1YM5A

Crystal structure of yhi9, the yeast member of the phenazine biosynthesis phzf enzyme superfamily.
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
294
structure length
294
Chain Sequence
TLMVPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFKPSDKKYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITINEGLISFKAPMADYESISSEMIADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region
publication title Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 83
structure length 294
sequence length 294
ec nomenclature
pdb deposition date 2005-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1ym5A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1ym5A01
1TM0A 1U1VA 2Q9HA 1U1XA 4J9XA 4JUUA 4Q2HA 4DUNA 1S7JA 1W62A 2OTNA 1YM5A 2GKJA 1XUAA 1BWZA 2Q9JA 4IJZA 3EKMA 5H2YA 1QY9A 1T6KA 1GQZA 2H9FA 4K7GB 2GKEA 4K7XA 1SDJA 1W61A 1QYAA 4J9WA 4JD7A 2AZPA 3EJXA 5IWEA 5H2GA 1XUBA 4IK0A 3G7KA 5HA4A 4JCIA 4Q60A 3EDNA 1U1WA 3FVEA 4LB0A 2PVZA 2PW0A 5M47A 4JBDA 4K8LA 1U0KA
chains in the Genus database with same CATH superfamily
1TM0A 2Q9HA 1WPPA 4DUNA 2OTNA 1XUAA 2Q9JA 1QY9A 1I74A 4K7GB 4LG3A 2QB7A 2QB6A 4JCIA 4PY9A 4OA3A 3FVEA 4LB0A 4K8LA 4RPAA 4JUUA 4Q2HA 2LT2A 1YM5A 2GKJA 3PVHA 1BWZA 2IW4A 4IJZA 3EKMA 1T6KA 1GQZA 4K7XA 2ZVFA 1W61A 3WQZA 5IWEA 2MPBA 5H2GA 1K23A 3ICJA 2KPTA 3G7KA 3EDNA 2PW0A 1S7JA 3IGHX 1W62A 2KW7A 3G98A 2YMAA 1K20A 2H9FA 2GKEA 4J9WA 2ENXA 4LS9A 2ZXOA 3PW9A 1XUBA 4Q60A 3PTJA 5ANPA 2EB0A 5M47A 4JBDA 3DEVA 3W5WA 1U1VA 4J9XA 1U1XA 2QB8A 2ZXPA 5H2YA 1WPMA 1SDJA 1QYAA 4JD7A 2AZPA 3EJXA 1IR6A 4IK0A 5HA4A 4GL6A 1U1WA 2PVZA 2HAWA 1U0KA 2ZXRA
chains in the Genus database with same CATH topology
1TM0A 2Q9HA 1WPPA 4DUNA 2OTNA 1XUAA 2Q9JA 1QY9A 1I74A 4K7GB 4LG3A 2QB7A 2QB6A 4JCIA 4PY9A 4OA3A 3FVEA 4LB0A 4K8LA 4RPAA 4JUUA 4Q2HA 2LT2A 1YM5A 2GKJA 3PVHA 1BWZA 2IW4A 4IJZA 3EKMA 1T6KA 1GQZA 4K7XA 2ZVFA 1W61A 3WQZA 5IWEA 2MPBA 5H2GA 1K23A 3ICJA 2KPTA 3G7KA 3EDNA 2PW0A 1S7JA 3IGHX 1W62A 2KW7A 3G98A 2YMAA 1K20A 2H9FA 2GKEA 4J9WA 2ENXA 4LS9A 2ZXOA 3PW9A 1XUBA 4Q60A 3PTJA 5ANPA 2EB0A 5M47A 4JBDA 3DEVA 3W5WA 1U1VA 4J9XA 1U1XA 2QB8A 2ZXPA 5H2YA 1WPMA 1SDJA 1QYAA 4JD7A 2AZPA 3EJXA 1IR6A 4IK0A 5HA4A 4GL6A 1U1WA 2PVZA 2HAWA 1U0KA 2ZXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TM0 A;  1U1V A;  2Q9H A;  