1YJNH

Crystal structure of clindamycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 37
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yjnH00
3CCMH 1VQ7H 1JJ2H 3J7ZM 3G4SH 1Q81J 1K8AJ 2QEXH 1Q82J 1K9MJ 1VQMH 3OW2H 1YITH 1YI2H 1WKIA 3I55H 3CCUH 4IO9J 1VQ4H 2ZJPJ 1NJIJ 4UY8M 4WF9J 1YJNH 1S72H 1QVGH 1N8RJ 1VQNH 1VQ6H 1M1KJ 3CD6H 3CCEH 1K73J 5GAGN 1VQ8H 1YJ9H 5DM7J 1Y69K 4WFAJ 3CCVH 1KD1J 2ZJRJ 4WFBJ 3CCQH 3CMAH 4WCEJ 1YIJH 1QVFH 2OTJH 1W2BH 3CCRH 5MLCO 5JVGJ 5JVHJ 1VQOH 3G71H 2PA2A 1VQ5H 5H1SO 2QA4H 4IOCJ 5GADN 5AN9F 1VQKH 3PIPJ 1VQLH 1KQSH 3CC7H 4U67J 1YHQH 3CCLH 3CCSH 3CPWH 1Q86J 5GAHN 3PIOJ 3G6EH 3I56H 2ZJQJ 5GAEN 5DM6J 3CC4H 2OTLH 3CF5J 5HL7J 3CMEH 1M90J 1KC8J 1Q7YJ 3CCJH 1YJWH 4WFNJ 1VQ9H 4IOAJ 3CXCH 3DLLJ 3CC2H 1VQPH
chains in the Genus database with same CATH superfamily
3CCMH 1DGJA 2W54B 3EUB4 3NVWC 3RPFA 2B7QA 5AYXA 1VQ7H 1JJ2H 3J7ZM 4ZOHA 3G4SH 4GA4A 5EY3A 1Q81J 3NVYC 5HUPA 1K8AJ 2QEXH 5AYYA 2JBMA 1N61B 3C2OA 5MPOC 1Q82J 1K9MJ 1VQMH 3OW2H 1ZXIB 1YITH 1YI2H 1WKIA 3I55H 3CCUH 4IO9J 3L4PA 3NRZC 1VQ4H 5EP8A 1YTEA 2ZJPJ 3ETRC 1NJIJ 4UY8M 4WF9J 1FFUB 3NVZC 1YJNH 4GA6A 1S72H 1QVGH 2WK6A 1FMAE 1N8RJ 1FIQC 1JRPB 1BRWA 4KWWA 1VQNH 1VQ6H 1M1KJ 3CD6H 1N5WB 4US9A 5AYZA 3CCEH 1K73J 5GAGN 1VQ8H 4C80A 1YJ9H 5DM7J 2B7NA 2W3RB 4YEKA 1Y69K 2J0FA 4WFAJ 1X1OA 3CCVH 1FM0E 3B9JC 3C2RA 1SIJA 1KD1J 2ZJRJ 4WFBJ 3CCQH 4EAFA 1N62B 1FO4A 3C2EA 1N63B 3CMAH 4WCEJ 1YIJH 1QVFH 2TPTA 3BIIE 2OTJH 1W2BH 3CCRH 5MLCO 5JVGJ 2DSJA 1QPQA 1N5XA 3GNNA 5JVHJ 3AMZA 1VQOH 3G71H 2PA2A 3C2FA 1QPOA 1N60B 1OTPA 4USAA 3FC4A 4KWVA 1VQ5H 1YTDA 1JROB 5H1SO 4AP8A 1V97A 3PAJA 2QA4H 4IOCJ 1AZYA 3NS1C 2OMDA 5HUOA 3VMMA 5GADN 5AN9F 3NVVC 3TQVA 4GA5A 1VQKH 3PIPJ 1QPRA 1VQLH 4C7YA 2I14A 2I1OA 1VLBA 3WO1A 4U67J 3L0GA 1YHQH 3C2VA 3CCLH 1KQSH 3CC7H 5HULA 3AM9A 3CCSH 1QPNA 4EADA 3CPWH 1QAPA 1UOUA 1Q86J 2B7PA 5GAHN 3PIOJ 1YTKA 3FAHA 3G6EH 1RM6A 3I56H 2ZJQJ 5GAEN 5DM6J 3CC4H 2OTLH 3CF5J 4US8A 1VDVA 3SR6C 5HL7J 3CMEH 1SB3A 4YYYA 2WP4A 2E3TA 1FFVB 3WNZA 1M90J 4XR5A 3AN1A 2W3SB 4X46A 1KC8J 1Q7YJ 1O4UA 3CCJH 2W55B 1YJWH 4WFNJ 1VQ9H 4LHMA 1NVJA 4I9AA 3WO0A 4IOAJ 1NVIE 2Q5WE 2QIEA 4C7ZA 3CXCH 3DLLJ 3H5QA 3CC2H 1WYGA 1VQPH 2WK5A
chains in the Genus database with same CATH topology
