1YLCB

Trypsin/bpti complex mutant
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
56
structure length
52
Chain Sequence
RPDFLEPPYTGPCKARIIRYFYNAKAGLQTFVYGGCRAKRNNFKSAEDMRTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/inhibitor
molecule keywords Trypsin II
publication title Partially folded bovine pancreatic trypsin inhibitor analogues attain fully native structures when co-crystallized with S195A rat trypsin
pubmed doi rcsb
source organism Rattus norvegicus
total genus 5
structure length 52
sequence length 56
ec nomenclature
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00014 Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domain 1ylcB00
1TPAI 1BTHP 2CA7A 1KNTA 1F5RI 2JOTA 3AUDA 3AUCA 4BNRI 4NTWB 1LD6A 4BQDA 3M7QB 1DTKA 1UUAA 3LDJA 4WWYC 3BYBA 1BUNB 2ZVXA 4ISLB 1CO7I 1P2KI 2W8XA 1AAPA 3P95E 2FI3I 3LDMA 1EJMB 3BTEI 3BTGI 3WNYA 3L33E 1BPTA 9PTIA 1TAWB 1ZR0B 3AUHA 1UUBA 1OA55 1IRHA 1KUNA 1NAGA 1PITA 2FTMB 1JC6A 1P2JI 1T8MB 3AUGA 1DEMA 3UOUB 5JB7A 1BRCI 2TPII 2M01A 3AUIA 3BTQI 1BHCA 1SHPA 6PTIA 2FI5I 3UIRC 1QLQA 3TGJI 5JB6A 3D65I 4TPII 2IJOI 2M99A 3CI7A 1TAPA 1KIGI 4NTXB 1D0DA 2ZJXA 3FP7J 1CA0D 3FP6I 1DTXA 3T62D 3BTTI 4ISOB 2FTLI 3TGKI 4U32X 1P2MB 1YKTB 2J6DA 1T8LB 3LDIA 2TGPI 2UUXA 5C67C 2R9PE 1FAKI 3BTHI 1CBWD 1BPIA 7PTIA 1JV8A 1G6XA 1KTHA 4NTYB 4Y0ZI 3BTDI 1EAWB 1P2NB 1D0DB 1BRBI 1JV9A 1YLDB 1P2QB 1YC0I 1P2OB 2RA3C 2ODYE 4DG4C 2UUYB 3OTJI 1K6UA 1BF0A 1B0CA 2PTCI 1T8OB 2KAII 3BTFI 4PTIA 1BZXI 1OA65 3GYMI 4DTGK 1T8NB 1YLCB 2DDIA 1LD5A 1T7CB 1FY8I 3FP8I 4ISNB 2FI4I 1MTND 1ADZA 1DENA 2LFLA 5PTIA 3TPII 2HEXA 4BD9B 2KNTA 2LFKA 1P2II 1F7ZI 3BTWI 3BTMI 5JB5A 3TGII 1TFXC 3L3TE 5JB4A 3OFWA 1AALA 1ZJDB 3AUEA 3P92E 4U30W 4Y11I 1BTIA 3BTKI 4Y0YI 4Y10I 1TOCR 1BIKA 1BZ5A 1FANA 1Y62A 3AUBA 3U1JE 8PTIA 2DDJA 1TCPA 2KCRA 4WXVC
chains in the Genus database with same CATH superfamily
1TPAI 1BTHP 2CA7A 1KNTA 1F5RI 2JOTA 3AUDA 3AUCA 4BNRI 4NTWB 1LD6A 4BQDA 3M7QB 1DTKA 1UUAA 3LDJA 4WWYC 3BYBA 1BUNB 2ZVXA 4ISLB 1CO7I 1P2KI 2W8XA 1AAPA 3P95E 2FI3I 3LDMA 1EJMB 3BTEI 3BTGI 3WNYA 3L33E 1BPTA 9PTIA 1TAWB 1ZR0B 3AUHA 1UUBA 1OA55 1IRHA 1KUNA 1NAGA 1PITA 2FTMB 1JC6A 1P2JI 1T8MB 3AUGA 1DEMA 3UOUB 5JB7A 1BRCI 2TPII 2M01A 3AUIA 3BTQI 1BHCA 1SHPA 6PTIA 2FI5I 3UIRC 1QLQA 3TGJI 5JB6A 3D65I 4TPII 2IJOI 2M99A 3CI7A 1TAPA 1KIGI 4NTXB 1D0DA 2ZJXA 3FP7J 1CA0D 3FP6I 1DTXA 3T62D 3BTTI 