1YOYA

Predicted coding region af1432 from archaeoglobus fulgidus
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
166
structure length
146
Chain Sequence
MDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHSFRAAIIAFILALKSGESVEKACKAATAALFHDLHEAREEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEIYRVLMERKNPVWW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein AF1432
publication title The crystal structure of predicted coding region AF1432 from Archaeoglobus Fulgidus
rcsb
source organism Archaeoglobus fulgidus
total genus 56
structure length 146
sequence length 166
ec nomenclature
pdb deposition date 2005-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 1yoyA00
3TMDA 4QG4A 4MCWA 3BG2A 3NQWA 1U6ZA 2PAQA 4MDZA 4L1JB 1XX7A 4TO3A 4LRLA 4Q7HA 4ME4A 4ZWEA 4N71A 4TO5A 4QFXA 3TMBA 4QG1A 4TO2A 4ZWGA 5TK8A 3P3QA 5AO2A 4BZCA 2PQ7A 3MEMA 4X9EA 4TNYA 4RXPA 4MLMA 1YOYA 4QFYA 4TNZA 4TNQA 4XDSA 3RF0A 2CQZA 5AO3A 1VJ7A 2HEKA 4TO0A 4RXQA 4RXSA 4L7EA 5AO4A 5TK7A 3I7AA 3U1NA 4TO6A 1VQRA 3M1TA 4TO4A 2OGIA 3KH1A 2DQBA 5TK6A 3NR1A 4TNPA 4TNRA 3TMCA 4TO1A 1YNBA 2GZ4A 2FLOA 5TK9A 3IRHA 4MZ7A 2PGSA 4DMBA 2PAUA 4QFZA 3LJXA 4QG2A 3CCGA 4BZBA 5AO1A 3HI0A 2PARA 4MLNA 4TNXA 5AO0A 5TKAA 4RXOA 3HC1A 4L1JA 2O6IA 2Q14A 4N6WA 4R8ZA 4RXRA 2O08A 3TM8A 4L7WA 3MZOA 4QG0A
chains in the Genus database with same CATH superfamily
3TMDA 4QQXA 4QG4A 4MCWA 3BG2A 3SKDA 3NQWA 1U6ZA 2PAQA 4MDZA 4L1JB 1XX7A 4TO3A 4LRLA 4Q7HA 4ME4A 4ZWEA 4N71A 4TO5A 4QFXA 3TMBA 4QG1A 4TO2A 4ZWGA 5TK8A 3P3QA 5AO2A 4BZCA 2PQ7A 4QQWA 4QQZA 3MEMA 4X9EA 4TNYA 4RXPA 4MLMA 1YOYA 4QFYA 4TNZA 4TNQA 4XDSA 3KQ5A 2CQZA 3RF0A 5AO3A 1VJ7A 2HEKA 4TO0A 4RXQA 4RXSA 4L7EA 5AO4A 5TK7A 3I7AA 3U1NA 4TO6A 4Q2CA 1VQRA 3M1TA 4TO4A 2OGIA 4Q2DA 3GW7A 3KH1A 3S4LA 2DQBA 5TK6A 3NR1A 4TNPA 4TNRA 3TMCA 4TO1A 1YNBA 2GZ4A 2FLOA 5TK9A 3IRHA 4MZ7A 2PGSA 4DMBA 2PAUA 4QFZA 3LJXA 4QG2A 3CCGA 3SK9A 4BZBA 5AO1A 3HI0A 2PARA 4MLNA 4TNXA 5AO0A 5TKAA 4RXOA 3HC1A 4L1JA 4QQYA 2O6IA 2Q14A 4N6WA 4R8ZA 4RXRA 2O08A 3TM8A 4L7WA 3MZOA 4QG0A
chains in the Genus database with same CATH topology
3TMDA 4QQXA 4QG4A 4MCWA 3BG2A 3SKDA 3NQWA 1U6ZA 2PAQA 4MDZA 4L1JB 1XX7A 4TO3A 4LRLA 4Q7HA 4ME4A 4ZWEA 4N71A 4TO5A 4QFXA 3TMBA 4QG1A 4TO2A 4ZWGA 5TK8A 3P3QA 5AO2A 4BZCA 2PQ7A 4QQWA 4QQZA 3MEMA 4X9EA 4TNYA 4RXPA 4MLMA 1YOYA 4QFYA 4TNZA 4TNQA 4XDSA 3KQ5A 2CQZA 3RF0A 5AO3A 1VJ7A 2HEKA 4TO0A 4RXQA 4RXSA 4L7EA 5AO4A 5TK7A 3I7AA 3U1NA 4TO6A 4Q2CA 1VQRA 3M1TA 4TO4A 2OGIA 4Q2DA 3GW7A 3KH1A 3S4LA 2DQBA 5TK6A 3NR1A 4TNPA 4TNRA 3TMCA 4TO1A 1YNBA 2GZ4A 2FLOA 5TK9A 3IRHA 4MZ7A 2PGSA 4DMBA 2PAUA 4QFZA 3LJXA 4QG2A 3CCGA 3SK9A 4BZBA 5AO1A 3HI0A 2PARA 4MLNA 4TNXA 5AO0A 5TKAA 4RXOA 3HC1A 4L1JA 4QQYA 2O6IA 2Q14A 4N6WA 4R8ZA 4RXRA 2O08A 3TM8A 4L7WA 3MZOA 4QG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TMD A;  4QG4 A;  4MCW A;  3BG2 A;  3NQW A;  1U6Z A;  2PAQ A;  4MDZ A;  4L1J B;  1XX7 A;  4TO3 A;  4LRL A;  4Q7H A;  4ME4 A;  4ZWE A;  4N71 A;  4TO5 