1YMLA

Crystal structure of the cdc25b phosphatase catalytic domain with the active site cysteine in the sulfenic form
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
175
structure length
170
Chain Sequence
MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPKRVILIFHEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRSW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase, cell cycle
molecule keywords M-phase inducer phosphatase 2
publication title Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond
pubmed doi rcsb
source organism Homo sapiens
total genus 62
structure length 170
sequence length 175
ec nomenclature ec 3.1.3.48: Protein-tyrosine-phosphatase.
pdb deposition date 2005-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 1ymlA00
3IWHA 1WV9A 1H4KX 2EG4A 3ILMA 2JTRA 3AAXA 1YMKA 3IPPA 3NTDA 3MZZA 3HIXA 3I3UA 2OUCA 3OLHA 1DP2A 3HWIA 2IFDA 5HBLA 1CWSA 3P3AA 3NT6A 1YMLA 3I2VA 2K0ZA 1C25A 1GN0A 1RHDA 5HBPA 3ICRA 2FSXA 3TG1B 4F67A 1H4MX 1OKGA 3R2UA 1VEEA 1QXNA 1BOHA 3D1PA 2JTQA 2HHGA 3K9RA 3NHVA 3NTAA 4JGTA 2JTSA 1UARA 1HZMA 5LAOA 2VSWA 1YT8A 3TP9A 3ICSA 3FOJA 2WLXA 3FLHA 3TG3A 2ORAA 3HZUA 5HPAA 2EG3A 2WLRA 5HBQA 3IPOA 2J6PA 1GMXA 3O3WA 5LAMA 2DCQA 3G5JA 1CWRA 1CWTA 2KL3A 3F4AA 3FNJA 1ORBA 4WH7A 2UZQA 1E0CA 2EG4B 2IFVA 2MOIA 1YM9A 2GWFA 3OP3A 1YMDA 1BOIA 4WH9A 2MOLA 1RHSA 4OCGA 1URHA 3UTNX 1TQ1A 3GK5A 1T3KA 3ICTA 1YS0A 3AAYA 5HBOA 1QB0A 2A2KA 1WHBA 2MRMA 3FS5A
chains in the Genus database with same CATH superfamily
3IWHA 1WV9A 1H4KX 2EG4A 3ILMA 2JTRA 3AAXA 1YMKA 3IPPA 3NTDA 3MZZA 3HIXA 3I3UA 2OUCA 3OLHA 1DP2A 3HWIA 2IFDA 5HBLA 1CWSA 3P3AA 3NT6A 1YMLA 3I2VA 2K0ZA 1C25A 1GN0A 1RHDA 5HBPA 3ICRA 2FSXA 3TG1B 4F67A 1H4MX 1OKGA 3R2UA 1VEEA 1QXNA 1BOHA 3D1PA 2JTQA 2HHGA 3K9RA 3NHVA 3NTAA 4JGTA 2JTSA 1UARA 1HZMA 5LAOA 2VSWA 1YT8A 3TP9A 3ICSA 3FOJA 2WLXA 3FLHA 2Q82A 3TG3A 2ORAA 3HZUA 5HPAA 2EG3A 2WLRA 5HBQA 3IPOA 2J6PA 1GMXA 3O3WA 5LAMA 2DCQA 3G5JA 1CWRA 1CWTA 2KL3A 3F4AA 3FNJA 1ORBA 4WH7A 2UZQA 1E0CA 2EG4B 2IFVA 2MOIA 1YM9A 2GWFA 3OP3A 1YMDA 1BOIA 4WH9A 2MOLA 1RHSA 4OCGA 1URHA 3UTNX 1TQ1A 3GK5A 1T3KA 3ICTA 1YS0A 3AAYA 5HBOA 1QB0A 2A2KA 1WHBA 2MRMA 3FS5A
chains in the Genus database with same CATH topology
3IWHA 1WV9A 1H4KX 2EG4A 3ILMA 2JTRA 3AAXA 1YMKA 3IPPA 3NTDA 3MZZA 3HIXA 3I3UA 2OUCA 3OLHA 1DP2A 3HWIA 2IFDA 5HBLA 1CWSA 3P3AA 3NT6A 1YMLA 3I2VA 2K0ZA 1C25A 1GN0A 1RHDA 5HBPA 3ICRA 2FSXA 3TG1B 4F67A 1H4MX 1OKGA 3R2UA 1VEEA 1QXNA 1BOHA 3D1PA 2JTQA 2HHGA 3K9RA 3NHVA 3NTAA 4JGTA 2JTSA 1UARA 1HZMA 5LAOA 2VSWA 1YT8A 3TP9A 3ICSA 3FOJA 2WLXA 3FLHA 3TG3A 2ORAA 3HZUA 5HPAA 2EG3A 2WLRA 5HBQA 3IPOA 2J6PA 1GMXA 3O3WA 5LAMA 2DCQA 3G5JA 1CWRA 1CWTA 2KL3A 3F4AA 3FNJA 1ORBA 4WH7A 2UZQA 1E0CA 2EG4B 2IFVA 2MOIA 1YM9A 2GWFA 3OP3A 1YMDA 1BOIA 4WH9A 2MOLA 1RHSA 4OCGA 1URHA 3UTNX 1TQ1A 3GK5A 1T3KA 3ICTA 1YS0A 3AAYA 5HBOA 1QB0A 2A2KA 1WHBA 2MRMA 3FS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IWH A;  1WV9 A;  1H4K X;  2EG4 A;  3ILM A;  2JTR A;  3AAX A;  1YMK A;  3IPP A;  3NTD A;  3MZZ A;  3HIX A;  3I3U A;  