1YMKA

Crystal structure of the cdc25b phosphatase catalytic domain in the apo form
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
175
structure length
171
Chain Sequence
MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRSW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase, cell cycle
molecule keywords M-phase inducer phosphatase 2
publication title Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond
pubmed doi rcsb
source organism Homo sapiens
total genus 61
structure length 171
sequence length 175
ec nomenclature ec 3.1.3.48: Protein-tyrosine-phosphatase.
pdb deposition date 2005-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 1ymkA00
3I3UA 1YMLA 2WLRA 3OLHA 1YMDA 2VSWA 1WHBA 2KL3A 1YM9A 1HZMA 4WH9A 3IPOA 3F4AA 5HBOA 1YMKA 2J6PA 3I2VA 3D1PA 1CWTA 3NHVA 1WV9A 3GK5A 3OP3A 3NTAA 1GMXA 3TG1B 3K9RA 1CWSA 1DP2A 5LAMA 2IFDA 3P3AA 3FNJA 1CWRA 3FLHA 3IWHA 2MOLA 2A2KA 1YT8A 3AAXA 1BOHA 2HHGA 3NTDA 2FSXA 1H4MX 3ICRA 2UZQA 3ICSA 4WH7A 5HBLA 3UTNX 1E0CA 3HIXA 3R2UA 1UARA 2JTSA 3MZZA 1ORBA 4JGTA 3HWIA 1RHDA 1YS0A 1QXNA 3AAYA 5HBPA 2EG3A 5LAOA 4F67A 1OKGA 1GN0A 5HBQA 2MRMA 3TP9A 2K0ZA 1TQ1A 2MOIA 2JTQA 3FS5A 2IFVA 2EG4B 1QB0A 1C25A 2DCQA 1URHA 1VEEA 1T3KA 2GWFA 1RHSA 3G5JA 1H4KX 3NT6A 3HZUA 3ILMA 5HPAA 2ORAA 1BOIA 2WLXA 3O3WA 3TG3A 4OCGA 3FOJA 2JTRA 3ICTA 3IPPA 2EG4A 2OUCA
chains in the Genus database with same CATH superfamily
3I3UA 1YMLA 2WLRA 3OLHA 1YMDA 2VSWA 1WHBA 2KL3A 1YM9A 1HZMA 4WH9A 3IPOA 3F4AA 5HBOA 1YMKA 2J6PA 3I2VA 3D1PA 1CWTA 3NHVA 1WV9A 3GK5A 3OP3A 3NTAA 1GMXA 3TG1B 3K9RA 1CWSA 1DP2A 5LAMA 2IFDA 3P3AA 3FNJA 1CWRA 3FLHA 3IWHA 2MOLA 2A2KA 1YT8A 3AAXA 1BOHA 2HHGA 3NTDA 2FSXA 1H4MX 3ICRA 2UZQA 3ICSA 4WH7A 5HBLA 3UTNX 1E0CA 3HIXA 3R2UA 1UARA 2JTSA 3MZZA 1ORBA 4JGTA 3HWIA 1RHDA 1YS0A 1QXNA 3AAYA 5HBPA 2EG3A 5LAOA 4F67A 1OKGA 1GN0A 5HBQA 2MRMA 3TP9A 2K0ZA 1TQ1A 2MOIA 2JTQA 3FS5A 2IFVA 2EG4B 1QB0A 1C25A 2DCQA 1URHA 1VEEA 1T3KA 2GWFA 1RHSA 2Q82A 3G5JA 1H4KX 3NT6A 3HZUA 3ILMA 5HPAA 2ORAA 1BOIA 2WLXA 3O3WA 3TG3A 4OCGA 3FOJA 2JTRA 3ICTA 3IPPA 2EG4A 2OUCA
chains in the Genus database with same CATH topology
3I3UA 1YMLA 2WLRA 3OLHA 1YMDA 2VSWA 1WHBA 2KL3A 1YM9A 1HZMA 4WH9A 3IPOA 3F4AA 5HBOA 1YMKA 2J6PA 3I2VA 3D1PA 1CWTA 3NHVA 1WV9A 3GK5A 3OP3A 3NTAA 1GMXA 3TG1B 3K9RA 1CWSA 1DP2A 5LAMA 2IFDA 3P3AA 3FNJA 1CWRA 3FLHA 3IWHA 2MOLA 2A2KA 1YT8A 3AAXA 1BOHA 2HHGA 3NTDA 2FSXA 1H4MX 3ICRA 2UZQA 3ICSA 4WH7A 5HBLA 3UTNX 1E0CA 3HIXA 3R2UA 1UARA 2JTSA 3MZZA 1ORBA 4JGTA 3HWIA 1RHDA 1YS0A 1QXNA 3AAYA 5HBPA 2EG3A 5LAOA 4F67A 1OKGA 1GN0A 5HBQA 2MRMA 3TP9A 2K0ZA 1TQ1A 2MOIA 2JTQA 3FS5A 2IFVA 2EG4B 1QB0A 1C25A 2DCQA 1URHA 1VEEA 1T3KA 2GWFA 1RHSA 3G5JA 1H4KX 3NT6A 3HZUA 3ILMA 5HPAA 2ORAA 1BOIA 2WLXA 3O3WA 3TG3A 4OCGA 3FOJA 2JTRA 3ICTA 3IPPA 2EG4A 2OUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I3U A;  1YML A;  2WLR A;  3OLH A;  1YMD A;  2VSW A;  1WHB A;  2KL3 A;  1YM9 A;  1HZM A;  4WH9 A;  3IPO A;  3F4A A;  5HBO A;  1YMK A;  2J6P A;  3I2V A;  3D1P A;  1CWT