1YJMA

Crystal structure of the fha domain of mouse polynucleotide kinase in complex with an xrcc4-derived phosphopeptide.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
107
structure length
107
Chain Sequence
LGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRWEELS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/dna binding protein
molecule keywords Polynucleotide 5'-hydroxyl-kinase
publication title The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase.
pubmed doi rcsb
source organism Mus musculus
total genus 18
structure length 107
sequence length 107
chains with identical sequence B, C
ec nomenclature ec 2.7.1.78: Polynucleotide 5'-hydroxyl-kinase.
pdb deposition date 2005-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17913 FHA_2 FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 1yjmA00
3FM8A 3UV0A 5E50A 1QU5A 2KFUA 3UNMA 2FEZA 1K3JA 1YJ5C 2KB3A 4G2SA 1LGPA 1UHTA 4H87A 1J4PA 1DMZA 2CSWA 1K2MA 3I0NA 2JPEA 1J4KA 3OUNA 3VA1A 1K3NA 3UOTA 1J4LA 1K3QA 2JKDA 2KKLA 3PO8A 3ELVA 5DJOA 1K2NA 1J4OA 3GQSA 1FHRA 2BRFA 1G6GA 3VA4A 3HUFA 3I6WA 4QCJA 3UN0A 1GXCA 1YJMA 4A0EA 5A8IA 4JONA 3POAA 2KB4A 2JQLA 3HX1A 3MDBA 2A0TA 4EJQA 1J4QA 2XT9B 2G1LA 2W3OA 2FF4A 3UNNA 3HUEA 1WLNA 3I6UA 1MZKA 2PIEA 4D9VA 1FHQA 2LC1A 1UJXA 3KT9A 2JQIA 2EH0A 1WV3A 2JQJA 1R21A 3ELSA 1G3GA 2AFFA 3I0MA 3VPYA 3UMZA 4EGXA 1LGQA
chains in the Genus database with same CATH superfamily
3FM8A 3UV0A 5E50A 1QU5A 2KFUA 1Y3HA 4R9PA 2I1WA 3UNMA 2FEZA 1QWTA 2BONA 1K3JA 4HAOA 5EJIA 1YJ5C 1MK2A 2KB3A 4G2SA 5DHRA 1LGPA 1U7VA 1UHTA 3VZDA 4H87A 3DITA 3GMJA 1Z0SA 1J4PA 1DMZA 5C4VA 2CSWA 2I2CA 1K2MA 1DEVA 3I0NA 5DHQA 2JPEA 3T5PA 1DD1A 4A4YA 4DY6A 1J4KA 1MJSA 1YGSA 3DSHA 2I29A 3OUNA 2QV7A 3VA1A 1K3NA 3A77A 1G88A 3UOTA 1Y3IA 1Z0ZA 1J4LA 4WRRA 1K3QA 2JKDA 4JIWD 5DHTA 5JEMA 3UMZA 5EJFA 2KKLA 3PO8A 3ELVA 5DJOA 5EJHA 1SUWA 3AFOA 4L02A 1K2NA 1J4OA 3GQSA 1U7VB 1FHRA 5JERA 2BRFA 3PFNA 1G6GA 2P1RA 3V8RA 3VA4A 3VZBA 4EGXA 3HUFA 3I6WA 4QCJA 3UN0A 1GXCA 3V7UA 1Z0UA 1YJMA 4A0EA 5JEJA 1LGQA 5JEKA 3V8NA 5A8IA 4JONA 2JGRA 3POAA 2QVLA 2KB4A 2JQLA 2Q5FA 3HX1A 3MDBA 4KU0D 2A0TA 1J2FA 5DHUA 2I2BA 1YT5A 2I2DA 2I2FA 3V8PA 4EJQA 1J4QA 2XT9B 2G1LA 3V8MA 2AN1A 2W3OA 2FF4A 3UNNA 4WERA 1U7FA 3HUEA 1WLNA 3I6UA 1MZKA 2PIEA 4D9VA 1FHQA 2LC1A 3V8QA 1KHXA 1UJXA 3S40A 3KT9A 1ZOQA 1U0TA 5JELA 2JQIA 2EH0A 5JEOA 1KHUA 1WV3A 4JIVD 3V80A 5EJGA 2JQJA 3V7WA 2I2AA 2XXSA 3VZCA 1R21A 3ELSA 4V24A 1G3GA 2AFFA 3I0MA 5DHPA 5BVIA 1MR1A 3VPYA 3V7YA 5DHSA 1U7FB 1U0RA
