1YLDB

Trypsin/bpti complex mutant
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
56
structure length
52
Chain Sequence
RPDFLEPPYTGPCKARIIRYFYNAPDGLQTFVYGGCRAKRNNFKSAEDMRTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/inhibitor
molecule keywords Trypsin II
publication title Partially folded bovine pancreatic trypsin inhibitor analogues attain fully native structures when co-crystallized with S195A rat trypsin
pubmed doi rcsb
source organism Rattus norvegicus
total genus 6
structure length 52
sequence length 56
ec nomenclature
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00014 Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domain 1yldB00
1P2JI 3D65I 1BPTA 1UUBA 3LDJA 1AAPA 1EAWB 2KAII 1OA65 1T8NB 1BUNB 2DDJA 2R9PE 3AUGA 3BTMI 3FP7J 5PTIA 3L33E 2FI3I 4BQDA 1PITA 2CA7A 3LDMA 2FTLI 1YLDB 4Y0ZI 1BPIA 2HEXA 1BRBI 4NTYB 3OTJI 2UUXA 3BTWI 4ISNB 4WXVC 1MTND 2KNTA 1TAPA 1DTKA 2W8XA 1T8LB 4NTWB 2ZJXA 1D0DA 1T8MB 1P2KI 2LFLA 3TGII 1F7ZI 1OA55 1YC0I 1P2II 1BF0A 3AUDA 1TPAI 2RA3C 2FI5I 1FANA 1ADZA 3BTKI 1BTIA 4NTXB 4DG4C 1D0DB 1CA0D 1BZXI 3WNYA 4ISLB 4BD9B 2ODYE 1LD6A 4ISOB 4PTIA 2M01A 1DEMA 3P95E 3AUIA 5C67C 7PTIA 3AUHA 1NAGA 1TAWB 4Y10I 5JB7A 1P2NB 1Y62A 4DTGK 3L3TE 4TPII 2FTMB 1EJMB 3BTQI 1CO7I 1LD5A 1BTHP 3AUCA 3LDIA 2LFKA 3U1JE 1YLCB 9PTIA 3OFWA 2UUYB 1UUAA 3M7QB 5JB6A 8PTIA 2M99A 3FP6I 1TFXC 1KTHA 3TPII 1TCPA 1T8OB 1CBWD 3BTTI 1ZJDB 1P2QB 1FAKI 3CI7A 3P92E 5JB4A 1P2OB 2TGPI 1TOCR 2KCRA 3TGJI 2DDIA 2ZVXA 3BYBA 4U30W 3TGKI 1DTXA 1K6UA 1AALA 1B0CA 3BTEI 1YKTB 4WWYC 1JV8A 1BRCI 1JC6A 4BNRI 3AUEA 1KIGI 4U32X 6PTIA 1F5RI 3BTDI 1BZ5A 1BIKA 1QLQA 1T7CB 5JB5A 3GYMI 2J6DA 2JOTA 3BTGI 1KUNA 3AUBA 3BTHI 4Y11I 1ZR0B 3UOUB 1SHPA 3T62D 1FY8I 4Y0YI 3FP8I 1G6XA 3BTFI 1JV9A 2IJOI 1P2MB 2FI4I 3UIRC 1KNTA 1DENA 1IRHA 2PTCI 1BHCA 2TPII
chains in the Genus database with same CATH superfamily
1P2JI 3D65I 1BPTA 1UUBA 3LDJA 1AAPA 1EAWB 2KAII 1OA65 1T8NB 1BUNB 2DDJA 2R9PE 3AUGA 3BTMI 3FP7J 5PTIA 3L33E 2FI3I 4BQDA 1PITA 2CA7A 3LDMA 2FTLI 1YLDB 4Y0ZI 1BPIA 2HEXA 1BRBI 4NTYB 3OTJI 2UUXA 3BTWI 4ISNB 4WXVC 1MTND 2KNTA 1TAPA 1DTKA 2W8XA 1T8LB 4NTWB 2ZJXA 1D0DA 1T8MB 1P2KI 2LFLA 3TGII 1F7ZI 1OA55 1YC0I 1P2II 1BF0A 3AUDA 1TPAI 2RA3C 2FI5I 1FANA 1ADZA 3BTKI 1BTIA 4NTXB 4DG4C 1D0DB 1CA0D 1BZXI 3WNYA 4ISLB 4BD9B 2ODYE 1LD6A 4ISOB 4PTIA 2M01A 1DEMA 3P95E 3AUIA 5C67C 7PTIA 3AUHA 1NAGA 