3CCMH 1VQ7H 1JJ2H 3J7ZM 3G4SH 1Q81J 1K8AJ 2QEXH 1Q82J 1K9MJ 1VQMH 3OW2H 1YITH 1YI2H 1WKIA 3I55H 3CCUH 4IO9J 1VQ4H 2ZJPJ 1NJIJ 4UY8M 4WF9J 1YJNH 1S72H 1QVGH 1N8RJ 1VQNH 1VQ6H 1M1KJ 3CD6H 3CCEH 1K73J 5GAGN 1VQ8H 1YJ9H 5DM7J 1Y69K 4WFAJ 3CCVH 1KD1J 2ZJRJ 4WFBJ 3CCQH 3CMAH 4WCEJ 1YIJH 1QVFH 2OTJH 1W2BH 3CCRH 5MLCO 5JVGJ 5JVHJ 1VQOH 3G71H 2PA2A 1VQ5H 5H1SO 2QA4H 4IOCJ 5GADN 5AN9F 1VQKH 3PIPJ 1VQLH 1KQSH 3CC7H 4U67J 1YHQH 3CCLH 3CCSH 3CPWH 1Q86J 5GAHN 3PIOJ 3G6EH 3I56H 2ZJQJ 5GAEN 5DM6J 3CC4H 2OTLH 3CF5J 5HL7J 3CMEH 1M90J 1KC8J 1Q7YJ 3CCJH 1YJWH 4WFNJ 1VQ9H 4IOAJ 3CXCH 3DLLJ 3CC2H 1VQPH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCM H;  1VQ7 H;  1JJ2 H;  3J7Z M;  3G4S H;  1Q81 J;  1K8A J;  2QEX H;  1Q82 J;  1K9M J;  1VQM H;  3OW2 H;  1YIT H;  1YI2 H;  1WKI A;  3I55 H;  3CCU H;  4IO9 J;  1VQ4 H;  2ZJP J;  1NJI J;  4UY8 M;  4WF9 J;  1YJN H;  1S72 H;  1QVG H;  1N8R J;  1VQN H;  1VQ6 H;  1M1K J;  3CD6 H;  3CCE H;  1K73 J;  5GAG N;  1VQ8 H;  1YJ9 H;  5DM7 J;  1Y69 K;  4WFA J;  3CCV H;  1KD1 J;  2ZJR J;  4WFB J;  3CCQ H;  3CMA H;  4WCE J;  1YIJ H;  1QVF H;  2OTJ H;  1W2B H;  3CCR H;  5MLC O;  5JVG J;  5JVH J;  1VQO H;  3G71 H;  2PA2 A;  1VQ5 H;  5H1S O;  2QA4 H;  4IOC J;  5GAD N;  5AN9 F;  1VQK H;  3PIP J;  1VQL H;  1KQS H;  3CC7 H;  4U67 J;  1YHQ H;  3CCL H;  3CCS H;  3CPW H;  1Q86 J;  5GAH N;  3PIO J;  3G6E H;  3I56 H;  2ZJQ J;  5GAE N;  5DM6 J;  3CC4 H;  2OTL H;  3CF5 J;  5HL7 J;  3CME H;  1M90 J;  1KC8 J;  1Q7Y J;  3CCJ H;  1YJW H;  4WFN J;  1VQ9 H;  4IOA J;  3CXC H;  3DLL J;  3CC2 H;  1VQP H; 
#chains in the Genus database with same CATH topology
 3CCM H;  1DGJ A;  2W54 B;  3EUB 4;  3NVW C;  3RPF A;  2B7Q A;  5AYX A;  1VQ7 H;  1JJ2 H;  3J7Z M;  4ZOH A;  3G4S H;  4GA4 A;  5EY3 A;  1Q81 J;  3NVY C;  5HUP A;  1K8A J;  2QEX H;  5AYY A;  2JBM A;  1N61 B;  3C2O A;  5MPO C;  1Q82 J;  1K9M J;  1VQM H;  3OW2 H;  1ZXI B;  1YIT H;  1YI2 H;  1WKI A;  3I55 H;  3CCU H;  4IO9 J;  3L4P A;  3NRZ C;  1VQ4 H;  5EP8 A;  1YTE A;  2ZJP J;  3ETR C;  1NJI J;  4UY8 M;  4WF9 J;  1FFU B;  3NVZ C;  1YJN H;  4GA6 A;  1S72 H;  1QVG H;  2WK6 A;  1FMA E;  1N8R J;  1FIQ C;  1JRP B;  1BRW A;  4KWW A;  1VQN H;  1VQ6 H;  1M1K J;  3CD6 H;  1N5W B;  4US9 A;  5AYZ A;  3CCE H;  1K73 J;  5GAG N;  1VQ8 H;  4C80 A;  1YJ9 H;  5DM7 J;  2B7N A;  2W3R B;  4YEK A;  1Y69 K;  2J0F A;  4WFA J;  1X1O A;  3CCV H;  1FM0 E;  3B9J C;  3C2R A;  1SIJ A;  1KD1 J;  2ZJR J;  4WFB J;  3CCQ H;  4EAF A;  1N62 B;  1FO4 A;  3C2E A;  1N63 B;  3CMA H;  4WCE J;  1YIJ H;  1QVF H;  2TPT A;  3BII E;  2OTJ H;  1W2B H;  3CCR H;  5MLC O;  5JVG J;  2DSJ A;  1QPQ A;  1N5X A;  3GNN A;  5JVH J;  3AMZ A;  1VQO H;  3G71 H;  2PA2 A;  3C2F A;  1QPO A;  1N60 B;  1OTP A;  4USA A;  3FC4 A;  4KWV A;  1VQ5 H;  1YTD A;  1JRO B;  5H1S O;  4AP8 A;  1V97 A;  3PAJ A;  2QA4 H;  4IOC J;  1AZY A;  3NS1 C;  2OMD A;  5HUO A;  3VMM A;  5GAD N;  5AN9 F;  3NVV C;  3TQV A;  4GA5 A;  1VQK H;  3PIP J;  1QPR A;  1VQL H;  4C7Y A;  2I14 A;  2I1O A;  1VLB A;  3WO1 A;  4U67 J;  3L0G A;  1YHQ H;  3C2V A;  3CCL H;  1KQS H;  3CC7 H;  5HUL A;  3AM9 A;  3CCS H;  1QPN A;  4EAD A;  3CPW H;  1QAP A;  1UOU A;  1Q86 J;  2B7P A;  5GAH N;  3PIO J;  1YTK A;  3FAH A;  3G6E H;  1RM6 A;  3I56 H;  2ZJQ J;  5GAE N;  5DM6 J;  3CC4 H;  2OTL H;  3CF5 J;  4US8 A;  1VDV A;  3SR6 C;  5HL7 J;  3CME H;  1SB3 A;  4YYY A;  2WP4 A;  2E3T A;  1FFV B;  3WNZ A;  1M90 J;  4XR5 A;  3AN1 A;  2W3S B;  4X46 A;  1KC8 J;  1Q7Y J;  1O4U A;  3CCJ H;  2W55 B;  1YJW H;  4WFN J;  1VQ9 H;  4LHM A;  1NVJ A;  4I9A A;  3WO0 A;  4IOA J;  1NVI E;  2Q5W E;  2QIE A;  4C7Z A;  3CXC H;  3DLL J;  3H5Q A;  3CC2 H;  1WYG A;  1VQP H;  2WK5 A; 
#chains in the Genus database with same CATH homology
 3CCM H;  1VQ7 H;  1JJ2 H;  3J7Z M;  3G4S H;  1Q81 J;  1K8A J;  2QEX H;  1Q82 J;  1K9M J;  1VQM H;  3OW2 H;  1YIT H;  1YI2 H;  1WKI A;  3I55 H;  3CCU H;  4IO9 J;  1VQ4 H;  2ZJP J;  1NJI J;  4UY8 M;  4WF9 J;  1YJN H;  1S72 H;  1QVG H;  1N8R J;  1VQN H;  1VQ6 H;  1M1K J;  3CD6 H;  3CCE H;  1K73 J;  5GAG N;  1VQ8 H;  1YJ9 H;  5DM7 J;  1Y69 K;  4WFA J;  3CCV H;  1KD1 J;  2ZJR J;  4WFB J;  3CCQ H;  3CMA H;  4WCE J;  1YIJ H;  1QVF H;  2OTJ H;  1W2B H;  3CCR H;  5MLC O;  5JVG J;  5JVH J;  1VQO H;  3G71 H;  2PA2 A;  1VQ5 H;  5H1S O;  2QA4 H;  4IOC J;  5GAD N;  5AN9 F;  1VQK H;  3PIP J;  1VQL H;  1KQS H;  3CC7 H;  4U67 J;  1YHQ H;  3CCL H;  3CCS H;  3CPW H;  1Q86 J;  5GAH N;  3PIO J;  3G6E H;  3I56 H;  2ZJQ J;  5GAE N;  5DM6 J;  3CC4 H;  2OTL H;  3CF5 J;  5HL7 J;  3CME H;  1M90 J;  1KC8 J;  1Q7Y J;  3CCJ H;  1YJW H;  4WFN J;  1VQ9 H;  4IOA J;  3CXC H;  3DLL J;  3CC2 H;  1VQP H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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