1YJWW

Crystal structure of quinupristin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 23S RIBOSOMAL RNA
publication title Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance.
pubmed doi rcsb
total genus 44
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2005-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1yjwW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1yjwW01
1YJWW 1N8RX 3DLLW 1M1KX 1VQLW 3G6EW 1VQKW 1QVFV 3J7ZZ 5HL7W 3CMEW 3I55W 1M90X 1K8AX 2QEXW 5JVHW 3PIPW 1VQ5W 4WFAW 1S72W 3CCLW 1YITW 3CPWV 1VQPW 2OTJW 1YJ9W 3CXCV 1W2BV 1Q81X 5GAGa 4IOCW 3G71W 3G4SW 1KQSV 3CCJW 3PIOW 1BXYA 1NJIX 3I56W 1YIJW 1Q7YX 4WF9W 3CC2W 5JVGW 1Q86X 1K9MX 1VQ9W 1VQMW 3CC7W 1JJ2V 4WCEW 1QVGV 3CCVW 4WFNW 1KD1X 1VQ4W 5GADa 3CD6W 2ZJQW 1Q82X 4UY8Z 1KC8X 4WFBW 1VQ8W 2ZJPW 3CCEW 4IOAW 5GAHa 3CCQW 2OTLW 3CF5W 1YI2W 3CCSW 5GAEa 3CMAW 1VQNW 3CCUW 2ZJRW 5DM7W 2QA4W 1K73X 5DM6W 1VQOW 1YHQW 1VQ7W 3CCMW 1YJNW 3CC4W 3CCRW 3OW2V 1VQ6W 4U67W 4IO9W
chains in the Genus database with same CATH superfamily
1YJWW 5M19A 4DKIA 1N8RX 3DLLW 1MBUC 1RQSA 1M1KX 1VQLW 3G6EW 1VQKW 1QVFV 3J7ZZ 5HL7W 3CMEW 3I55W 1M90X 3W7TA 1K8AX 3O2OA 2QEXW 1RQVA 5JVHW 3PIPW 3W7WA 3D3IA 1VQQA 3GQ0A 3ZG5A 1VQ5W 1DD3A 4WFAW 5CA3A 1S72W 1DD4A 1MG9A 1MWUA 3CCLW 1YITW 1MWSA 3CPWV 1VQPW 1R6QC 2OTJW 1YJ9W 3CXCV 1W2BV 1Q81X 5GW7A 5GAGa 4IOCW 3G71W 3G4SW 3O2BA 1KQSV 4CJNA 3CCJW 3G1BA 3PIOW 1BXYA 3DNJA 1NJIX 3I56W 1YIJW 1Q7YX 1LZWA 1MWTA 4YKAA 1MBVB 3G3PA 4WF9W 3CC2W 5JVGW 5M18A 2WA9A 3GW1A 1Q86X 1K9MX 4YJXA 1VQ9W 1VQMW 3CC7W 3O1FA 4C1NA 5M1AA 1JJ2V 4BL3A 4WCEW 3O2HA 1R6OC 3W7UA 1QVGV 3CCVW 4WFNW 3G19A 1KD1X 1VQ4W 5GADa 3CD6W 3GQ1A 2ZJQW 1Q82X 4UY8Z 1KC8X 4BL2A 4WFBW 2WA8A 1VQ8W 3W7SA 2ZJPW 1MBXC 3CCEW 4IOAW 2W9RA 5GAHa 4YJMA 1CTFA 3CCQW 2OTLW 3O1FB 3CF5W 1YI2W 3CCSW 4CPKA 5GAEa 3CMAW 1VQNW 3CCUW 1RQUA 3ZFZA 2ZJRW 5DM7W 2QA4W 1K73X 3ZG0A 5DM6W 1VQOW 1YHQW 1VQ7W 3CCMW 1YJNW 3CC4W 1MWRA 3CCRW 3OW2V 1VQ6W 4U67W 3W7XA 4IO9W
chains in the Genus database with same CATH topology
