1YKTB

Trypsin/bpti complex mutant
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
56
structure length
56
Chain Sequence
RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Trypsin II
publication title Partially folded bovine pancreatic trypsin inhibitor analogues attain fully native structures when co-crystallized with S195A rat trypsin
pubmed doi rcsb
source organism Rattus norvegicus
total genus 9
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 2005-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00014 Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domain 1yktB00
3BYBA 5C67C 2ZJXA 2KCRA 1DEMA 2DDIA 2W8XA 1BTIA 3LDMA 1TPAI 3U1JE 3FP8I 3AUBA 2KAII 1Y62A 3WNYA 6PTIA 1QLQA 1EJMB 2FI3I 2M01A 4BD9B 1P2QB 1JV8A 1OA65 4DTGK 2R9PE 3BTFI 4Y11I 2FI4I 7PTIA 1P2MB 4BNRI 1BF0A 3BTHI 4Y0ZI 3LDIA 2IJOI 2M99A 2TGPI 1TOCR 3L33E 1P2JI 5JB5A 1FANA 1K6UA 3CI7A 1BRCI 4U32X 3FP6I 4WWYC 2FTMB 3T62D 1TFXC 3AUHA 1JV9A 3FP7J 3TGII 1FAKI 1AALA 8PTIA 2DDJA 3OTJI 3P95E 1DENA 4DG4C 4ISNB 2LFKA 3TPII 1BZ5A 1NAGA 3AUGA 1PITA 3P92E 1EAWB 9PTIA 1YKTB 1UUBA 1YC0I 3BTKI 1F7ZI 3OFWA 3BTWI 3BTGI 2ZVXA 1D0DA 2ODYE 1BHCA 2UUXA 3GYMI 1BPTA 3AUEA 1JC6A 1KNTA 4WXVC 1MTND 2UUYB 1SHPA 1BUNB 1T8LB 1T8NB 3M7QB 1ADZA 2FTLI 1UUAA 2RA3C 1IRHA 1LD5A 4PTIA 1P2OB 5JB7A 3UIRC 5JB6A 1BZXI 1YLCB 1FY8I 1P2KI 4ISOB 2HEXA 1T7CB 4TPII 1G6XA 1BTHP 4Y0YI 4NTYB 4NTWB 1CA0D 1KTHA 1T8OB 1AAPA 3BTMI 3UOUB 3BTQI 4NTXB 4ISLB 4U30W 3TGKI 1F5RI 1BRBI 3AUCA 5JB4A 3AUIA 3TGJI 3BTTI 3L3TE 1YLDB 1CBWD 1BIKA 2KNTA 1LD6A 4BQDA 1TAPA 1P2NB 1DTXA 2JOTA 1TCPA 3AUDA 1D0DB 5PTIA 2LFLA 3D65I 1BPIA 1T8MB 1ZJDB 3BTEI 4Y10I 2PTCI 3LDJA 1B0CA 3BTDI 1KUNA 2J6DA 1DTKA 2CA7A 1TAWB 1P2II 1OA55 1CO7I 2FI5I 1KIGI 2TPII 1ZR0B
chains in the Genus database with same CATH superfamily
3BYBA 5C67C 2ZJXA 2KCRA 1DEMA 2DDIA 2W8XA 1BTIA 3LDMA 1TPAI 3U1JE 3FP8I 3AUBA 2KAII 1Y62A 3WNYA 6PTIA 1QLQA 1EJMB 2FI3I 2M01A 4BD9B 1P2QB 1JV8A 1OA65 4DTGK 2R9PE 3BTFI 4Y11I 2FI4I 7PTIA 1P2MB 4BNRI 1BF0A 3BTHI 4Y0ZI 3LDIA 2IJOI 2M99A 2TGPI 1TOCR 3L33E 1P2JI 5JB5A 1FANA 1K6UA 3CI7A 1BRCI 4U32X 3FP6I 4WWYC 2FTMB 3T62D 1TFXC 3AUHA 1JV9A 3FP7J 3TGII 1FAKI 1AALA 8PTIA 2DDJA 3OTJI 3P95E 1DENA 4DG4C 4ISNB 2LFKA 3TPII 1BZ5A 1NAGA 3AUGA 1PITA 3P92E 1EAWB 9PTIA 1YKTB 1UUBA 1YC0I 3BTKI 1F7ZI 3OFWA 3BTWI 3BTGI 2ZVXA 1D0DA 2ODYE 1BHCA 2UUXA 3GYMI 1BPTA 