1YKLA

Protocatechuate 3,4-dioxygenase y408c mutant bound to dhb
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis
pubmed doi rcsb
source organism Pseudomonas putida
total genus 43
structure length 200
sequence length 200
chains with identical sequence C, E, G, I, K
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 1yklA00
3HJSA 4ILVA 1YKKB 2BUQA 3PCMA 4WHOA 1TMXA 2BUTA 4WHRA 3LKTA 3LMXM 4WHQA 1YKKA 4WHPA 1DLTA 2BUYA 3I51A 3I4VA 3LKTM 3PCHM 2AZQA 2PCDM 3HGIA 3N9TA 3PCBM 1S9AA 2BURB 2BV0A 3MFLA 2BUXA 3PCAM 3PCCM 2BUMA 2XSRA 1DMHA 1EOAB 3PCIA 2XSUA 1EO2B 1YKLB 3MI5A 3PCKA 1EOCB 1EOBA 2BURA 3PCDA 3PCMM 3MV6A 3PCIM 3PCNA 3HHYA 4WHSD 3MI5M 1DLQA 3PCDM 3MV6M 2BUVB 4ILTA 1EO2A 3T67A 3PCGA 3T67M 4WHSB 3PCEA 3PCGM 3TH1A 3O6RA 3MI1A 3PCFA 3PCLA 4WHOD 3MFLM 3O32A 1YKPB 4WHSA 2BUUB 3T63A 1YKOB 3PCKM 4WHPD 2BOYA 1EOAA 3PCNM 1YKNB 5TD3A 1YKLA 1YKPA 3O5UA 2XSVA 2BUUA 1EOCA 3MV4A 1YKMB 1YKOA 3HKPA 4WHQB 3MV4M 4WHPB 3LXVA 2BUYB 2BUVA 1YKNA 3LMXA 3PCEM 3LXVM 4WHRF 1DLMA 2BUZB 3PCJA 1YKMA 3HJQA 3MI1M 3PCHA 2BUWB 1EO9B 2PCDA 3PCLM 3PCFM 2BV0B 3PCJM 2BUXB 2BUMB 3HHXA 3I4YA 3PCBA 2BUQB 3T63M 2BUZA 3HJ8A 4WHOB 3O6JA 3PCAA 3PCCA 2BUTB 2BUWA 1EO9A 4WHRB 1EOBB
chains in the Genus database with same CATH superfamily
3HJSA 4ILVA 1YKKB 2BUQA 3PCMA 4WHOA 1TMXA 2BUTA 4WHRA 3LKTA 3LMXM 4WHQA 1YKKA 4WHPA 1DLTA 2BUYA 3I51A 3I4VA 3LKTM 3PCHM 2AZQA 2PCDM 3HGIA 3N9TA 3PCBM 1S9AA 2BURB 2BV0A 3MFLA 2BUXA 3PCAM 3PCCM 2BUMA 2XSRA 1DMHA 1EOAB 3PCIA 2XSUA 1EO2B 1YKLB 3MI5A 3PCKA 1EOCB 1EOBA 2BURA 3PCDA 3PCMM 3MV6A 3PCIM 3PCNA 3HHYA 4WHSD 3MI5M 1DLQA 3PCDM 3MV6M 2BUVB 4ILTA 1EO2A 3T67A 3PCGA 3T67M 4WHSB 3PCEA 3PCGM 3TH1A 3O6RA 3MI1A 3PCFA 3PCLA 4WHOD 3MFLM 3O32A 1YKPB 4WHSA 2BUUB 3T63A 1YKOB 3PCKM 4WHPD 2BOYA 1EOAA 3PCNM 1YKNB 5TD3A 1YKLA 1YKPA 3O5UA 2XSVA 2BUUA 1EOCA 3MV4A 1YKMB 1YKOA 3HKPA 4WHQB 3MV4M 4WHPB 3LXVA 2BUYB 2BUVA 1YKNA 3LMXA 3PCEM 3LXVM 4WHRF 1DLMA 2BUZB 3PCJA 1YKMA 3HJQA 3MI1M 3PCHA 2BUWB 1EO9B 2PCDA 3PCLM 3PCFM 2BV0B 3PCJM 2BUXB 2BUMB 3HHXA 3I4YA 3PCBA 2BUQB 3T63M 2BUZA 3HJ8A 4WHOB 3O6JA 3PCAA 3PCCA 2BUTB 2BUWA 1EO9A 4WHRB 1EOBB
chains in the Genus database with same CATH topology