4ISOB 2FTLI 3TGKI 4U32X 1P2MB 1YKTB 2J6DA 1T8LB 3LDIA 2TGPI 2UUXA 5C67C 2R9PE 1FAKI 3BTHI 1CBWD 1BPIA 7PTIA 1JV8A 1G6XA 1KTHA 4NTYB 4Y0ZI 3BTDI 1EAWB 1P2NB 1D0DB 1BRBI 1JV9A 1YLDB 1P2QB 1YC0I 1P2OB 2RA3C 2ODYE 4DG4C 2UUYB 3OTJI 1K6UA 1BF0A 1B0CA 2PTCI 1T8OB 2KAII 3BTFI 4PTIA 1BZXI 1OA65 3GYMI 4DTGK 1T8NB 1YLCB 2DDIA 1LD5A 1T7CB 1FY8I 3FP8I 4ISNB 2FI4I 1MTND 1ADZA 1DENA 2LFLA 5PTIA 3TPII 2HEXA 4BD9B 2KNTA 2LFKA 1P2II 1F7ZI 3BTWI 3BTMI 5JB5A 3TGII 1TFXC 3L3TE 5JB4A 3OFWA 1AALA 1ZJDB 3AUEA 3P92E 4U30W 4Y11I 1BTIA 3BTKI 4Y0YI 4Y10I 1TOCR 1BIKA 1BZ5A 1FANA 1Y62A 3AUBA 3U1JE 8PTIA 2DDJA 1TCPA 2KCRA 4WXVC
chains in the Genus database with same CATH topology
1TPAI 1BTHP 2CA7A 1KNTA 1F5RI 2JOTA 3AUDA 3AUCA 4BNRI 4NTWB 1LD6A 4BQDA 3M7QB 1DTKA 1UUAA 3LDJA 4WWYC 3BYBA 1BUNB 2ZVXA 4ISLB 1CO7I 1P2KI 2W8XA 1AAPA 3P95E 2FI3I 3LDMA 1EJMB 3BTEI 3BTGI 3WNYA 3L33E 1BPTA 9PTIA 1TAWB 1ZR0B 3AUHA 1UUBA 1OA55 1IRHA 1KUNA 1NAGA 1PITA 2FTMB 1JC6A 1P2JI 1T8MB 3AUGA 1DEMA 3UOUB 5JB7A 1BRCI 2TPII 2M01A 3AUIA 3BTQI 1BHCA 1SHPA 6PTIA 2FI5I 3UIRC 1QLQA 3TGJI 5JB6A 3D65I 4TPII 2IJOI 2M99A 3CI7A 1TAPA 1KIGI 4NTXB 1D0DA 2ZJXA 3FP7J 1CA0D 3FP6I 1DTXA 3T62D 3BTTI 4ISOB 2FTLI 3TGKI 4U32X 1P2MB 1YKTB 2J6DA 1T8LB 3LDIA 2TGPI 2UUXA 5C67C 2R9PE 1FAKI 3BTHI 1CBWD 1BPIA 7PTIA 1JV8A 1G6XA 1KTHA 4NTYB 4Y0ZI 3BTDI 1EAWB 1P2NB 1D0DB 1BRBI 1JV9A 1YLDB 1P2QB 1YC0I 1P2OB 2RA3C 2ODYE 4DG4C 2UUYB 3OTJI 1K6UA 1BF0A 1B0CA 2PTCI 1T8OB 2KAII 3BTFI 4PTIA 1BZXI 1OA65 3GYMI 4DTGK 1T8NB 1YLCB 2DDIA 1LD5A 1T7CB 1FY8I 3FP8I 4ISNB 2FI4I 1MTND 1ADZA 1DENA 2LFLA 5PTIA 3TPII 2HEXA 4BD9B 2KNTA 2LFKA 1P2II 1F7ZI 3BTWI 3BTMI 5JB5A 3TGII 1TFXC 3L3TE 5JB4A 3OFWA 1AALA 1ZJDB 3AUEA 3P92E 4U30W 4Y11I 1BTIA 3BTKI 4Y0YI 4Y10I 1TOCR 1BIKA 1BZ5A 1FANA 1Y62A 3AUBA 3U1JE 8PTIA 2DDJA 1TCPA 2KCRA 4WXVC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TPA I;  1BTH P;  2CA7 A;  1KNT A;  1F5R I;  2JOT A;  3AUD A;  3AUC A;  4BNR I;  4NTW B;  1LD6 A;  4BQD A;  3M7Q B;  1DTK A;  1UUA A;  3LDJ A;  4WWY C;  3BYB A;  1BUN B;  2ZVX A;  4ISL B;  1CO7 I;  1P2K I;  2W8X A;  1AAP A;  3P95 E;  2FI3 I;  3LDM A;  1EJM B;  3BTE I;  3BTG I;  3WNY A;  3L33 E;  1BPT A;  9PTI A;  1TAW B;  1ZR0 B;  3AUH A;  1UUB A;  1OA5 5;  1IRH A;  1KUN A;  1NAG A;  1PIT A;  2FTM B;  1JC6 A;  1P2J I;  1T8M B;  3AUG A;  1DEM A;  3UOU B;  5JB7 A;  1BRC I;  2TPI I;  2M01 A;  3AUI A;  3BTQ I;  1BHC A;  1SHP A;  6PTI A;  2FI5 I;  3UIR C;  1QLQ A;  3TGJ I;  5JB6 A;  3D65 I;  4TPI I;  2IJO I;  2M99 A;  3CI7 A;  1TAP A;  1KIG I;  4NTX B;  1D0D A;  2ZJX A;  3FP7 J;  1CA0 D;  3FP6 I;  1DTX A;  3T62 D;  3BTT I;  4ISO B;  2FTL I;  3TGK I;  4U32 X;  1P2M B;  1YKT B;  2J6D A;  1T8L B;  3LDI A;  2TGP I;  2UUX A;  5C67 C;  2R9P E;  1FAK I;  3BTH I;  1CBW D;  1BPI A;  7PTI A;  1JV8 A;  1G6X A;  1KTH A;  4NTY B;  4Y0Z I;  3BTD I;  1EAW B;  1P2N B;  1D0D B;  1BRB I;  1JV9 A;  1YLD B;  1P2Q B;  1YC0 I;  1P2O B;  2RA3 C;  2ODY E;  4DG4 C;  2UUY B;  3OTJ I;  1K6U A;  1BF0 A;  1B0C A;  2PTC I;  1T8O B;  2KAI I;  3BTF I;  4PTI A;  1BZX I;  1OA6 5;  3GYM I;  4DTG K;  1T8N B;  1YLC B;  2DDI A;  1LD5 A;  1T7C B;  1FY8 I;  3FP8 I;  4ISN B;  2FI4 I;  1MTN D;  1ADZ A;  1DEN A;  2LFL A;  5PTI A;  3TPI I;  2HEX A;  4BD9 B;  2KNT A;  2LFK A;  1P2I I;  1F7Z I;  3BTW I;  3BTM I;  5JB5 A;  3TGI I;  1TFX C;  3L3T E;  5JB4 A;  3OFW A;  1AAL A;  1ZJD B;  3AUE A;  3P92 E;  4U30 W;  4Y11 I;  1BTI A;  3BTK I;  4Y0Y I;  4Y10 I;  1TOC R;  1BIK A;  1BZ5 A;  1FAN A;  1Y62 A;  3AUB A;  3U1J E;  8PTI A;  2DDJ A;  1TCP A;  2KCR A;  4WXV C; 
#chains in the Genus database with same CATH topology
 1TPA I;  1BTH P;  2CA7 A;  1KNT A;  1F5R I;  2JOT A;  3AUD A;  3AUC A;  4BNR I;  4NTW B;  1LD6 A;  4BQD A;  3M7Q B;  1DTK A;  1UUA A;  3LDJ A;  4WWY C;  3BYB A;  1BUN B;  2ZVX A;  4ISL B;  1CO7 I;  1P2K I;  2W8X A;  1AAP A;  3P95 E;  2FI3 I;  3LDM A;  1EJM B;  3BTE I;  3BTG I;  3WNY A;  3L33 E;  1BPT A;  9PTI A;  1TAW B;  1ZR0 B;  3AUH A;  1UUB A;  1OA5 5;  1IRH A;  1KUN A;  1NAG A;  1PIT A;  2FTM B;  1JC6 A;  1P2J I;  1T8M B;  3AUG A;  1DEM A;  3UOU B;  5JB7 A;  1BRC I;  2TPI I;  2M01 A;  3AUI A;  3BTQ I;  1BHC A;  1SHP A;  6PTI A;  2FI5 I;  3UIR C;  1QLQ A;  3TGJ I;  5JB6 A;  3D65 I;  4TPI I;  2IJO I;  2M99 A;  3CI7 A;  1TAP A;  1KIG I;  4NTX B;  1D0D A;  2ZJX A;  3FP7 J;  1CA0 D;  3FP6 I;  1DTX A;  3T62 D;  3BTT I;  4ISO B;  2FTL I;  3TGK I;  4U32 X;  1P2M B;  1YKT B;  2J6D A;  1T8L B;  3LDI A;  2TGP I;  2UUX A;  5C67 C;  2R9P E;  1FAK I;  3BTH I;  1CBW D;  1BPI A;  7PTI A;  1JV8 A;  1G6X A;  1KTH A;  4NTY B;  4Y0Z I;  3BTD I;  1EAW B;  1P2N B;  1D0D B;  1BRB I;  1JV9 A;  1YLD B;  1P2Q B;  1YC0 I;  1P2O B;  2RA3 C;  2ODY E;  4DG4 C;  2UUY B;  3OTJ I;  1K6U A;  1BF0 A;  1B0C A;  2PTC I;  1T8O B;  2KAI I;  