1U1X A;  4J9X A;  4JUU A;  4Q2H A;  4DUN A;  1S7J A;  1W62 A;  2OTN A;  1YM5 A;  2GKJ A;  1XUA A;  1BWZ A;  2Q9J A;  4IJZ A;  3EKM A;  5H2Y A;  1QY9 A;  1T6K A;  1GQZ A;  2H9F A;  4K7G B;  2GKE A;  4K7X A;  1SDJ A;  1W61 A;  1QYA A;  4J9W A;  4JD7 A;  2AZP A;  3EJX A;  5IWE A;  5H2G A;  1XUB A;  4IK0 A;  3G7K A;  5HA4 A;  4JCI A;  4Q60 A;  3EDN A;  1U1W A;  3FVE A;  4LB0 A;  2PVZ A;  2PW0 A;  5M47 A;  4JBD A;  4K8L A;  1U0K A; 
#chains in the Genus database with same CATH topology
 1TM0 A;  2Q9H A;  1WPP A;  4DUN A;  2OTN A;  1XUA A;  2Q9J A;  1QY9 A;  1I74 A;  4K7G B;  4LG3 A;  2QB7 A;  2QB6 A;  4JCI A;  4PY9 A;  4OA3 A;  3FVE A;  4LB0 A;  4K8L A;  4RPA A;  4JUU A;  4Q2H A;  2LT2 A;  1YM5 A;  2GKJ A;  3PVH A;  1BWZ A;  2IW4 A;  4IJZ A;  3EKM A;  1T6K A;  1GQZ A;  4K7X A;  2ZVF A;  1W61 A;  3WQZ A;  5IWE A;  2MPB A;  5H2G A;  1K23 A;  3ICJ A;  2KPT A;  3G7K A;  3EDN A;  2PW0 A;  1S7J A;  3IGH X;  1W62 A;  2KW7 A;  3G98 A;  2YMA A;  1K20 A;  2H9F A;  2GKE A;  4J9W A;  2ENX A;  4LS9 A;  2ZXO A;  3PW9 A;  1XUB A;  4Q60 A;  3PTJ A;  5ANP A;  2EB0 A;  5M47 A;  4JBD A;  3DEV A;  3W5W A;  1U1V A;  4J9X A;  1U1X A;  2QB8 A;  2ZXP A;  5H2Y A;  1WPM A;  1SDJ A;  1QYA A;  4JD7 A;  2AZP A;  3EJX A;  1IR6 A;  4IK0 A;  5HA4 A;  4GL6 A;  1U1W A;  2PVZ A;  2HAW A;  1U0K A;  2ZXR A; 
#chains in the Genus database with same CATH homology
 1TM0 A;  2Q9H A;  1WPP A;  4DUN A;  2OTN A;  1XUA A;  2Q9J A;  1QY9 A;  1I74 A;  4K7G B;  4LG3 A;  2QB7 A;  2QB6 A;  4JCI A;  4PY9 A;  4OA3 A;  3FVE A;  4LB0 A;  4K8L A;  4RPA A;  4JUU A;  4Q2H A;  2LT2 A;  1YM5 A;  2GKJ A;  3PVH A;  1BWZ A;  2IW4 A;  4IJZ A;  3EKM A;  1T6K A;  1GQZ A;  4K7X A;  2ZVF A;  1W61 A;  3WQZ A;  5IWE A;  2MPB A;  5H2G A;  1K23 A;  3ICJ A;  2KPT A;  3G7K A;  3EDN A;  2PW0 A;  1S7J A;  3IGH X;  1W62 A;  2KW7 A;  3G98 A;  2YMA A;  1K20 A;  2H9F A;  2GKE A;  4J9W A;  2ENX A;  4LS9 A;  2ZXO A;  3PW9 A;  1XUB A;  4Q60 A;  3PTJ A;  5ANP A;  2EB0 A;  5M47 A;  4JBD A;  3DEV A;  3W5W A;  1U1V A;  4J9X A;  1U1X A;  2QB8 A;  2ZXP A;  5H2Y A;  1WPM A;  1SDJ A;  1QYA A;  4JD7 A;  2AZP A;  3EJX A;  1IR6 A;  4IK0 A;  5HA4 A;  4GL6 A;  1U1W A;  2PVZ A;  2HAW A;  1U0K A;  2ZXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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