1TAWB 4Y10I 5JB7A 1P2NB 1Y62A 4DTGK 3L3TE 4TPII 2FTMB 1EJMB 3BTQI 1CO7I 1LD5A 1BTHP 3AUCA 3LDIA 2LFKA 3U1JE 1YLCB 9PTIA 3OFWA 2UUYB 1UUAA 3M7QB 5JB6A 8PTIA 2M99A 3FP6I 1TFXC 1KTHA 3TPII 1TCPA 1T8OB 1CBWD 3BTTI 1ZJDB 1P2QB 1FAKI 3CI7A 3P92E 5JB4A 1P2OB 2TGPI 1TOCR 2KCRA 3TGJI 2DDIA 2ZVXA 3BYBA 4U30W 3TGKI 1DTXA 1K6UA 1AALA 1B0CA 3BTEI 1YKTB 4WWYC 1JV8A 1BRCI 1JC6A 4BNRI 3AUEA 1KIGI 4U32X 6PTIA 1F5RI 3BTDI 1BZ5A 1BIKA 1QLQA 1T7CB 5JB5A 3GYMI 2J6DA 2JOTA 3BTGI 1KUNA 3AUBA 3BTHI 4Y11I 1ZR0B 3UOUB 1SHPA 3T62D 1FY8I 4Y0YI 3FP8I 1G6XA 3BTFI 1JV9A 2IJOI 1P2MB 2FI4I 3UIRC 1KNTA 1DENA 1IRHA 2PTCI 1BHCA 2TPII
chains in the Genus database with same CATH topology
1P2JI 3D65I 1BPTA 1UUBA 3LDJA 1AAPA 1EAWB 2KAII 1OA65 1T8NB 1BUNB 2DDJA 2R9PE 3AUGA 3BTMI 3FP7J 5PTIA 3L33E 2FI3I 4BQDA 1PITA 2CA7A 3LDMA 2FTLI 1YLDB 4Y0ZI 1BPIA 2HEXA 1BRBI 4NTYB 3OTJI 2UUXA 3BTWI 4ISNB 4WXVC 1MTND 2KNTA 1TAPA 1DTKA 2W8XA 1T8LB 4NTWB 2ZJXA 1D0DA 1T8MB 1P2KI 2LFLA 3TGII 1F7ZI 1OA55 1YC0I 1P2II 1BF0A 3AUDA 1TPAI 2RA3C 2FI5I 1FANA 1ADZA 3BTKI 1BTIA 4NTXB 4DG4C 1D0DB 1CA0D 1BZXI 3WNYA 4ISLB 4BD9B 2ODYE 1LD6A 4ISOB 4PTIA 2M01A 1DEMA 3P95E 3AUIA 5C67C 7PTIA 3AUHA 1NAGA 1TAWB 4Y10I 5JB7A 1P2NB 1Y62A 4DTGK 3L3TE 4TPII 2FTMB 1EJMB 3BTQI 1CO7I 1LD5A 1BTHP 3AUCA 3LDIA 2LFKA 3U1JE 1YLCB 9PTIA 3OFWA 2UUYB 1UUAA 3M7QB 5JB6A 8PTIA 2M99A 3FP6I 1TFXC 1KTHA 3TPII 1TCPA 1T8OB 1CBWD 3BTTI 1ZJDB 1P2QB 1FAKI 3CI7A 3P92E 5JB4A 1P2OB 2TGPI 1TOCR 2KCRA 3TGJI 2DDIA 2ZVXA 3BYBA 4U30W 3TGKI 1DTXA 1K6UA 1AALA 1B0CA 3BTEI 1YKTB 4WWYC 1JV8A 1BRCI 1JC6A 4BNRI 3AUEA 1KIGI 4U32X 6PTIA 1F5RI 3BTDI 1BZ5A 1BIKA 1QLQA 1T7CB 5JB5A 3GYMI 2J6DA 2JOTA 3BTGI 1KUNA 3AUBA 3BTHI 4Y11I 1ZR0B 3UOUB 1SHPA 3T62D 1FY8I 4Y0YI 3FP8I 1G6XA 3BTFI 1JV9A 2IJOI 1P2MB 2FI4I 3UIRC 1KNTA 1DENA 1IRHA 2PTCI 1BHCA 2TPII
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P2J I;  3D65 I;  1BPT A;  1UUB A;  3LDJ A;  1AAP A;  1EAW B;  2KAI I;  1OA6 5;  1T8N B;  1BUN B;  2DDJ A;  2R9P E;  3AUG A;  3BTM I;  3FP7 J;  5PTI A;  3L33 E;  2FI3 I;  4BQD A;  1PIT A;  2CA7 A;  3LDM A;  2FTL I;  1YLD B;  4Y0Z I;  1BPI A;  2HEX A;  1BRB I;  4NTY B;  3OTJ I;  2UUX A;  3BTW I;  4ISN B;  4WXV C;  1MTN D;  2KNT A;  1TAP A;  1DTK A;  2W8X A;  1T8L B;  4NTW B;  2ZJX A;  1D0D A;  1T8M B;  1P2K I;  2LFL A;  3TGI I;  1F7Z I;  1OA5 5;  1YC0 I;  1P2I I;  1BF0 A;  3AUD A;  1TPA I;  2RA3 C;  2FI5 