3BTF I;  4PTI A;  1BZX I;  1OA6 5;  3GYM I;  4DTG K;  1T8N B;  1YLC B;  2DDI A;  1LD5 A;  1T7C B;  1FY8 I;  3FP8 I;  4ISN B;  2FI4 I;  1MTN D;  1ADZ A;  1DEN A;  2LFL A;  5PTI A;  3TPI I;  2HEX A;  4BD9 B;  2KNT A;  2LFK A;  1P2I I;  1F7Z I;  3BTW I;  3BTM I;  5JB5 A;  3TGI I;  1TFX C;  3L3T E;  5JB4 A;  3OFW A;  1AAL A;  1ZJD B;  3AUE A;  3P92 E;  4U30 W;  4Y11 I;  1BTI A;  3BTK I;  4Y0Y I;  4Y10 I;  1TOC R;  1BIK A;  1BZ5 A;  1FAN A;  1Y62 A;  3AUB A;  3U1J E;  8PTI A;  2DDJ A;  1TCP A;  2KCR A;  4WXV C; 
#chains in the Genus database with same CATH homology
 1TPA I;  1BTH P;  2CA7 A;  1KNT A;  1F5R I;  2JOT A;  3AUD A;  3AUC A;  4BNR I;  4NTW B;  1LD6 A;  4BQD A;  3M7Q B;  1DTK A;  1UUA A;  3LDJ A;  4WWY C;  3BYB A;  1BUN B;  2ZVX A;  4ISL B;  1CO7 I;  1P2K I;  2W8X A;  1AAP A;  3P95 E;  2FI3 I;  3LDM A;  1EJM B;  3BTE I;  3BTG I;  3WNY A;  3L33 E;  1BPT A;  9PTI A;  1TAW B;  1ZR0 B;  3AUH A;  1UUB A;  1OA5 5;  1IRH A;  1KUN A;  1NAG A;  1PIT A;  2FTM B;  1JC6 A;  1P2J I;  1T8M B;  3AUG A;  1DEM A;  3UOU B;  5JB7 A;  1BRC I;  2TPI I;  2M01 A;  3AUI A;  3BTQ I;  1BHC A;  1SHP A;  6PTI A;  2FI5 I;  3UIR C;  1QLQ A;  3TGJ I;  5JB6 A;  3D65 I;  4TPI I;  2IJO I;  2M99 A;  3CI7 A;  1TAP A;  1KIG I;  4NTX B;  1D0D A;  2ZJX A;  3FP7 J;  1CA0 D;  3FP6 I;  1DTX A;  3T62 D;  3BTT I;  4ISO B;  2FTL I;  3TGK I;  4U32 X;  1P2M B;  1YKT B;  2J6D A;  1T8L B;  3LDI A;  2TGP I;  2UUX A;  5C67 C;  2R9P E;  1FAK I;  3BTH I;  1CBW D;  1BPI A;  7PTI A;  1JV8 A;  1G6X A;  1KTH A;  4NTY B;  4Y0Z I;  3BTD I;  1EAW B;  1P2N B;  1D0D B;  1BRB I;  1JV9 A;  1YLD B;  1P2Q B;  1YC0 I;  1P2O B;  2RA3 C;  2ODY E;  4DG4 C;  2UUY B;  3OTJ I;  1K6U A;  1BF0 A;  1B0C A;  2PTC I;  1T8O B;  2KAI I;  3BTF I;  4PTI A;  1BZX I;  1OA6 5;  3GYM I;  4DTG K;  1T8N B;  1YLC B;  2DDI A;  1LD5 A;  1T7C B;  1FY8 I;  3FP8 I;  4ISN B;  2FI4 I;  1MTN D;  1ADZ A;  1DEN A;  2LFL A;  5PTI A;  3TPI I;  2HEX A;  4BD9 B;  2KNT A;  2LFK A;  1P2I I;  1F7Z I;  3BTW I;  3BTM I;  5JB5 A;  3TGI I;  1TFX C;  3L3T E;  5JB4 A;  3OFW A;  1AAL A;  1ZJD B;  3AUE A;  3P92 E;  4U30 W;  4Y11 I;  1BTI A;  3BTK I;  4Y0Y I;  4Y10 I;  1TOC R;  1BIK A;  1BZ5 A;  1FAN A;  1Y62 A;  3AUB A;  3U1J E;  8PTI A;  2DDJ A;  1TCP A;  2KCR A;  4WXV C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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