A;  4QFX A;  3TMB A;  4QG1 A;  4TO2 A;  4ZWG A;  5TK8 A;  3P3Q A;  5AO2 A;  4BZC A;  2PQ7 A;  3MEM A;  4X9E A;  4TNY A;  4RXP A;  4MLM A;  1YOY A;  4QFY A;  4TNZ A;  4TNQ A;  4XDS A;  3RF0 A;  2CQZ A;  5AO3 A;  1VJ7 A;  2HEK A;  4TO0 A;  4RXQ A;  4RXS A;  4L7E A;  5AO4 A;  5TK7 A;  3I7A A;  3U1N A;  4TO6 A;  1VQR A;  3M1T A;  4TO4 A;  2OGI A;  3KH1 A;  2DQB A;  5TK6 A;  3NR1 A;  4TNP A;  4TNR A;  3TMC A;  4TO1 A;  1YNB A;  2GZ4 A;  2FLO A;  5TK9 A;  3IRH A;  4MZ7 A;  2PGS A;  4DMB A;  2PAU A;  4QFZ A;  3LJX A;  4QG2 A;  3CCG A;  4BZB A;  5AO1 A;  3HI0 A;  2PAR A;  4MLN A;  4TNX A;  5AO0 A;  5TKA A;  4RXO A;  3HC1 A;  4L1J A;  2O6I A;  2Q14 A;  4N6W A;  4R8Z A;  4RXR A;  2O08 A;  3TM8 A;  4L7W A;  3MZO A;  4QG0 A; 
#chains in the Genus database with same CATH topology
 3TMD A;  4QQX A;  4QG4 A;  4MCW A;  3BG2 A;  3SKD A;  3NQW A;  1U6Z A;  2PAQ A;  4MDZ A;  4L1J B;  1XX7 A;  4TO3 A;  4LRL A;  4Q7H A;  4ME4 A;  4ZWE A;  4N71 A;  4TO5 A;  4QFX A;  3TMB A;  4QG1 A;  4TO2 A;  4ZWG A;  5TK8 A;  3P3Q A;  5AO2 A;  4BZC A;  2PQ7 A;  4QQW A;  4QQZ A;  3MEM A;  4X9E A;  4TNY A;  4RXP A;  4MLM A;  1YOY A;  4QFY A;  4TNZ A;  4TNQ A;  4XDS A;  3KQ5 A;  2CQZ A;  3RF0 A;  5AO3 A;  1VJ7 A;  2HEK A;  4TO0 A;  4RXQ A;  4RXS A;  4L7E A;  5AO4 A;  5TK7 A;  3I7A A;  3U1N A;  4TO6 A;  4Q2C A;  1VQR A;  3M1T A;  4TO4 A;  2OGI A;  4Q2D A;  3GW7 A;  3KH1 A;  3S4L A;  2DQB A;  5TK6 A;  3NR1 A;  4TNP A;  4TNR A;  3TMC A;  4TO1 A;  1YNB A;  2GZ4 A;  2FLO A;  5TK9 A;  3IRH A;  4MZ7 A;  2PGS A;  4DMB A;  2PAU A;  4QFZ A;  3LJX A;  4QG2 A;  3CCG A;  3SK9 A;  4BZB A;  5AO1 A;  3HI0 A;  2PAR A;  4MLN A;  4TNX A;  5AO0 A;  5TKA A;  4RXO A;  3HC1 A;  4L1J A;  4QQY A;  2O6I A;  2Q14 A;  4N6W A;  4R8Z A;  4RXR A;  2O08 A;  3TM8 A;  4L7W A;  3MZO A;  4QG0 A; 
#chains in the Genus database with same CATH homology
 3TMD A;  4QQX A;  4QG4 A;  4MCW A;  3BG2 A;  3SKD A;  3NQW A;  1U6Z A;  2PAQ A;  4MDZ A;  4L1J B;  1XX7 A;  4TO3 A;  4LRL A;  4Q7H A;  4ME4 A;  4ZWE A;  4N71 A;  4TO5 A;  4QFX A;  3TMB A;  4QG1 A;  4TO2 A;  4ZWG A;  5TK8 A;  3P3Q A;  5AO2 A;  4BZC A;  2PQ7 A;  4QQW A;  4QQZ A;  3MEM A;  4X9E A;  4TNY A;  4RXP A;  4MLM A;  1YOY A;  4QFY A;  4TNZ A;  4TNQ A;  4XDS A;  3KQ5 A;  2CQZ A;  3RF0 A;  5AO3 A;  1VJ7 A;  2HEK A;  4TO0 A;  4RXQ A;  4RXS A;  4L7E A;  5AO4 A;  5TK7 A;  3I7A A;  3U1N A;  4TO6 A;  4Q2C A;  1VQR A;  3M1T A;  4TO4 A;  2OGI A;  4Q2D A;  3GW7 A;  3KH1 A;  3S4L A;  2DQB A;  5TK6 A;  3NR1 A;  4TNP A;  4TNR A;  3TMC A;  4TO1 A;  1YNB A;  2GZ4 A;  2FLO A;  5TK9 A;  3IRH A;  4MZ7 A;  2PGS A;  4DMB A;  2PAU A;  4QFZ A;  3LJX A;  4QG2 A;  3CCG A;  3SK9 A;  4BZB A;  5AO1 A;  3HI0 A;  2PAR A;  4MLN A;  4TNX A;  5AO0 A;  5TKA A;  4RXO A;  3HC1 A;  4L1J A;  4QQY A;  2O6I A;  2Q14 A;  4N6W A;  4R8Z A;  4RXR A;  2O08 A;  3TM8 A;  4L7W A;  3MZO A;  4QG0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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