3HJSA 4ILVA 1YKKB 2BUQA 3PCMA 4WHOA 1TMXA 2BUTA 4WHRA 3LKTA 3LMXM 4WHQA 1YKKA 4WHPA 1DLTA 2BUYA 3I51A 3I4VA 3LKTM 3PCHM 2AZQA 2PCDM 3HGIA 3N9TA 3PCBM 1S9AA 2BURB 2BV0A 3MFLA 2BUXA 3PCAM 3PCCM 2BUMA 2XSRA 1DMHA 1EOAB 3PCIA 2XSUA 1EO2B 1YKLB 3MI5A 3PCKA 1EOCB 1EOBA 2BURA 3PCDA 3PCMM 3MV6A 3PCIM 3PCNA 3HHYA 4WHSD 3MI5M 1DLQA 3PCDM 3MV6M 2BUVB 4ILTA 1EO2A 3T67A 3PCGA 3T67M 4WHSB 3PCEA 3PCGM 3TH1A 3O6RA 3MI1A 3PCFA 3PCLA 4WHOD 3MFLM 3O32A 1YKPB 4WHSA 2BUUB 3T63A 1YKOB 3PCKM 4WHPD 2BOYA 1EOAA 3PCNM 1YKNB 5TD3A 1YKLA 1YKPA 3O5UA 2XSVA 2BUUA 1EOCA 3MV4A 1YKMB 1YKOA 3HKPA 4WHQB 3MV4M 4WHPB 3LXVA 2BUYB 2BUVA 1YKNA 3LMXA 3PCEM 3LXVM 4WHRF 1DLMA 2BUZB 3PCJA 1YKMA 3HJQA 3MI1M 3PCHA 2BUWB 1EO9B 2PCDA 3PCLM 3PCFM 2BV0B 3PCJM 2BUXB 2BUMB 3HHXA 3I4YA 3PCBA 2BUQB 3T63M 2BUZA 3HJ8A 4WHOB 3O6JA 3PCAA 3PCCA 2BUTB 2BUWA 1EO9A 4WHRB 1EOBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HJS A;  4ILV A;  1YKK B;  2BUQ A;  3PCM A;  4WHO A;  1TMX A;  2BUT A;  4WHR A;  3LKT A;  3LMX M;  4WHQ A;  1YKK A;  4WHP A;  1DLT A;  2BUY A;  3I51 A;  3I4V A;  3LKT M;  3PCH M;  2AZQ A;  2PCD M;  3HGI A;  3N9T A;  3PCB M;  1S9A A;  2BUR B;  2BV0 A;  3MFL A;  2BUX A;  3PCA M;  3PCC M;  2BUM A;  2XSR A;  1DMH A;  1EOA B;  3PCI A;  2XSU A;  1EO2 B;  1YKL B;  3MI5 A;  3PCK A;  1EOC B;  1EOB A;  2BUR A;  3PCD A;  3PCM M;  3MV6 A;  3PCI M;  3PCN A;  3HHY A;  4WHS D;  3MI5 M;  1DLQ A;  3PCD M;  3MV6 M;  2BUV B;  4ILT A;  1EO2 A;  3T67 A;  3PCG A;  3T67 M;  4WHS B;  3PCE A;  3PCG M;  3TH1 A;  3O6R A;  3MI1 A;  3PCF A;  3PCL A;  4WHO D;  3MFL M;  3O32 A;  1YKP B;  4WHS A;  2BUU B;  3T63 A;  1YKO B;  3PCK M;  4WHP D;  2BOY A;  1EOA A;  3PCN M;  1YKN B;  5TD3 A;  1YKL A;  1YKP A;  3O5U A;  2XSV A;  2BUU A;  1EOC A;  3MV4 A;  1YKM B;  1YKO A;  3HKP A;  4WHQ B;  3MV4 M;  4WHP B;  3LXV A;  2BUY B;  2BUV A;  1YKN A;  3LMX A;  3PCE M;  3LXV M;  4WHR F;  1DLM A;  2BUZ B;  3PCJ A;  1YKM A;  3HJQ A;  3MI1 M;  3PCH A;  2BUW B;  1EO9 B;  2PCD A;  3PCL M;  3PCF M;  2BV0 B;  3PCJ M;  2BUX B;  2BUM B;  3HHX A;  3I4Y A;  3PCB A;  2BUQ B;  3T63 M;  2BUZ A;  3HJ8 A;  4WHO B;  3O6J A;  3PCA A;  3PCC A;  2BUT B;  2BUW A;  1EO9 A;  4WHR B;  1EOB B; 
#chains in the Genus database with same CATH topology