chains in the Genus database with same CATH topology
3FM8A 3UV0A 5E50A 1QU5A 2KFUA 4R9PA 3UNMA 2FEZA 1QWTA 2BONA 1K3JA 1YJ5C 1MK2A 2KB3A 4G2SA 1LGPA 1U7VA 1UHTA 3VZDA 4H87A 3DITA 3GMJA 1J4PA 1DMZA 5C4VA 2CSWA 1K2MA 1DEVA 3I0NA 3T5PA 2JPEA 1DD1A 4A4YA 1J4KA 1MJSA 1YGSA 3DSHA 3OUNA 2QV7A 3VA1A 1K3NA 3A77A 1G88A 3UOTA 1J4LA 4WRRA 1K3QA 2JKDA 4JIWD 5JEMA 2KKLA 3PO8A 3ELVA 5DJOA 4L02A 1K2NA 1J4OA 3GQSA 1U7VB 1FHRA 5JERA 2BRFA 1G6GA 2P1RA 4EGXA 3VA4A 3VZBA 3HUFA 3I6WA 4QCJA 3UN0A 1GXCA 1YJMA 4A0EA 5JEJA 5JEKA 5A8IA 4JONA 2JGRA 3POAA 2QVLA 2KB4A 2JQLA 3HX1A 3MDBA 4KU0D 2A0TA 1J2FA 4EJQA 1J4QA 2XT9B 2G1LA 2W3OA 2FF4A 3UNNA 4WERA 1U7FA 3HUEA 1WLNA 3I6UA 1MZKA 2PIEA 4D9VA 1FHQA 2LC1A 1KHXA 1UJXA 3S40A 3KT9A 1ZOQA 5JELA 2JQIA 2EH0A 5JEOA 1KHUA 1WV3A 4JIVD 2JQJA 2XXSA 3VZCA 1R21A 3ELSA 4V24A 1G3GA 2AFFA 3I0MA 5BVIA 1MR1A 3VPYA 3UMZA 1U7FB 1LGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FM8 A;  3UV0 A;  5E50 A;  1QU5 A;  2KFU A;  3UNM A;  2FEZ A;  1K3J A;  1YJ5 C;  2KB3 A;  4G2S A;  1LGP A;  1UHT A;  4H87 A;  1J4P A;  1DMZ A;  2CSW A;  1K2M A;  3I0N A;  2JPE A;  1J4K A;  3OUN A;  3VA1 A;  1K3N A;  3UOT A;  1J4L A;  1K3Q A;  2JKD A;  2KKL A;  3PO8 A;  3ELV A;  5DJO A;  1K2N A;  1J4O A;  3GQS A;  1FHR A;  2BRF A;  1G6G A;  3VA4 A;  3HUF A;  3I6W A;  4QCJ A;  3UN0 A;  1GXC A;  1YJM A;  4A0E A;  5A8I A;  4JON A;  3POA A;  2KB4 A;  2JQL A;  3HX1 A;  3MDB A;  2A0T A;  4EJQ A;  1J4Q A;  2XT9 B;  2G1L A;  2W3O A;  2FF4 A;  3UNN A;  3HUE A;  1WLN A;  3I6U A;  1MZK A;  2PIE A;  4D9V A;  1FHQ A;  2LC1 A;  1UJX A;  3KT9 A;  2JQI A;  2EH0 A;  1WV3 A;  2JQJ A;  1R21 A;  3ELS A;  1G3G A;  2AFF A;  3I0M A;  3VPY A;  3UMZ A;  4EGX A;  1LGQ A; 
#chains in the Genus database with same CATH topology
 3FM8 A;  3UV0 A;  5E50 A;  1QU5 A;  2KFU A;  1Y3H A;  4R9P A;  2I1W A;  3UNM A;  2FEZ A;  1QWT A;  2BON A;  1K3J A;  4HAO A;  5EJI A;  1YJ5 C;  1MK2 A;  2KB3 A;  4G2S A;  5DHR A;  1LGP A;  1U7V A;  1UHT A;  3VZD A;  4H87 A;  3DIT A;  3GMJ A;  1Z0S A;  1J4P A;  1DMZ A;  5C4V A;  2CSW A;  2I2C A;  1K2M A;  1DEV A;  3I0N A;  5DHQ A;  2JPE A;  3T5P A;  1DD1 A;  4A4Y A;  4DY6 A;  1J4K A;  1MJS A;  1YGS A;  3DSH A;  2I29 A;  3OUN A;  2QV7 A;  3VA1 A;  1K3N A;  3A77 A;  1G88 A;  3UOT A;  1Y3I A;  1Z0Z A;  1J4L A;  4WRR A;  1K3Q A;  2JKD A;  4JIW D;  5DHT