I;  1FAN A;  1ADZ A;  3BTK I;  1BTI A;  4NTX B;  4DG4 C;  1D0D B;  1CA0 D;  1BZX I;  3WNY A;  4ISL B;  4BD9 B;  2ODY E;  1LD6 A;  4ISO B;  4PTI A;  2M01 A;  1DEM A;  3P95 E;  3AUI A;  5C67 C;  7PTI A;  3AUH A;  1NAG A;  1TAW B;  4Y10 I;  5JB7 A;  1P2N B;  1Y62 A;  4DTG K;  3L3T E;  4TPI I;  2FTM B;  1EJM B;  3BTQ I;  1CO7 I;  1LD5 A;  1BTH P;  3AUC A;  3LDI A;  2LFK A;  3U1J E;  1YLC B;  9PTI A;  3OFW A;  2UUY B;  1UUA A;  3M7Q B;  5JB6 A;  8PTI A;  2M99 A;  3FP6 I;  1TFX C;  1KTH A;  3TPI I;  1TCP A;  1T8O B;  1CBW D;  3BTT I;  1ZJD B;  1P2Q B;  1FAK I;  3CI7 A;  3P92 E;  5JB4 A;  1P2O B;  2TGP I;  1TOC R;  2KCR A;  3TGJ I;  2DDI A;  2ZVX A;  3BYB A;  4U30 W;  3TGK I;  1DTX A;  1K6U A;  1AAL A;  1B0C A;  3BTE I;  1YKT B;  4WWY C;  1JV8 A;  1BRC I;  1JC6 A;  4BNR I;  3AUE A;  1KIG I;  4U32 X;  6PTI A;  1F5R I;  3BTD I;  1BZ5 A;  1BIK A;  1QLQ A;  1T7C B;  5JB5 A;  3GYM I;  2J6D A;  2JOT A;  3BTG I;  1KUN A;  3AUB A;  3BTH I;  4Y11 I;  1ZR0 B;  3UOU B;  1SHP A;  3T62 D;  1FY8 I;  4Y0Y I;  3FP8 I;  1G6X A;  3BTF I;  1JV9 A;  2IJO I;  1P2M B;  2FI4 I;  3UIR C;  1KNT A;  1DEN A;  1IRH A;  2PTC I;  1BHC A;  2TPI I; 
#chains in the Genus database with same CATH topology
 1P2J I;  3D65 I;  1BPT A;  1UUB A;  3LDJ A;  1AAP A;  1EAW B;  2KAI I;  1OA6 5;  1T8N B;  1BUN B;  2DDJ A;  2R9P E;  3AUG A;  3BTM I;  3FP7 J;  5PTI A;  3L33 E;  2FI3 I;  4BQD A;  1PIT A;  2CA7 A;  3LDM A;  2FTL I;  1YLD B;  4Y0Z I;  1BPI A;  2HEX A;  1BRB I;  4NTY B;  3OTJ I;  2UUX A;  3BTW I;  4ISN B;  4WXV C;  1MTN D;  2KNT A;  1TAP A;  1DTK A;  2W8X A;  1T8L B;  4NTW B;  2ZJX A;  1D0D A;  1T8M B;  1P2K I;  2LFL A;  3TGI I;  1F7Z I;  1OA5 5;  1YC0 I;  1P2I I;  1BF0 A;  3AUD A;  1TPA I;  2RA3 C;  2FI5 I;  1FAN A;  1ADZ A;  3BTK I;  1BTI A;  4NTX B;  4DG4 C;  1D0D B;  1CA0 D;  1BZX I;  3WNY A;  4ISL B;  4BD9 B;  2ODY E;  1LD6 A;  4ISO B;  4PTI A;  2M01 A;  1DEM A;  3P95 E;  3AUI A;  5C67 C;  7PTI A;  3AUH A;  1NAG A;  1TAW B;  4Y10 I;  5JB7 A;  1P2N B;  1Y62 A;  4DTG K;  3L3T E;  4TPI I;  2FTM B;  1EJM B;  3BTQ I;  1CO7 I;  1LD5 A;  1BTH P;  3AUC A;  3LDI A;  2LFK A;  3U1J E;  1YLC B;  9PTI A;  3OFW A;  2UUY B;  1UUA A;  3M7Q B;  5JB6 A;  8PTI A;  2M99 A;  3FP6 I;  1TFX C;  1KTH A;  3TPI I;  1TCP A;  1T8O B;  1CBW D;  3BTT I;  1ZJD B;  1P2Q B;  1FAK I;  3CI7 A;  3P92 E;  5JB4 A;  1P2O B;  2TGP I;  1TOC R;  