1YNBA

Crystal structure of genomics apc5600
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
167
structure length
167
Chain Sequence
MDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHKIARRYVSCDEEGAREEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEIYRVLMERKNPVWWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords hypothetical protein AF1432
publication title Crystal structure of genomics AF1432 by Sulfur SAD methods
rcsb
source organism Archaeoglobus fulgidus
total genus 62
structure length 167
sequence length 167
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 1ynbA00
3NR1A 2GZ4A 4TNZA 4TO6A 4QFXA 4L1JB 5TKAA 1U6ZA 3TM8A 3P3QA 1XX7A 3TMCA 4RXSA 4QFYA 1VJ7A 2HEKA 3KH1A 4L7WA 4RXQA 4QG0A 4TNXA 3IRHA 3CCGA 4TO3A 3TMBA 4QFZA 3TMDA 4L7EA 4QG4A 4ZWEA 1YOYA 5TK8A 3BG2A 2FLOA 4BZCA 4N6WA 4RXPA 4TO5A 2PGSA 5TK6A 4TNRA 3LJXA 4TO0A 4QG1A 5AO0A 3HC1A 3MEMA 4MZ7A 4MCWA 2Q14A 4MDZA 4TO1A 3M1TA 4TO4A 4TNQA 4MLMA 4X9EA 2PARA 2CQZA 2PQ7A 5AO1A 1YNBA 3MZOA 4XDSA 2PAUA 4RXOA 4N71A 4TO2A 3NQWA 3I7AA 3U1NA 5AO4A 2PAQA 4MLNA 3RF0A 4BZBA 5AO2A 2DQBA 4DMBA 2O08A 4R8ZA 4Q7HA 5AO3A 2OGIA 1VQRA 5TK7A 4TNYA 4ZWGA 2O6IA 5TK9A 4L1JA 4QG2A 4ME4A 4RXRA 4LRLA 3HI0A 4TNPA
chains in the Genus database with same CATH superfamily
3NR1A 2GZ4A 4TNZA 4QQYA 4QQWA 4TO6A 4QFXA 4L1JB 3KQ5A 5TKAA 1U6ZA 3TM8A 3P3QA 1XX7A 3TMCA 4RXSA 4QFYA 1VJ7A 2HEKA 3KH1A 4L7WA 4RXQA 4QG0A 4TNXA 3IRHA 3CCGA 4TO3A 3TMBA 4QFZA 3TMDA 4Q2CA 4L7EA 4QG4A 4ZWEA 1YOYA 5TK8A 3BG2A 2FLOA 4BZCA 4N6WA 4QQXA 4RXPA 4TO5A 2PGSA 5TK6A 4TNRA 3LJXA 4TO0A 4QG1A 5AO0A 3SKDA 3HC1A 3MEMA 4MZ7A 4MCWA 2Q14A 4MDZA 4Q2DA 4TO1A 3M1TA 4TO4A 4TNQA 4MLMA 4X9EA 2PARA 2CQZA 2PQ7A 5AO1A 1YNBA 3MZOA 4XDSA 2PAUA 4RXOA 4N71A 4TO2A 3NQWA 3I7AA 3U1NA 5AO4A 2PAQA 4MLNA 3GW7A 3RF0A 4BZBA 5AO2A 2DQBA 3SK9A 4DMBA 2O08A 4R8ZA 4Q7HA 5AO3A 2OGIA 1VQRA 5TK7A 4TNYA 4QQZA 4ZWGA 2O6IA 5TK9A 4L1JA 4QG2A 4ME4A 4RXRA 3S4LA 4LRLA 3HI0A 4TNPA
chains in the Genus database with same CATH topology
3NR1A 2GZ4A 4TNZA 4QQYA 4QQWA 4TO6A 4QFXA 4L1JB 3KQ5A 5TKAA 1U6ZA 3TM8A 3P3QA 1XX7A 3TMCA 4RXSA 4QFYA 1VJ7A 2HEKA 3KH1A 4L7WA 4RXQA 4QG0A 4TNXA 3IRHA 3CCGA 4TO3A 3TMBA 4QFZA 3TMDA 4Q2CA 4L7EA 4QG4A 4ZWEA 1YOYA 5TK8A 3BG2A 2FLOA 4BZCA 4N6WA 4QQXA 4RXPA 4TO5A 2PGSA 5TK6A 4TNRA 3LJXA 4TO0A 4QG1A 5AO0A 3SKDA 3HC1A 3MEMA 4MZ7A 4MCWA 2Q14A 4MDZA 4Q2DA 4TO1A 3M1TA 4TO4A 4TNQA 4MLMA 4X9EA 2PARA 2CQZA 2PQ7A 5AO1A 1YNBA 3MZOA 4XDSA 2PAUA 4RXOA 4N71A 4TO2A 3NQWA 3I7AA 3U1NA 5AO4A 2PAQA 4MLNA 3GW7A 3RF0A 4BZBA 5AO2A 2DQBA 3SK9A 4DMBA 2O08A 4R8ZA 4Q7HA 5AO3A 2OGIA 1VQRA 5TK7A 4TNYA 4QQZA 4ZWGA 2O6IA 5TK9A 4L1JA 4QG2A 4ME4A 4RXRA 3S4LA 4LRLA 3HI0A 4TNPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NR1 A;  2GZ4 A;  4TNZ A;  4TO6 A;  4QFX A;  4L1J B;  5TKA A;  1U6Z A;  3TM8 A;  3P3Q A;  1XX7 A;  3TMC A;  4RXS A;  4QFY A;  1VJ7 A;  2HEK A;  3KH1 A;  4L7W A;  4RXQ A;  4QG0 A;  4TNX A;  3IRH