A;  5JEM A;  3UMZ A;  5EJF A;  2KKL A;  3PO8 A;  3ELV A;  5DJO A;  5EJH A;  1SUW A;  3AFO A;  4L02 A;  1K2N A;  1J4O A;  3GQS A;  1U7V B;  1FHR A;  5JER A;  2BRF A;  3PFN A;  1G6G A;  2P1R A;  3V8R A;  3VA4 A;  3VZB A;  4EGX A;  3HUF A;  3I6W A;  4QCJ A;  3UN0 A;  1GXC A;  3V7U A;  1Z0U A;  1YJM A;  4A0E A;  5JEJ A;  1LGQ A;  5JEK A;  3V8N A;  5A8I A;  4JON A;  2JGR A;  3POA A;  2QVL A;  2KB4 A;  2JQL A;  2Q5F A;  3HX1 A;  3MDB A;  4KU0 D;  2A0T A;  1J2F A;  5DHU A;  2I2B A;  1YT5 A;  2I2D A;  2I2F A;  3V8P A;  4EJQ A;  1J4Q A;  2XT9 B;  2G1L A;  3V8M A;  2AN1 A;  2W3O A;  2FF4 A;  3UNN A;  4WER A;  1U7F A;  3HUE A;  1WLN A;  3I6U A;  1MZK A;  2PIE A;  4D9V A;  1FHQ A;  2LC1 A;  3V8Q A;  1KHX A;  1UJX A;  3S40 A;  3KT9 A;  1ZOQ A;  1U0T A;  5JEL A;  2JQI A;  2EH0 A;  5JEO A;  1KHU A;  1WV3 A;  4JIV D;  3V80 A;  5EJG A;  2JQJ A;  3V7W A;  2I2A A;  2XXS A;  3VZC A;  1R21 A;  3ELS A;  4V24 A;  1G3G A;  2AFF A;  3I0M A;  5DHP A;  5BVI A;  1MR1 A;  3VPY A;  3V7Y A;  5DHS A;  1U7F B;  1U0R A; 
#chains in the Genus database with same CATH homology
 3FM8 A;  3UV0 A;  5E50 A;  1QU5 A;  2KFU A;  4R9P A;  3UNM A;  2FEZ A;  1QWT A;  2BON A;  1K3J A;  1YJ5 C;  1MK2 A;  2KB3 A;  4G2S A;  1LGP A;  1U7V A;  1UHT A;  3VZD A;  4H87 A;  3DIT A;  3GMJ A;  1J4P A;  1DMZ A;  5C4V A;  2CSW A;  1K2M A;  1DEV A;  3I0N A;  3T5P A;  2JPE A;  1DD1 A;  4A4Y A;  1J4K A;  1MJS A;  1YGS A;  3DSH A;  3OUN A;  2QV7 A;  3VA1 A;  1K3N A;  3A77 A;  1G88 A;  3UOT A;  1J4L A;  4WRR A;  1K3Q A;  2JKD A;  4JIW D;  5JEM A;  2KKL A;  3PO8 A;  3ELV A;  5DJO A;  4L02 A;  1K2N A;  1J4O A;  3GQS A;  1U7V B;  1FHR A;  5JER A;  2BRF A;  1G6G A;  2P1R A;  4EGX A;  3VA4 A;  3VZB A;  3HUF A;  3I6W A;  4QCJ A;  3UN0 A;  1GXC A;  1YJM A;  4A0E A;  5JEJ A;  5JEK A;  5A8I A;  4JON A;  2JGR A;  3POA A;  2QVL A;  2KB4 A;  2JQL A;  3HX1 A;  3MDB A;  4KU0 D;  2A0T A;  1J2F A;  4EJQ A;  1J4Q A;  2XT9 B;  2G1L A;  2W3O A;  2FF4 A;  3UNN A;  4WER A;  1U7F A;  3HUE A;  1WLN A;  3I6U A;  1MZK A;  2PIE A;  4D9V A;  1FHQ A;  2LC1 A;  1KHX A;  1UJX A;  3S40 A;  3KT9 A;  1ZOQ A;  5JEL A;  2JQI A;  2EH0 A;  5JEO A;  1KHU A;  1WV3 A;  4JIV D;  2JQJ A;  2XXS A;  3VZC A;  1R21 A;  3ELS A;  4V24 A;  1G3G A;  2AFF A;  3I0M A;  5BVI A;  1MR1 A;  3VPY A;  3UMZ A;  1U7F B;  1LGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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