3AUEA 1JC6A 1KNTA 4WXVC 1MTND 2UUYB 1SHPA 1BUNB 1T8LB 1T8NB 3M7QB 1ADZA 2FTLI 1UUAA 2RA3C 1IRHA 1LD5A 4PTIA 1P2OB 5JB7A 3UIRC 5JB6A 1BZXI 1YLCB 1FY8I 1P2KI 4ISOB 2HEXA 1T7CB 4TPII 1G6XA 1BTHP 4Y0YI 4NTYB 4NTWB 1CA0D 1KTHA 1T8OB 1AAPA 3BTMI 3UOUB 3BTQI 4NTXB 4ISLB 4U30W 3TGKI 1F5RI 1BRBI 3AUCA 5JB4A 3AUIA 3TGJI 3BTTI 3L3TE 1YLDB 1CBWD 1BIKA 2KNTA 1LD6A 4BQDA 1TAPA 1P2NB 1DTXA 2JOTA 1TCPA 3AUDA 1D0DB 5PTIA 2LFLA 3D65I 1BPIA 1T8MB 1ZJDB 3BTEI 4Y10I 2PTCI 3LDJA 1B0CA 3BTDI 1KUNA 2J6DA 1DTKA 2CA7A 1TAWB 1P2II 1OA55 1CO7I 2FI5I 1KIGI 2TPII 1ZR0B
chains in the Genus database with same CATH topology
3BYBA 5C67C 2ZJXA 2KCRA 1DEMA 2DDIA 2W8XA 1BTIA 3LDMA 1TPAI 3U1JE 3FP8I 3AUBA 2KAII 1Y62A 3WNYA 6PTIA 1QLQA 1EJMB 2FI3I 2M01A 4BD9B 1P2QB 1JV8A 1OA65 4DTGK 2R9PE 3BTFI 4Y11I 2FI4I 7PTIA 1P2MB 4BNRI 1BF0A 3BTHI 4Y0ZI 3LDIA 2IJOI 2M99A 2TGPI 1TOCR 3L33E 1P2JI 5JB5A 1FANA 1K6UA 3CI7A 1BRCI 4U32X 3FP6I 4WWYC 2FTMB 3T62D 1TFXC 3AUHA 1JV9A 3FP7J 3TGII 1FAKI 1AALA 8PTIA 2DDJA 3OTJI 3P95E 1DENA 4DG4C 4ISNB 2LFKA 3TPII 1BZ5A 1NAGA 3AUGA 1PITA 3P92E 1EAWB 9PTIA 1YKTB 1UUBA 1YC0I 3BTKI 1F7ZI 3OFWA 3BTWI 3BTGI 2ZVXA 1D0DA 2ODYE 1BHCA 2UUXA 3GYMI 1BPTA 3AUEA 1JC6A 1KNTA 4WXVC 1MTND 2UUYB 1SHPA 1BUNB 1T8LB 1T8NB 3M7QB 1ADZA 2FTLI 1UUAA 2RA3C 1IRHA 1LD5A 4PTIA 1P2OB 5JB7A 3UIRC 5JB6A 1BZXI 1YLCB 1FY8I 1P2KI 4ISOB 2HEXA 1T7CB 4TPII 1G6XA 1BTHP 4Y0YI 4NTYB 4NTWB 1CA0D 1KTHA 1T8OB 1AAPA 3BTMI 3UOUB 3BTQI 4NTXB 4ISLB 4U30W 3TGKI 1F5RI 1BRBI 3AUCA 5JB4A 3AUIA 3TGJI 3BTTI 3L3TE 1YLDB 1CBWD 1BIKA 2KNTA 1LD6A 4BQDA 1TAPA 1P2NB 1DTXA 2JOTA 1TCPA 3AUDA 1D0DB 5PTIA 2LFLA 3D65I 1BPIA 1T8MB 1ZJDB 3BTEI 4Y10I 2PTCI 3LDJA 1B0CA 3BTDI 1KUNA 2J6DA 1DTKA 2CA7A 1TAWB 1P2II 1OA55 1CO7I 2FI5I 1KIGI 2TPII 1ZR0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BYB A;  5C67 C;  2ZJX A;  2KCR A;  1DEM A;  2DDI A;  2W8X A;  1BTI A;  3LDM A;  1TPA I;  3U1J E;  3FP8 I;  3AUB A;  2KAI I;  1Y62 A;  3WNY A;  6PTI A;  1QLQ A;  1EJM B;  2FI3 I;  2M01 A;  4BD9 B;  1P2Q B;  1JV8 A;  1OA6 5;  4DTG K;  2R9P E;  3BTF I;  4Y11 I;  2FI4 I;  7PTI A;  1P2M B;  4BNR I;  1BF0 A;  3BTH I;  4Y0Z I;  3LDI A;  2IJO I;  2M99 A;  2TGP I;  1TOC R;  3L33 E;  1P2J I;  5JB5 A;  1FAN A;  1K6U A;  3CI7 A;  1BRC I;  4U32 X;  3FP6 I;  4WWY C;  2FTM B;  3T62 D;  1TFX C;  3AUH A;  1JV9 A;  3FP7 J;  3TGI I;  1FAK I;  1AAL A;  8PTI