 3HJS A;  4ILV A;  1YKK B;  2BUQ A;  3PCM A;  4WHO A;  1TMX A;  2BUT A;  4WHR A;  3LKT A;  3LMX M;  4WHQ A;  1YKK A;  4WHP A;  1DLT A;  2BUY A;  3I51 A;  3I4V A;  3LKT M;  3PCH M;  2AZQ A;  2PCD M;  3HGI A;  3N9T A;  3PCB M;  1S9A A;  2BUR B;  2BV0 A;  3MFL A;  2BUX A;  3PCA M;  3PCC M;  2BUM A;  2XSR A;  1DMH A;  1EOA B;  3PCI A;  2XSU A;  1EO2 B;  1YKL B;  3MI5 A;  3PCK A;  1EOC B;  1EOB A;  2BUR A;  3PCD A;  3PCM M;  3MV6 A;  3PCI M;  3PCN A;  3HHY A;  4WHS D;  3MI5 M;  1DLQ A;  3PCD M;  3MV6 M;  2BUV B;  4ILT A;  1EO2 A;  3T67 A;  3PCG A;  3T67 M;  4WHS B;  3PCE A;  3PCG M;  3TH1 A;  3O6R A;  3MI1 A;  3PCF A;  3PCL A;  4WHO D;  3MFL M;  3O32 A;  1YKP B;  4WHS A;  2BUU B;  3T63 A;  1YKO B;  3PCK M;  4WHP D;  2BOY A;  1EOA A;  3PCN M;  1YKN B;  5TD3 A;  1YKL A;  1YKP A;  3O5U A;  2XSV A;  2BUU A;  1EOC A;  3MV4 A;  1YKM B;  1YKO A;  3HKP A;  4WHQ B;  3MV4 M;  4WHP B;  3LXV A;  2BUY B;  2BUV A;  1YKN A;  3LMX A;  3PCE M;  3LXV M;  4WHR F;  1DLM A;  2BUZ B;  3PCJ A;  1YKM A;  3HJQ A;  3MI1 M;  3PCH A;  2BUW B;  1EO9 B;  2PCD A;  3PCL M;  3PCF M;  2BV0 B;  3PCJ M;  2BUX B;  2BUM B;  3HHX A;  3I4Y A;  3PCB A;  2BUQ B;  3T63 M;  2BUZ A;  3HJ8 A;  4WHO B;  3O6J A;  3PCA A;  3PCC A;  2BUT B;  2BUW A;  1EO9 A;  4WHR B;  1EOB B; 
#chains in the Genus database with same CATH homology
 3HJS A;  4ILV A;  1YKK B;  2BUQ A;  3PCM A;  4WHO A;  1TMX A;  2BUT A;  4WHR A;  3LKT A;  3LMX M;  4WHQ A;  1YKK A;  4WHP A;  1DLT A;  2BUY A;  3I51 A;  3I4V A;  3LKT M;  3PCH M;  2AZQ A;  2PCD M;  3HGI A;  3N9T A;  3PCB M;  1S9A A;  2BUR B;  2BV0 A;  3MFL A;  2BUX A;  3PCA M;  3PCC M;  2BUM A;  2XSR A;  1DMH A;  1EOA B;  3PCI A;  2XSU A;  1EO2 B;  1YKL B;  3MI5 A;  3PCK A;  1EOC B;  1EOB A;  2BUR A;  3PCD A;  3PCM M;  3MV6 A;  3PCI M;  3PCN A;  3HHY A;  4WHS D;  3MI5 M;  1DLQ A;  3PCD M;  3MV6 M;  2BUV B;  4ILT A;  1EO2 A;  3T67 A;  3PCG A;  3T67 M;  4WHS B;  3PCE A;  3PCG M;  3TH1 A;  3O6R A;  3MI1 A;  3PCF A;  3PCL A;  4WHO D;  3MFL M;  3O32 A;  1YKP B;  4WHS A;  2BUU B;  3T63 A;  1YKO B;  3PCK M;  4WHP D;  2BOY A;  1EOA A;  3PCN M;  1YKN B;  5TD3 A;  1YKL A;  1YKP A;  3O5U A;  2XSV A;  2BUU A;  1EOC A;  3MV4 A;  1YKM B;  1YKO A;  3HKP A;  4WHQ B;  3MV4 M;  4WHP B;  3LXV A;  2BUY B;  2BUV A;  1YKN A;  3LMX A;  3PCE M;  3LXV M;  4WHR F;  1DLM A;  2BUZ B;  3PCJ A;  1YKM A;  3HJQ A;  3MI1 M;  3PCH A;  2BUW B;  1EO9 B;  2PCD A;  3PCL M;  3PCF M;  2BV0 B;  3PCJ M;  2BUX B;  2BUM B;  3HHX A;  3I4Y A;  3PCB A;  2BUQ B;  3T63 M;  2BUZ A;  3HJ8 A;  4WHO B;  3O6J A;  3PCA A;  3PCC A;  2BUT B;  2BUW A;  1EO9 A;  4WHR B;  1EOB B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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