A;  3NHV A;  1WV9 A;  3GK5 A;  3OP3 A;  3NTA A;  1GMX A;  3TG1 B;  3K9R A;  1CWS A;  1DP2 A;  5LAM A;  2IFD A;  3P3A A;  3FNJ A;  1CWR A;  3FLH A;  3IWH A;  2MOL A;  2A2K A;  1YT8 A;  3AAX A;  1BOH A;  2HHG A;  3NTD A;  2FSX A;  1H4M X;  3ICR A;  2UZQ A;  3ICS A;  4WH7 A;  5HBL A;  3UTN X;  1E0C A;  3HIX A;  3R2U A;  1UAR A;  2JTS A;  3MZZ A;  1ORB A;  4JGT A;  3HWI A;  1RHD A;  1YS0 A;  1QXN A;  3AAY A;  5HBP A;  2EG3 A;  5LAO A;  4F67 A;  1OKG A;  1GN0 A;  5HBQ A;  2MRM A;  3TP9 A;  2K0Z A;  1TQ1 A;  2MOI A;  2JTQ A;  3FS5 A;  2IFV A;  2EG4 B;  1QB0 A;  1C25 A;  2DCQ A;  1URH A;  1VEE A;  1T3K A;  2GWF A;  1RHS A;  3G5J A;  1H4K X;  3NT6 A;  3HZU A;  3ILM A;  5HPA A;  2ORA A;  1BOI A;  2WLX A;  3O3W A;  3TG3 A;  4OCG A;  3FOJ A;  2JTR A;  3ICT A;  3IPP A;  2EG4 A;  2OUC A; 
#chains in the Genus database with same CATH topology
 3I3U A;  1YML A;  2WLR A;  3OLH A;  1YMD A;  2VSW A;  1WHB A;  2KL3 A;  1YM9 A;  1HZM A;  4WH9 A;  3IPO A;  3F4A A;  5HBO A;  1YMK A;  2J6P A;  3I2V A;  3D1P A;  1CWT A;  3NHV A;  1WV9 A;  3GK5 A;  3OP3 A;  3NTA A;  1GMX A;  3TG1 B;  3K9R A;  1CWS A;  1DP2 A;  5LAM A;  2IFD A;  3P3A A;  3FNJ A;  1CWR A;  3FLH A;  3IWH A;  2MOL A;  2A2K A;  1YT8 A;  3AAX A;  1BOH A;  2HHG A;  3NTD A;  2FSX A;  1H4M X;  3ICR A;  2UZQ A;  3ICS A;  4WH7 A;  5HBL A;  3UTN X;  1E0C A;  3HIX A;  3R2U A;  1UAR A;  2JTS A;  3MZZ A;  1ORB A;  4JGT A;  3HWI A;  1RHD A;  1YS0 A;  1QXN A;  3AAY A;  5HBP A;  2EG3 A;  5LAO A;  4F67 A;  1OKG A;  1GN0 A;  5HBQ A;  2MRM A;  3TP9 A;  2K0Z A;  1TQ1 A;  2MOI A;  2JTQ A;  3FS5 A;  2IFV A;  2EG4 B;  1QB0 A;  1C25 A;  2DCQ A;  1URH A;  1VEE A;  1T3K A;  2GWF A;  1RHS A;  2Q82 A;  3G5J A;  1H4K X;  3NT6 A;  3HZU A;  3ILM A;  5HPA A;  2ORA A;  1BOI A;  2WLX A;  3O3W A;  3TG3 A;  4OCG A;  3FOJ A;  2JTR A;  3ICT A;  3IPP A;  2EG4 A;  2OUC A; 
#chains in the Genus database with same CATH homology
 3I3U A;  1YML A;  2WLR A;  3OLH A;  1YMD A;  2VSW A;  1WHB A;  2KL3 A;  1YM9 A;  1HZM A;  4WH9 A;  3IPO A;  3F4A A;  5HBO A;  1YMK A;  2J6P A;  3I2V A;  3D1P A;  1CWT A;  3NHV A;  1WV9 A;  3GK5 A;  3OP3 A;  3NTA A;  1GMX A;  3TG1 B;  3K9R A;  1CWS A;  1DP2 A;  5LAM A;  2IFD A;  3P3A A;  3FNJ A;  1CWR A;  3FLH A;  3IWH A;  2MOL A;  2A2K A;  1YT8 A;  3AAX A;  1BOH A;  2HHG A;  3NTD A;  2FSX A;  1H4M X;  3ICR A;  2UZQ A;  3ICS A;  4WH7 A;  5HBL A;  3UTN X;  1E0C A;  3HIX A;  3R2U A;  1UAR A;  2JTS A;  3MZZ A;  1ORB A;  4JGT A;  3HWI A;  1RHD A;  1YS0 A;  1QXN A;  3AAY A;  5HBP A;  2EG3 A;  5LAO A;  4F67 A;  1OKG A;  1GN0 A;  5HBQ A;  2MRM A;  3TP9 A;  2K0Z A;  1TQ1 A;  2MOI A;  2JTQ A;  3FS5 A;  2IFV A;  2EG4 B;  1QB0 A;  1C25 A;  2DCQ A;  1URH A;  1VEE A;  1T3K A;  2GWF A;  1RHS A;  3G5J A;  1H4K X;  3NT6 A;  3HZU A;  3ILM A;  5HPA A;  2ORA A;  1BOI A;  2WLX A;  3O3W A;  3TG3 A;  4OCG A;  3FOJ A;  2JTR A;  3ICT A;  3IPP A;  2EG4 A;  2OUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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