1YNFA

Crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
440
structure length
429
Chain Sequence
NAWEVNFDGLVGLTHHYAHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Succinylarginine dihydrolase
publication title Crystal structure of N-succinylarginine dihydrolase AstB, bound to substrate and product, an enzyme from the arginine catabolic pathway of Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 157
structure length 429
sequence length 440
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.3.23: N-succinylarginine dihydrolase.
pdb deposition date 2005-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04996 AstB Succinylarginine dihydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.20 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A Succinylarginine dihydrolase 1ynfA00
1YNHA 1YNFA 1YNIA
chains in the Genus database with same CATH superfamily
2ACIA 3APMA 1YNIA 4N2BA 1WD9A 8JDWA 3B1UA 4N28A 4N2HA 5HP5A 2CI7A 4N2NA 4N2LA 1BWDA 2DEWX 3H7KA 4N2FA 2JDXA 5AK7A 4N26A 2CMUA 3JDWA 4N2CA 5AN9I 1LXYA 3B1TA 4N2IA 4N25A 4N2DA 4X8GA 1VKPA 3I4AA 4N20A 2AAFA 2Q3UA 4YTGA 2JDWA 2C6ZA 3P8EA 4N2GA 6JDWA 1YNFA 2ABRA 1YNHA 1ZBRA 2CI1A 2CI3A 1S9RA 4N22A 2DEXX 3I2EA 1XKNA 4X8CA 2JERA 3RHYA 4E4JA 1WD8A 2EWOA 4YTBA 3HVMA 2CI4A 4N2MA 4DKTA 1JDXA 9JDWA 2JAJA 3P8PA 7JDWA 4JDWA 4N2EA 1G62A 1H70A 3H7CX 4N2AA 2JAIA 1WDAA 1RXXA 1JDWA 2CI5A 3BPBA 4YT9A 2DW5A 5AK8A 4N24A 4BOFA 2DEYX 2CI6A 4N2KA 2A9GA 5JDWA 1G61A 3APNA 5M3QA
chains in the Genus database with same CATH topology
1YNHA 1YNFA 1YNIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YNH A;  1YNF A;  1YNI A; 
#chains in the Genus database with same CATH topology
 2ACI A;  3APM A;  1YNI A;  4N2B A;  1WD9 A;  8JDW A;  3B1U A;  4N28 A;  4N2H A;  5HP5 A;  2CI7 A;  4N2N A;  4N2L A;  1BWD A;  2DEW X;  3H7K A;  4N2F A;  2JDX A;  5AK7 A;  4N26 A;  2CMU A;  3JDW A;  4N2C A;  5AN9 I;  1LXY A;  3B1T A;  4N2I A;  4N25 A;  4N2D A;  4X8G A;  1VKP A;  3I4A A;  4N20 A;  2AAF A;  2Q3U A;  4YTG A;  2JDW A;  2C6Z A;  3P8E A;  4N2G A;  6JDW A;  1YNF A;  2ABR A;  1YNH A;  1ZBR A;  2CI1 A;  2CI3 A;  1S9R A;  4N22 A;  2DEX X;  3I2E A;  1XKN A;  4X8C A;  2JER A;  3RHY A;  4E4J A;  1WD8 A;  2EWO A;  4YTB A;  3HVM A;  2CI4 A;  4N2M A;  4DKT A;  1JDX A;  9JDW A;  2JAJ A;  3P8P A;  7JDW A;  4JDW A;  4N2E A;  1G62 A;  1H70 A;  3H7C X;  4N2A A;  2JAI A;  1WDA A;  1RXX A;  1JDW A;  2CI5 A;  3BPB A;  4YT9 A;  2DW5 A;  5AK8 A;  4N24 A;  4BOF A;  2DEY X;  2CI6 A;  4N2K A;  2A9G A;  5JDW A;  1G61 A;  3APN A;  5M3Q A; 
#chains in the Genus database with same CATH homology
 1YNH A;  1YNF A;  1YNI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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