1YU0A

Major tropism determinant p1 variant
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Major Tropism Determinant (Mtd-P1)
publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein
total genus 99
structure length 376
sequence length 376
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu0A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu0A03
1Z70X 1YU0A 2AIIX 2AIKX 2Y3CA 2AFTX 2AFYX 1Y1HX 1Y1GX 1Y1IX 2HIBX 1YU1A 1YU4A 2IOUA 2Q17A 1Y1JX 1YU3A 1Y1EX 2AIJX 1YU2A 1Y4JA 2HI8X 1Y1FX
chains in the Genus database with same CATH superfamily
4Z2LA 1KS0A 2Y2GA 3L2AA 2Y3CA 2JE5A 4NZ4A 4IBJA 1Y1HX 1EAKA 1Y1GX 4QNLA 4MB5A 2HIBX 1YU4A 2Y2OA 4OJOA 2V5OA 2FFFB 1E6PA 1CXWA 1Y1JX 1E6NA 1GOIA 2Y2MA 4OJLA 4IBIA 4HMCA 1YU2A 2BG1A 1ED7A 2HI8X 3FKEA 4IBBA 4NZ1A 2RTSA 4IBCA 3WD2A 1Z70X 3L25A 5BPVA 1YU0A 1E6RA 2AIIX 4Z2HA 2AIKX 1GXDA 1H0IA 1L6JA 4MB3A 2AFTX 2XD5A 2Y2NA 1Y1IX 4Z2JA 1UR8A 4NYUA 3HONA 2Y2LA 4OJ6A 3HSHA 4IJEA 3WD0A 1YUEA 1PDCA 2JCHA 1E88A 2Y2KA 1YU3A 4IBEA 1E15A 4GHLA 2D49A 4NZ5A 1E8BA 1E6ZA 4NYYA 2UWXA 4Z2IA 4OUIA 4IBKA 2Y2PA 4OJ5A 1YU1A 4IJFA 3MQLA 4Z2GA 3WD1A 1UR9A 2IOUA 1AIWA 1H0GA 4MB4A 4OJPA 2Q17A 4NZ3A 1H8PA 4IBGA 2FN2A 2Y2IA 4LG2A 3L26A 1W1PA 3WD3A 2AIJX 4HMDA 3N3FA 1Y1FX 2AFYX 4IBDA 1QO6A 1W1VA 4TX8A 3L27A 3M7PA 4Z2KA 1OGGA 3L28A 4GH9A 3WD4A 4GHAA 1GPFA 1O6IA 1CK7A 1W1TA 2Y2HA 3L29A 3KS8A 2XD1A 2Y2JA 1Y1EX 1OGBA 1W1YA 3KS4A 4NY2A 1Y4JA 4IBFA 2Y2QA 3WX7A 1J7MA 4HMEA
chains in the Genus database with same CATH topology
2Y2GA 3L2AA 2Y3CA 2JE5A 4NZ4A 4IBJA 1Y1HX 1Y1GX 4QNLA 2HIBX 1YU4A 2Y2OA 4OJOA 2FFFB 1Y1JX 2Y2MA 4OJLA 4IBIA 1YU2A 2BG1A 2HI8X 3FKEA 4IBBA 4NZ1A 4IBCA 1Z70X 3L25A 5BPVA 1YU0A 2AIIX 2AIKX 2AFTX 2XD5A 2Y2NA 1Y1IX 4NYUA 3HONA 2Y2LA 4OJ6A 3HSHA 4IJEA 1YUEA 2JCHA 2Y2KA 1YU3A 4IBEA 4GHLA 4NZ5A 4NYYA 2UWXA 4OUIA 4IBKA 2Y2PA 4OJ5A 1YU1A 4IJFA 2IOUA 2Q17A 4OJPA 4NZ3A 4IBGA 2Y2IA 4LG2A 3L26A 2AIJX 3N3FA 2AFYX 1Y1FX 4IBDA 3L27A 3L28A 4GH9A 4GHAA 2Y2HA 3KS8A 3L29A 2XD1A 2Y2JA 1Y1EX 3KS4A 4NY2A 1Y4JA 4IBFA 2Y2QA 3WX7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z70 X;  1YU0 A;  2AII X;  2AIK X;  2Y3C A;  2AFT X;  2AFY X;  1Y1H X;  1Y1G X;  1Y1I X;  2HIB X;  1YU1 A;  1YU4 A;  2IOU A;  2Q17 A;  1Y1J X;  1YU3 A;  1Y1E X;  2AIJ X;  1YU2 A;  1Y4J A;  2HI8 X;  1Y1F X; 