1YJWW 1N8RX 3DLLW 1M1KX 1VQLW 3G6EW 1VQKW 1QVFV 3J7ZZ 5HL7W 3CMEW 3I55W 1M90X 1K8AX 2QEXW 5JVHW 3PIPW 1VQ5W 4WFAW 1S72W 3CCLW 1YITW 3CPWV 1VQPW 2OTJW 1YJ9W 3CXCV 1W2BV 1Q81X 5GAGa 4IOCW 3G71W 3G4SW 1KQSV 3CCJW 3PIOW 1BXYA 1NJIX 3I56W 1YIJW 1Q7YX 4WF9W 3CC2W 5JVGW 1Q86X 1K9MX 1VQ9W 1VQMW 3CC7W 4C1NA 1JJ2V 4WCEW 1QVGV 3CCVW 4WFNW 1KD1X 1VQ4W 5GADa 3CD6W 2ZJQW 1Q82X 4UY8Z 1KC8X 4WFBW 1VQ8W 2ZJPW 3CCEW 4IOAW 5GAHa 3CCQW 2OTLW 3CF5W 1YI2W 3CCSW 5GAEa 3CMAW 1VQNW 3CCUW 2ZJRW 5DM7W 2QA4W 1K73X 5DM6W 1VQOW 1YHQW 1VQ7W 3CCMW 1YJNW 3CC4W 3CCRW 3OW2V 1VQ6W 4U67W 4IO9W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJW W;  1N8R X;  3DLL W;  1M1K X;  1VQL W;  3G6E W;  1VQK W;  1QVF V;  3J7Z Z;  5HL7 W;  3CME W;  3I55 W;  1M90 X;  1K8A X;  2QEX W;  5JVH W;  3PIP W;  1VQ5 W;  4WFA W;  1S72 W;  3CCL W;  1YIT W;  3CPW V;  1VQP W;  2OTJ W;  1YJ9 W;  3CXC V;  1W2B V;  1Q81 X;  5GAG a;  4IOC W;  3G71 W;  3G4S W;  1KQS V;  3CCJ W;  3PIO W;  1BXY A;  1NJI X;  3I56 W;  1YIJ W;  1Q7Y X;  4WF9 W;  3CC2 W;  5JVG W;  1Q86 X;  1K9M X;  1VQ9 W;  1VQM W;  3CC7 W;  1JJ2 V;  4WCE W;  1QVG V;  3CCV W;  4WFN W;  1KD1 X;  1VQ4 W;  5GAD a;  3CD6 W;  2ZJQ W;  1Q82 X;  4UY8 Z;  1KC8 X;  4WFB W;  1VQ8 W;  2ZJP W;  3CCE W;  4IOA W;  5GAH a;  3CCQ W;  2OTL W;  3CF5 W;  1YI2 W;  3CCS W;  5GAE a;  3CMA W;  1VQN W;  3CCU W;  2ZJR W;  5DM7 W;  2QA4 W;  1K73 X;  5DM6 W;  1VQO W;  1YHQ W;  1VQ7 W;  3CCM W;  1YJN W;  3CC4 W;  3CCR W;  3OW2 V;  1VQ6 W;  4U67 W;  4IO9 W; 
#chains in the Genus database with same CATH topology
 1YJW W;  5M19 A;  4DKI A;  1N8R X;  3DLL W;  1MBU C;  1RQS A;  1M1K X;  1VQL W;  3G6E W;  1VQK W;  1QVF V;  3J7Z Z;  5HL7 W;  3CME W;  3I55 W;  1M90 X;  3W7T A;  1K8A X;  3O2O A;  2QEX W;  1RQV A;  5JVH W;  3PIP W;  3W7W A;  3D3I A;  1VQQ A;  3GQ0 A;  3ZG5 A;  1VQ5 W;  1DD3 A;  4WFA W;  5CA3 A;  1S72 W;  1DD4 A;  1MG9 A;  1MWU A;  3CCL W;  1YIT W;  1MWS A;  3CPW V;  1VQP W;  1R6Q C;  2OTJ W;  1YJ9 W;  3CXC