2OUC A;  3OLH A;  1DP2 A;  3HWI A;  2IFD A;  5HBL A;  1CWS A;  3P3A A;  3NT6 A;  1YML A;  3I2V A;  2K0Z A;  1C25 A;  1GN0 A;  1RHD A;  5HBP A;  3ICR A;  2FSX A;  3TG1 B;  4F67 A;  1H4M X;  1OKG A;  3R2U A;  1VEE A;  1QXN A;  1BOH A;  3D1P A;  2JTQ A;  2HHG A;  3K9R A;  3NHV A;  3NTA A;  4JGT A;  2JTS A;  1UAR A;  1HZM A;  5LAO A;  2VSW A;  1YT8 A;  3TP9 A;  3ICS A;  3FOJ A;  2WLX A;  3FLH A;  3TG3 A;  2ORA A;  3HZU A;  5HPA A;  2EG3 A;  2WLR A;  5HBQ A;  3IPO A;  2J6P A;  1GMX A;  3O3W A;  5LAM A;  2DCQ A;  3G5J A;  1CWR A;  1CWT A;  2KL3 A;  3F4A A;  3FNJ A;  1ORB A;  4WH7 A;  2UZQ A;  1E0C A;  2EG4 B;  2IFV A;  2MOI A;  1YM9 A;  2GWF A;  3OP3 A;  1YMD A;  1BOI A;  4WH9 A;  2MOL A;  1RHS A;  4OCG A;  1URH A;  3UTN X;  1TQ1 A;  3GK5 A;  1T3K A;  3ICT A;  1YS0 A;  3AAY A;  5HBO A;  1QB0 A;  2A2K A;  1WHB A;  2MRM A;  3FS5 A; 
#chains in the Genus database with same CATH topology
 3IWH A;  1WV9 A;  1H4K X;  2EG4 A;  3ILM A;  2JTR A;  3AAX A;  1YMK A;  3IPP A;  3NTD A;  3MZZ A;  3HIX A;  3I3U A;  2OUC A;  3OLH A;  1DP2 A;  3HWI A;  2IFD A;  5HBL A;  1CWS A;  3P3A A;  3NT6 A;  1YML A;  3I2V A;  2K0Z A;  1C25 A;  1GN0 A;  1RHD A;  5HBP A;  3ICR A;  2FSX A;  3TG1 B;  4F67 A;  1H4M X;  1OKG A;  3R2U A;  1VEE A;  1QXN A;  1BOH A;  3D1P A;  2JTQ A;  2HHG A;  3K9R A;  3NHV A;  3NTA A;  4JGT A;  2JTS A;  1UAR A;  1HZM A;  5LAO A;  2VSW A;  1YT8 A;  3TP9 A;  3ICS A;  3FOJ A;  2WLX A;  3FLH A;  2Q82 A;  3TG3 A;  2ORA A;  3HZU A;  5HPA A;  2EG3 A;  2WLR A;  5HBQ A;  3IPO A;  2J6P A;  1GMX A;  3O3W A;  5LAM A;  2DCQ A;  3G5J A;  1CWR A;  1CWT A;  2KL3 A;  3F4A A;  3FNJ A;  1ORB A;  4WH7 A;  2UZQ A;  1E0C A;  2EG4 B;  2IFV A;  2MOI A;  1YM9 A;  2GWF A;  3OP3 A;  1YMD A;  1BOI A;  4WH9 A;  2MOL A;  1RHS A;  4OCG A;  1URH A;  3UTN X;  1TQ1 A;  3GK5 A;  1T3K A;  3ICT A;  1YS0 A;  3AAY A;  5HBO A;  1QB0 A;  2A2K A;  1WHB A;  2MRM A;  3FS5 A; 
#chains in the Genus database with same CATH homology
 3IWH A;  1WV9 A;  1H4K X;  2EG4 A;  3ILM A;  2JTR A;  3AAX A;  1YMK A;  3IPP A;  3NTD A;  3MZZ A;  3HIX A;  3I3U A;  2OUC A;  3OLH A;  1DP2 A;  3HWI A;  2IFD A;  5HBL A;  1CWS A;  3P3A A;  3NT6 A;  1YML A;  3I2V A;  2K0Z A;  1C25 A;  1GN0 A;  1RHD A;  5HBP A;  3ICR A;  2FSX A;  3TG1 B;  4F67 A;  1H4M X;  1OKG A;  3R2U A;  1VEE A;  1QXN A;  1BOH A;  3D1P A;  2JTQ A;  2HHG A;  3K9R A;  3NHV A;  3NTA A;  4JGT A;  2JTS A;  1UAR A;  1HZM A;  5LAO A;  2VSW A;  1YT8 A;  3TP9 A;  3ICS A;  3FOJ A;  2WLX A;  3FLH A;  3TG3 A;  2ORA A;  3HZU A;  5HPA A;  2EG3 A;  2WLR A;  5HBQ A;  3IPO A;  2J6P A;  1GMX A;  3O3W A;  5LAM A;  2DCQ A;  3G5J A;  1CWR A;  1CWT A;  2KL3 A;  3F4A A;  3FNJ A;  1ORB A;  4WH7 A;  2UZQ A;  1E0C A;  2EG4 B;  2IFV A;  2MOI A;  1YM9 A;  2GWF A;  3OP3 A;  1YMD A;  1BOI A;  4WH9 A;  2MOL A;  1RHS A;  4OCG A;  1URH A;  3UTN X;  1TQ1 A;  3GK5 A;  1T3K A;  3ICT A;  1YS0 A;  3AAY A;  5HBO A;  1QB0 A;  2A2K A;  1WHB A;  2MRM A;  3FS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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