#chains in the Genus database with same CATH topology
 4Z2L A;  1KS0 A;  2Y2G A;  3L2A A;  2Y3C A;  2JE5 A;  4NZ4 A;  4IBJ A;  1Y1H X;  1EAK A;  1Y1G X;  4QNL A;  4MB5 A;  2HIB X;  1YU4 A;  2Y2O A;  4OJO A;  2V5O A;  2FFF B;  1E6P A;  1CXW A;  1Y1J X;  1E6N A;  1GOI A;  2Y2M A;  4OJL A;  4IBI A;  4HMC A;  1YU2 A;  2BG1 A;  1ED7 A;  2HI8 X;  3FKE A;  4IBB A;  4NZ1 A;  2RTS A;  4IBC A;  3WD2 A;  1Z70 X;  3L25 A;  5BPV A;  1YU0 A;  1E6R A;  2AII X;  4Z2H A;  2AIK X;  1GXD A;  1H0I A;  1L6J A;  4MB3 A;  2AFT X;  2XD5 A;  2Y2N A;  1Y1I X;  4Z2J A;  1UR8 A;  4NYU A;  3HON A;  2Y2L A;  4OJ6 A;  3HSH A;  4IJE A;  3WD0 A;  1YUE A;  1PDC A;  2JCH A;  1E88 A;  2Y2K A;  1YU3 A;  4IBE A;  1E15 A;  4GHL A;  2D49 A;  4NZ5 A;  1E8B A;  1E6Z A;  4NYY A;  2UWX A;  4Z2I A;  4OUI A;  4IBK A;  2Y2P A;  4OJ5 A;  1YU1 A;  4IJF A;  3MQL A;  4Z2G A;  3WD1 A;  1UR9 A;  2IOU A;  1AIW A;  1H0G A;  4MB4 A;  4OJP A;  2Q17 A;  4NZ3 A;  1H8P A;  4IBG A;  2FN2 A;  2Y2I A;  4LG2 A;  3L26 A;  1W1P A;  3WD3 A;  2AIJ X;  4HMD A;  3N3F A;  1Y1F X;  2AFY X;  4IBD A;  1QO6 A;  1W1V A;  4TX8 A;  3L27 A;  3M7P A;  4Z2K A;  1OGG A;  3L28 A;  4GH9 A;  3WD4 A;  4GHA A;  1GPF A;  1O6I A;  1CK7 A;  1W1T A;  2Y2H A;  3L29 A;  3KS8 A;  2XD1 A;  2Y2J A;  1Y1E X;  1OGB A;  1W1Y A;  3KS4 A;  4NY2 A;  1Y4J A;  4IBF A;  2Y2Q A;  3WX7 A;  1J7M A;  4HME A; 
#chains in the Genus database with same CATH homology
 2Y2G A;  3L2A A;  2Y3C A;  2JE5 A;  4NZ4 A;  4IBJ A;  1Y1H X;  1Y1G X;  4QNL A;  2HIB X;  1YU4 A;  2Y2O A;  4OJO A;  2FFF B;  1Y1J X;  2Y2M A;  4OJL A;  4IBI A;  1YU2 A;  2BG1 A;  2HI8 X;  3FKE A;  4IBB A;  4NZ1 A;  4IBC A;  1Z70 X;  3L25 A;  5BPV A;  1YU0 A;  2AII X;  2AIK X;  2AFT X;  2XD5 A;  2Y2N A;  1Y1I X;  4NYU A;  3HON A;  2Y2L A;  4OJ6 A;  3HSH A;  4IJE A;  1YUE A;  2JCH A;  2Y2K A;  1YU3 A;  4IBE A;  4GHL A;  4NZ5 A;  4NYY A;  2UWX A;  4OUI A;  4IBK A;  2Y2P A;  4OJ5 A;  1YU1 A;  4IJF A;  2IOU A;  2Q17 A;  4OJP A;  4NZ3 A;  4IBG A;  2Y2I A;  4LG2 A;  3L26 A;  2AIJ X;  3N3F A;  2AFY X;  1Y1F X;  4IBD A;  3L27 A;  3L28 A;  4GH9 A;  4GHA A;  2Y2H A;  3KS8 A;  3L29 A;  2XD1 A;  2Y2J A;  1Y1E X;  3KS4 A;  4NY2 A;  1Y4J A;  4IBF A;  2Y2Q A;  3WX7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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