2QEXJ 1VQ6J 3CMAJ 1Q81K 1VQ5J
chains in the Genus database with same CATH superfamily
1KQSI 2ZJRG 3CF5G 4IOAG 3OW2I 3DLLG 1K8AK 1YJ9J 1M90K 3CPWI 1YI2J 1VQ8J 3CCQJ 1JJ2I 1VQNJ 1YIJJ 1VQ4J 1VQPJ 3CCLJ 1N8RK 1VQ7J 3CC4J 3G6EJ 3CCSJ 1VQKJ 1QVGI 1VQMJ 1YHQJ 1YITJ 1KC8K 1J3AA 4V19N 3CXCI 3CCMJ 3CCJJ 1VQLJ 1Q86K 1YJNJ 3G4SJ 1VQ9J 1W2BI 1K73K 1VQOJ 1K9MK 3CCEJ 3CD6J 3PIPG 3PIOG 1YJWJ 3CC7J 2OTLJ 2ZJQG 3CCUJ 2QA4J 1S72J 3J7YK 4IO9G 4IOCG 2ZJPG 3CMEJ 3CCRJ 3CCVJ 2OTJJ 1Q7YK 1QVFI 3I55J 1M1KK 3G71J 1Q82K 3I56J 3CC2J 1NJIK 1KD1K 2QEXJ 1VQ6J 3CMAJ 1Q81K 1VQ5J
chains in the Genus database with same CATH topology
1KQSI 2ZJRG 3CF5G 4IOAG 3OW2I 3DLLG 1K8AK 1YJ9J 1M90K 3CPWI 1YI2J 1VQ8J 3CCQJ 1JJ2I 1VQNJ 1YIJJ 1VQ4J 1VQPJ 3CCLJ 1N8RK 1VQ7J 3CC4J 3G6EJ 3CCSJ 1VQKJ 1QVGI 1VQMJ 1YHQJ 1YITJ 1KC8K 1J3AA 4V19N 3CXCI 3CCMJ 3CCJJ 1VQLJ 1Q86K 1YJNJ 3G4SJ 1VQ9J 1W2BI 1K73K 1VQOJ 1K9MK 3CCEJ 3CD6J 3PIPG 3PIOG 1YJWJ 3CC7J 2OTLJ 2ZJQG 3CCUJ 2QA4J 1S72J 3J7YK 4IO9G 4IOCG 2ZJPG 3CMEJ 3CCRJ 3CCVJ 2OTJJ 1Q7YK 1QVFI 3I55J 1M1KK 3G71J 1Q82K 3I56J 3CC2J 1NJIK 1KD1K 2QEXJ 1VQ6J 3CMAJ 1Q81K 1VQ5J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQS I;  2ZJR G;  3CF5 G;  4IOA G;  3OW2 I;  3DLL G;  1K8A K;  1YJ9 J;  1M90 K;  3CPW I;  1YI2 J;  1VQ8 J;  3CCQ J;  1JJ2 I;  1VQN J;  1YIJ J;  1VQ4 J;  1VQP J;  3CCL J;  1N8R K;  1VQ7 J;  3CC4 J;  3G6E J;  3CCS J;  1VQK J;  1QVG I;  1VQM J;  1YHQ J;  1YIT J;  1KC8 K;  1J3A A;  4V19 N;  3CXC I;  3CCM J;  3CCJ J;  1VQL J;  1Q86 K;  1YJN J;  3G4S J;  1VQ9 J;  1W2B I;  1K73 K;  1VQO J;  1K9M K;  3CCE J;  3CD6 J;  3PIP G;  3PIO G;  1YJW J;  3CC7 J;  2OTL J;  2ZJQ G;  3CCU J;  2QA4 J;  1S72 J;  3J7Y K;  4IO9 G;  4IOC G;  2ZJP G;  3CME J;  3CCR J;  3CCV J;  2OTJ J;  1Q7Y K;  1QVF I;  3I55 J;  1M1K K;  3G71 J;  1Q82 K;  3I56 J;  3CC2 J;  1NJI K;  1KD1 K;  2QEX J;  1VQ6 J;  3CMA J;  1Q81 K;  1VQ5 J; 
#chains in the Genus database with same CATH topology
 1KQS I;  2ZJR G;  3CF5 G;  4IOA G;  3OW2 I;  3DLL G;  1K8A K;  1YJ9 J;  1M90 K;  3CPW I;  1YI2 J;  1VQ8 J;  3CCQ J;  1JJ2 I;  1VQN J;  1YIJ J;  1VQ4 J;  1VQP J;  3CCL J;  1N8R K;  1VQ7 J;  3CC4 J;  3G6E J;  3CCS J;  1VQK J;  1QVG I;  1VQM J;  1YHQ J;  1YIT J;  1KC8 K;  1J3A A;  4V19 N;  3CXC I;  3CCM J;  3CCJ J;  1VQL J;  1Q86 K;  1YJN J;  3G4S J;  1VQ9 J;  1W2B I;  1K73 K;  1VQO J;  1K9M K;  3CCE J;  3CD6 J;  3PIP G;  3PIO G;  1YJW J;  3CC7 J;  2OTL J;  2ZJQ G;  3CCU J;  2QA4 J;  1S72 J;  3J7Y K;  4IO9 G;  4IOC G;  2ZJP G;  3CME J;  3CCR J;  3CCV J;  2OTJ J;  1Q7Y K;  1QVF I;  3I55 J;  1M1K K;  3G71 J;  1Q82 K;  3I56 J;  3CC2 J;  1NJI K;  1KD1 K;  2QEX J;  1VQ6 J;  3CMA J;  1Q81 K;  1VQ5 J; 
#chains in the Genus database with same CATH homology
 1KQS I;  2ZJR G;  3CF5 G;  4IOA G;  3OW2 I;  3DLL G;  1K8A K;  1YJ9 J;  1M90 K;  3CPW I;  1YI2 J;  1VQ8 J;  3CCQ J;  1JJ2 I;  1VQN J;  1YIJ J;  1VQ4 J;  1VQP J;  3CCL J;  1N8R K;  1VQ7 J;  3CC4 J;  3G6E J;  3CCS J;  1VQK J;  1QVG I;  1VQM J;  1YHQ J;  1YIT J;  1KC8 K;  1J3A A;  4V19 N;  3CXC I;  3CCM J;  3CCJ J;  1VQL J;  1Q86 K;  1YJN J;  3G4S J;  1VQ9 J;  1W2B I;  1K73 K;  1VQO J;  1K9M K;  3CCE J;  3CD6 J;  3PIP G;  3PIO G;  1YJW J;  3CC7 J;  2OTL J;  2ZJQ G;  3CCU J;  2QA4 J;  1S72 J;  3J7Y K;  4IO9 G;  4IOC G;  2ZJP G;  3CME J;  3CCR J;  3CCV J;  2OTJ J;  1Q7Y K;  1QVF I;  3I55 J;  1M1K K;  3G71 J;  1Q82 K;  3I56 J;  3CC2 J;  1NJI K;  1KD1 K;  2QEX J;  1VQ6 J;  3CMA J;  1Q81 K;  1VQ5 J; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...