A;  2DDJ A;  3OTJ I;  3P95 E;  1DEN A;  4DG4 C;  4ISN B;  2LFK A;  3TPI I;  1BZ5 A;  1NAG A;  3AUG A;  1PIT A;  3P92 E;  1EAW B;  9PTI A;  1YKT B;  1UUB A;  1YC0 I;  3BTK I;  1F7Z I;  3OFW A;  3BTW I;  3BTG I;  2ZVX A;  1D0D A;  2ODY E;  1BHC A;  2UUX A;  3GYM I;  1BPT A;  3AUE A;  1JC6 A;  1KNT A;  4WXV C;  1MTN D;  2UUY B;  1SHP A;  1BUN B;  1T8L B;  1T8N B;  3M7Q B;  1ADZ A;  2FTL I;  1UUA A;  2RA3 C;  1IRH A;  1LD5 A;  4PTI A;  1P2O B;  5JB7 A;  3UIR C;  5JB6 A;  1BZX I;  1YLC B;  1FY8 I;  1P2K I;  4ISO B;  2HEX A;  1T7C B;  4TPI I;  1G6X A;  1BTH P;  4Y0Y I;  4NTY B;  4NTW B;  1CA0 D;  1KTH A;  1T8O B;  1AAP A;  3BTM I;  3UOU B;  3BTQ I;  4NTX B;  4ISL B;  4U30 W;  3TGK I;  1F5R I;  1BRB I;  3AUC A;  5JB4 A;  3AUI A;  3TGJ I;  3BTT I;  3L3T E;  1YLD B;  1CBW D;  1BIK A;  2KNT A;  1LD6 A;  4BQD A;  1TAP A;  1P2N B;  1DTX A;  2JOT A;  1TCP A;  3AUD A;  1D0D B;  5PTI A;  2LFL A;  3D65 I;  1BPI A;  1T8M B;  1ZJD B;  3BTE I;  4Y10 I;  2PTC I;  3LDJ A;  1B0C A;  3BTD I;  1KUN A;  2J6D A;  1DTK A;  2CA7 A;  1TAW B;  1P2I I;  1OA5 5;  1CO7 I;  2FI5 I;  1KIG I;  2TPI I;  1ZR0 B; 
#chains in the Genus database with same CATH topology
 3BYB A;  5C67 C;  2ZJX A;  2KCR A;  1DEM A;  2DDI A;  2W8X A;  1BTI A;  3LDM A;  1TPA I;  3U1J E;  3FP8 I;  3AUB A;  2KAI I;  1Y62 A;  3WNY A;  6PTI A;  1QLQ A;  1EJM B;  2FI3 I;  2M01 A;  4BD9 B;  1P2Q B;  1JV8 A;  1OA6 5;  4DTG K;  2R9P E;  3BTF I;  4Y11 I;  2FI4 I;  7PTI A;  1P2M B;  4BNR I;  1BF0 A;  3BTH I;  4Y0Z I;  3LDI A;  2IJO I;  2M99 A;  2TGP I;  1TOC R;  3L33 E;  1P2J I;  5JB5 A;  1FAN A;  1K6U A;  3CI7 A;  1BRC I;  4U32 X;  3FP6 I;  4WWY C;  2FTM B;  3T62 D;  1TFX C;  3AUH A;  1JV9 A;  3FP7 J;  3TGI I;  1FAK I;  1AAL A;  8PTI A;  2DDJ A;  3OTJ I;  3P95 E;  1DEN A;  4DG4 C;  4ISN B;  2LFK A;  3TPI I;  1BZ5 A;  1NAG A;  3AUG A;  1PIT A;  3P92 E;  1EAW B;  9PTI A;  1YKT B;  1UUB A;  1YC0 I;  3BTK I;  1F7Z I;  3OFW A;  3BTW I;  3BTG I;  2ZVX A;  1D0D A;  2ODY E;  1BHC A;  2UUX A;  3GYM I;  1BPT A;  3AUE A;  1JC6 A;  1KNT A;  4WXV C;  1MTN D;  2UUY B;  1SHP A;  1BUN B;  1T8L B;  1T8N B;  3M7Q B;  1ADZ A;  2FTL I;  1UUA A;  2RA3 C;  1IRH A;  1LD5 A;  4PTI A;  1P2O B;  5JB7 A;  3UIR C;  5JB6 A;  1BZX I;  1YLC B;  1FY8 I;  1P2K I;  4ISO B;  2HEX A;  1T7C B;  4TPI I;  1G6X A;  1BTH P;  4Y0Y I;  4NTY B;  4NTW B;  1CA0 D;  