A;  3CCG A;  4TO3 A;  3TMB A;  4QFZ A;  3TMD A;  4L7E A;  4QG4 A;  4ZWE A;  1YOY A;  5TK8 A;  3BG2 A;  2FLO A;  4BZC A;  4N6W A;  4RXP A;  4TO5 A;  2PGS A;  5TK6 A;  4TNR A;  3LJX A;  4TO0 A;  4QG1 A;  5AO0 A;  3HC1 A;  3MEM A;  4MZ7 A;  4MCW A;  2Q14 A;  4MDZ A;  4TO1 A;  3M1T A;  4TO4 A;  4TNQ A;  4MLM A;  4X9E A;  2PAR A;  2CQZ A;  2PQ7 A;  5AO1 A;  1YNB A;  3MZO A;  4XDS A;  2PAU A;  4RXO A;  4N71 A;  4TO2 A;  3NQW A;  3I7A A;  3U1N A;  5AO4 A;  2PAQ A;  4MLN A;  3RF0 A;  4BZB A;  5AO2 A;  2DQB A;  4DMB A;  2O08 A;  4R8Z A;  4Q7H A;  5AO3 A;  2OGI A;  1VQR A;  5TK7 A;  4TNY A;  4ZWG A;  2O6I A;  5TK9 A;  4L1J A;  4QG2 A;  4ME4 A;  4RXR A;  4LRL A;  3HI0 A;  4TNP A; 
#chains in the Genus database with same CATH topology
 3NR1 A;  2GZ4 A;  4TNZ A;  4QQY A;  4QQW A;  4TO6 A;  4QFX A;  4L1J B;  3KQ5 A;  5TKA A;  1U6Z A;  3TM8 A;  3P3Q A;  1XX7 A;  3TMC A;  4RXS A;  4QFY A;  1VJ7 A;  2HEK A;  3KH1 A;  4L7W A;  4RXQ A;  4QG0 A;  4TNX A;  3IRH A;  3CCG A;  4TO3 A;  3TMB A;  4QFZ A;  3TMD A;  4Q2C A;  4L7E A;  4QG4 A;  4ZWE A;  1YOY A;  5TK8 A;  3BG2 A;  2FLO A;  4BZC A;  4N6W A;  4QQX A;  4RXP A;  4TO5 A;  2PGS A;  5TK6 A;  4TNR A;  3LJX A;  4TO0 A;  4QG1 A;  5AO0 A;  3SKD A;  3HC1 A;  3MEM A;  4MZ7 A;  4MCW A;  2Q14 A;  4MDZ A;  4Q2D A;  4TO1 A;  3M1T A;  4TO4 A;  4TNQ A;  4MLM A;  4X9E A;  2PAR A;  2CQZ A;  2PQ7 A;  5AO1 A;  1YNB A;  3MZO A;  4XDS A;  2PAU A;  4RXO A;  4N71 A;  4TO2 A;  3NQW A;  3I7A A;  3U1N A;  5AO4 A;  2PAQ A;  4MLN A;  3GW7 A;  3RF0 A;  4BZB A;  5AO2 A;  2DQB A;  3SK9 A;  4DMB A;  2O08 A;  4R8Z A;  4Q7H A;  5AO3 A;  2OGI A;  1VQR A;  5TK7 A;  4TNY A;  4QQZ A;  4ZWG A;  2O6I A;  5TK9 A;  4L1J A;  4QG2 A;  4ME4 A;  4RXR A;  3S4L A;  4LRL A;  3HI0 A;  4TNP A; 
#chains in the Genus database with same CATH homology
 3NR1 A;  2GZ4 A;  4TNZ A;  4QQY A;  4QQW A;  4TO6 A;  4QFX A;  4L1J B;  3KQ5 A;  5TKA A;  1U6Z A;  3TM8 A;  3P3Q A;  1XX7 A;  3TMC A;  4RXS A;  4QFY A;  1VJ7 A;  2HEK A;  3KH1 A;  4L7W A;  4RXQ A;  4QG0 A;  4TNX A;  3IRH A;  3CCG A;  4TO3 A;  3TMB A;  4QFZ A;  3TMD A;  4Q2C A;  4L7E A;  4QG4 A;  4ZWE A;  1YOY A;  5TK8 A;  3BG2 A;  2FLO A;  4BZC A;  4N6W A;  4QQX A;  4RXP A;  4TO5 A;  2PGS A;  5TK6 A;  4TNR A;  3LJX A;  4TO0 A;  4QG1 A;  5AO0 A;  3SKD A;  3HC1 A;  3MEM A;  4MZ7 A;  4MCW A;  2Q14 A;  4MDZ A;  4Q2D A;  4TO1 A;  3M1T A;  4TO4 A;  4TNQ A;  4MLM A;  4X9E A;  2PAR A;  2CQZ A;  2PQ7 A;  5AO1 A;  1YNB A;  3MZO A;  4XDS A;  2PAU A;  4RXO A;  4N71 A;  4TO2 A;  3NQW A;  3I7A A;  3U1N A;  5AO4 A;  2PAQ A;  4MLN A;  3GW7 A;  3RF0 A;  4BZB A;  5AO2 A;  2DQB A;  3SK9 A;  4DMB A;  2O08 A;  4R8Z A;  4Q7H A;  5AO3 A;  2OGI A;  1VQR A;  5TK7 A;  4TNY A;  4QQZ A;  4ZWG A;  2O6I A;  5TK9 A;  4L1J A;  4QG2 A;  4ME4 A;  4RXR A;  3S4L A;  4LRL A;  3HI0 A;  4TNP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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