V;  1W2B V;  1Q81 X;  5GW7 A;  5GAG a;  4IOC W;  3G71 W;  3G4S W;  3O2B A;  1KQS V;  4CJN A;  3CCJ W;  3G1B A;  3PIO W;  1BXY A;  3DNJ A;  1NJI X;  3I56 W;  1YIJ W;  1Q7Y X;  1LZW A;  1MWT A;  4YKA A;  1MBV B;  3G3P A;  4WF9 W;  3CC2 W;  5JVG W;  5M18 A;  2WA9 A;  3GW1 A;  1Q86 X;  1K9M X;  4YJX A;  1VQ9 W;  1VQM W;  3CC7 W;  3O1F A;  4C1N A;  5M1A A;  1JJ2 V;  4BL3 A;  4WCE W;  3O2H A;  1R6O C;  3W7U A;  1QVG V;  3CCV W;  4WFN W;  3G19 A;  1KD1 X;  1VQ4 W;  5GAD a;  3CD6 W;  3GQ1 A;  2ZJQ W;  1Q82 X;  4UY8 Z;  1KC8 X;  4BL2 A;  4WFB W;  2WA8 A;  1VQ8 W;  3W7S A;  2ZJP W;  1MBX C;  3CCE W;  4IOA W;  2W9R A;  5GAH a;  4YJM A;  1CTF A;  3CCQ W;  2OTL W;  3O1F B;  3CF5 W;  1YI2 W;  3CCS W;  4CPK A;  5GAE a;  3CMA W;  1VQN W;  3CCU W;  1RQU A;  3ZFZ A;  2ZJR W;  5DM7 W;  2QA4 W;  1K73 X;  3ZG0 A;  5DM6 W;  1VQO W;  1YHQ W;  1VQ7 W;  3CCM W;  1YJN W;  3CC4 W;  1MWR A;  3CCR W;  3OW2 V;  1VQ6 W;  4U67 W;  3W7X A;  4IO9 W; 
#chains in the Genus database with same CATH homology
 1YJW W;  1N8R X;  3DLL W;  1M1K X;  1VQL W;  3G6E W;  1VQK W;  1QVF V;  3J7Z Z;  5HL7 W;  3CME W;  3I55 W;  1M90 X;  1K8A X;  2QEX W;  5JVH W;  3PIP W;  1VQ5 W;  4WFA W;  1S72 W;  3CCL W;  1YIT W;  3CPW V;  1VQP W;  2OTJ W;  1YJ9 W;  3CXC V;  1W2B V;  1Q81 X;  5GAG a;  4IOC W;  3G71 W;  3G4S W;  1KQS V;  3CCJ W;  3PIO W;  1BXY A;  1NJI X;  3I56 W;  1YIJ W;  1Q7Y X;  4WF9 W;  3CC2 W;  5JVG W;  1Q86 X;  1K9M X;  1VQ9 W;  1VQM W;  3CC7 W;  4C1N A;  1JJ2 V;  4WCE W;  1QVG V;  3CCV W;  4WFN W;  1KD1 X;  1VQ4 W;  5GAD a;  3CD6 W;  2ZJQ W;  1Q82 X;  4UY8 Z;  1KC8 X;  4WFB W;  1VQ8 W;  2ZJP W;  3CCE W;  4IOA W;  5GAH a;  3CCQ W;  2OTL W;  3CF5 W;  1YI2 W;  3CCS W;  5GAE a;  3CMA W;  1VQN W;  3CCU W;  2ZJR W;  5DM7 W;  2QA4 W;  1K73 X;  5DM6 W;  1VQO W;  1YHQ W;  1VQ7 W;  3CCM W;  1YJN W;  3CC4 W;  3CCR W;  3OW2 V;  1VQ6 W;  4U67 W;  4IO9 W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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