1KTH A;  1T8O B;  1AAP A;  3BTM I;  3UOU B;  3BTQ I;  4NTX B;  4ISL B;  4U30 W;  3TGK I;  1F5R I;  1BRB I;  3AUC A;  5JB4 A;  3AUI A;  3TGJ I;  3BTT I;  3L3T E;  1YLD B;  1CBW D;  1BIK A;  2KNT A;  1LD6 A;  4BQD A;  1TAP A;  1P2N B;  1DTX A;  2JOT A;  1TCP A;  3AUD A;  1D0D B;  5PTI A;  2LFL A;  3D65 I;  1BPI A;  1T8M B;  1ZJD B;  3BTE I;  4Y10 I;  2PTC I;  3LDJ A;  1B0C A;  3BTD I;  1KUN A;  2J6D A;  1DTK A;  2CA7 A;  1TAW B;  1P2I I;  1OA5 5;  1CO7 I;  2FI5 I;  1KIG I;  2TPI I;  1ZR0 B; 
#chains in the Genus database with same CATH homology
 3BYB A;  5C67 C;  2ZJX A;  2KCR A;  1DEM A;  2DDI A;  2W8X A;  1BTI A;  3LDM A;  1TPA I;  3U1J E;  3FP8 I;  3AUB A;  2KAI I;  1Y62 A;  3WNY A;  6PTI A;  1QLQ A;  1EJM B;  2FI3 I;  2M01 A;  4BD9 B;  1P2Q B;  1JV8 A;  1OA6 5;  4DTG K;  2R9P E;  3BTF I;  4Y11 I;  2FI4 I;  7PTI A;  1P2M B;  4BNR I;  1BF0 A;  3BTH I;  4Y0Z I;  3LDI A;  2IJO I;  2M99 A;  2TGP I;  1TOC R;  3L33 E;  1P2J I;  5JB5 A;  1FAN A;  1K6U A;  3CI7 A;  1BRC I;  4U32 X;  3FP6 I;  4WWY C;  2FTM B;  3T62 D;  1TFX C;  3AUH A;  1JV9 A;  3FP7 J;  3TGI I;  1FAK I;  1AAL A;  8PTI A;  2DDJ A;  3OTJ I;  3P95 E;  1DEN A;  4DG4 C;  4ISN B;  2LFK A;  3TPI I;  1BZ5 A;  1NAG A;  3AUG A;  1PIT A;  3P92 E;  1EAW B;  9PTI A;  1YKT B;  1UUB A;  1YC0 I;  3BTK I;  1F7Z I;  3OFW A;  3BTW I;  3BTG I;  2ZVX A;  1D0D A;  2ODY E;  1BHC A;  2UUX A;  3GYM I;  1BPT A;  3AUE A;  1JC6 A;  1KNT A;  4WXV C;  1MTN D;  2UUY B;  1SHP A;  1BUN B;  1T8L B;  1T8N B;  3M7Q B;  1ADZ A;  2FTL I;  1UUA A;  2RA3 C;  1IRH A;  1LD5 A;  4PTI A;  1P2O B;  5JB7 A;  3UIR C;  5JB6 A;  1BZX I;  1YLC B;  1FY8 I;  1P2K I;  4ISO B;  2HEX A;  1T7C B;  4TPI I;  1G6X A;  1BTH P;  4Y0Y I;  4NTY B;  4NTW B;  1CA0 D;  1KTH A;  1T8O B;  1AAP A;  3BTM I;  3UOU B;  3BTQ I;  4NTX B;  4ISL B;  4U30 W;  3TGK I;  1F5R I;  1BRB I;  3AUC A;  5JB4 A;  3AUI A;  3TGJ I;  3BTT I;  3L3T E;  1YLD B;  1CBW D;  1BIK A;  2KNT A;  1LD6 A;  4BQD A;  1TAP A;  1P2N B;  1DTX A;  2JOT A;  1TCP A;  3AUD A;  1D0D B;  5PTI A;  2LFL A;  3D65 I;  1BPI A;  1T8M B;  1ZJD B;  3BTE I;  4Y10 I;  2PTC I;  3LDJ A;  1B0C A;  3BTD I;  1KUN A;  2J6D A;  1DTK A;  2CA7 A;  1TAW B;  1P2I I;  1OA5 5;  1CO7 I;  2FI5 I;  1KIG I;  2TPI I;  1ZR0 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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