2KCR A;  3TGJ I;  2DDI A;  2ZVX A;  3BYB A;  4U30 W;  3TGK I;  1DTX A;  1K6U A;  1AAL A;  1B0C A;  3BTE I;  1YKT B;  4WWY C;  1JV8 A;  1BRC I;  1JC6 A;  4BNR I;  3AUE A;  1KIG I;  4U32 X;  6PTI A;  1F5R I;  3BTD I;  1BZ5 A;  1BIK A;  1QLQ A;  1T7C B;  5JB5 A;  3GYM I;  2J6D A;  2JOT A;  3BTG I;  1KUN A;  3AUB A;  3BTH I;  4Y11 I;  1ZR0 B;  3UOU B;  1SHP A;  3T62 D;  1FY8 I;  4Y0Y I;  3FP8 I;  1G6X A;  3BTF I;  1JV9 A;  2IJO I;  1P2M B;  2FI4 I;  3UIR C;  1KNT A;  1DEN A;  1IRH A;  2PTC I;  1BHC A;  2TPI I; 
#chains in the Genus database with same CATH homology
 1P2J I;  3D65 I;  1BPT A;  1UUB A;  3LDJ A;  1AAP A;  1EAW B;  2KAI I;  1OA6 5;  1T8N B;  1BUN B;  2DDJ A;  2R9P E;  3AUG A;  3BTM I;  3FP7 J;  5PTI A;  3L33 E;  2FI3 I;  4BQD A;  1PIT A;  2CA7 A;  3LDM A;  2FTL I;  1YLD B;  4Y0Z I;  1BPI A;  2HEX A;  1BRB I;  4NTY B;  3OTJ I;  2UUX A;  3BTW I;  4ISN B;  4WXV C;  1MTN D;  2KNT A;  1TAP A;  1DTK A;  2W8X A;  1T8L B;  4NTW B;  2ZJX A;  1D0D A;  1T8M B;  1P2K I;  2LFL A;  3TGI I;  1F7Z I;  1OA5 5;  1YC0 I;  1P2I I;  1BF0 A;  3AUD A;  1TPA I;  2RA3 C;  2FI5 I;  1FAN A;  1ADZ A;  3BTK I;  1BTI A;  4NTX B;  4DG4 C;  1D0D B;  1CA0 D;  1BZX I;  3WNY A;  4ISL B;  4BD9 B;  2ODY E;  1LD6 A;  4ISO B;  4PTI A;  2M01 A;  1DEM A;  3P95 E;  3AUI A;  5C67 C;  7PTI A;  3AUH A;  1NAG A;  1TAW B;  4Y10 I;  5JB7 A;  1P2N B;  1Y62 A;  4DTG K;  3L3T E;  4TPI I;  2FTM B;  1EJM B;  3BTQ I;  1CO7 I;  1LD5 A;  1BTH P;  3AUC A;  3LDI A;  2LFK A;  3U1J E;  1YLC B;  9PTI A;  3OFW A;  2UUY B;  1UUA A;  3M7Q B;  5JB6 A;  8PTI A;  2M99 A;  3FP6 I;  1TFX C;  1KTH A;  3TPI I;  1TCP A;  1T8O B;  1CBW D;  3BTT I;  1ZJD B;  1P2Q B;  1FAK I;  3CI7 A;  3P92 E;  5JB4 A;  1P2O B;  2TGP I;  1TOC R;  2KCR A;  3TGJ I;  2DDI A;  2ZVX A;  3BYB A;  4U30 W;  3TGK I;  1DTX A;  1K6U A;  1AAL A;  1B0C A;  3BTE I;  1YKT B;  4WWY C;  1JV8 A;  1BRC I;  1JC6 A;  4BNR I;  3AUE A;  1KIG I;  4U32 X;  6PTI A;  1F5R I;  3BTD I;  1BZ5 A;  1BIK A;  1QLQ A;  1T7C B;  5JB5 A;  3GYM I;  2J6D A;  2JOT A;  3BTG I;  1KUN A;  3AUB A;  3BTH I;  4Y11 I;  1ZR0 B;  3UOU B;  1SHP A;  3T62 D;  1FY8 I;  4Y0Y I;  3FP8 I;  1G6X A;  3BTF I;  1JV9 A;  2IJO I;  1P2M B;  2FI4 I;  3UIR C;  1KNT A;  1DEN A;  1IRH A;  2PTC I;  1BHC A;  2TPI I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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