1YU1A

Major tropism determinant p3c variant
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGNWSNTSHSGSRAALWYVGPSNSFAGIGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Major Tropism Determinant (Mtd-P3c)
publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein
total genus 97
structure length 376
sequence length 376
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu1A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu1A03
1YU4A 2IOUA 1Z70X 2AIKX 2AFTX 1YU1A 2AIJX 1Y1HX 2AFYX 1Y1GX 2Y3CA 1Y1IX 1Y1JX 1Y1FX 2HIBX 1Y4JA 2HI8X 2AIIX 1YU2A 1YU0A 1YU3A 1Y1EX 2Q17A
chains in the Genus database with same CATH superfamily
1YU4A 3N3FA 3L25A 3WD3A 2AIKX 2JE5A 3WD1A 4MB4A 4IBFA 4Z2JA 3FKEA 1Y1HX 2AFYX 5BPVA 3WD0A 4IBIA 4GHAA 1W1VA 4IBJA 1E6PA 1Y1FX 2Y2PA 1CXWA 4OJ5A 2BG1A 3L2AA 2AIIX 4NZ5A 4TX8A 1E8BA 2Y2IA 3WX7A 1W1YA 1ED7A 2XD1A 1Y1EX 2Y2LA 2IOUA 4MB3A 1AIWA 4NY2A 4Z2GA 1EAKA 1UR8A 2AFTX 4Z2IA 1E88A 4GHLA 1W1TA 4MB5A 2Y2HA 2Y2MA 4IBDA 3WD2A 3KS4A 4IBEA 2HIBX 2JCHA 1Y4JA 1J7MA 1E15A 4OJ6A 2HI8X 4NYYA 2Y2NA 4IBCA 1E6ZA 3WD4A 1QO6A 1YU3A 1GOIA 3M7PA 2Y2QA 1H0GA 1OGBA 3L27A 4OJPA 1E6RA 4IBBA 1YU1A 2AIJX 4NYUA 4OJLA 1PDCA 2V5OA 2UWXA 2Y3CA 4NZ1A 2RTSA 3L29A 1YUEA 3HSHA 3MQLA 1H8PA 2FFFB 4NZ3A 4HMEA 2XD5A 1GPFA 2Y2KA 2Y2GA 1GXDA 4IJEA 1W1PA 1UR9A 3L26A 2Q17A 4Z2HA 4OJOA 1Z70X 1E6NA 4IBGA 4HMDA 4IBKA 3KS8A 1CK7A 3HONA 4NZ4A 1Y1GX 4Z2LA 1OGGA 4IJFA 4HMCA 1Y1IX 1Y1JX 1L6JA 2D49A 4QNLA 3L28A 4OUIA 4GH9A 4Z2KA 1H0IA 4LG2A 2Y2OA 2FN2A 1YU2A 1YU0A 2Y2JA 1KS0A 1O6IA
chains in the Genus database with same CATH topology
1YU4A 3N3FA 3L25A 2AIKX 2JE5A 4IBFA 3FKEA 1Y1HX 2AFYX 5BPVA 4IBIA 4GHAA 4IBJA 1Y1FX 2Y2PA 4OJ5A 2BG1A 3L2AA 2AIIX 4NZ5A 2Y2IA 3WX7A 2XD1A 1Y1EX 2Y2LA 2IOUA 4NY2A 2AFTX 4GHLA 2Y2HA 2Y2MA 4IBDA 3KS4A 4IBEA 2HIBX 2JCHA 1Y4JA 4OJ6A 2HI8X 4NYYA 2Y2NA 4IBCA 1YU3A 2Y2QA 3L27A 4OJPA 4IBBA 1YU1A 2AIJX 4NYUA 4OJLA 2UWXA 2Y3CA 4NZ1A 3L29A 1YUEA 3HSHA 2FFFB 4NZ3A 2XD5A 2Y2KA 2Y2GA 4IJEA 3L26A 2Q17A 4OJOA 1Z70X 4IBGA 4IBKA 3KS8A 3HONA 4NZ4A 1Y1GX 4IJFA 1Y1IX 1Y1JX 4QNLA 3L28A 4OUIA 4GH9A 4LG2A 2Y2OA 1YU2A 1YU0A 2Y2JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YU4 A;  2IOU A;  1Z70 X;  2AIK X;  2AFT X;  1YU1 A;  2AIJ X;  1Y1H X;  2AFY X;  1Y1G X;  2Y3C A;  1Y1I X;  1Y1J X;  1Y1F X;  2HIB X;  1Y4J A;  2HI8 X;  2AII X;  1YU2 A;  1YU0 A;  1YU3 A;  1Y1E X;  2Q17 A; 
#chains in the Genus database with same CATH topology
 1YU4 A;  3N3F A;  3L25 A;  3WD3 A;  2AIK X;  2JE5 A;  3WD1 A;  4MB4 A;  4IBF A;  4Z2J A;  3FKE A;  1Y1H X;  2AFY X;  5BPV A;  3WD0 A;  4IBI A;  4GHA A;  1W1V A;  4IBJ A;  1E6P A;  1Y1F X;  2Y2P A;  1CXW A;  4OJ5 A;  2BG1 A;  3L2A A;  2AII X;  4NZ5 A;  4TX8 A;  1E8B A;  2Y2I A;  3WX7 A;  1W1Y A;  1ED7 A;  2XD1 A;  1Y1E X;  2Y2L A;  2IOU A;  4MB3 A;  1AIW A;  4NY2 A;  4Z2G A;  1EAK A;  1UR8 A;  2AFT X;  4Z2I A;  1E88 A;  4GHL A;  1W1T A;  4MB5 A;  2Y2H A;  2Y2M A;  4IBD A;  3WD2 A;  3KS4 A;  4IBE A;  2HIB X;  2JCH A;  1Y4J A;  1J7M A;  1E15 A;  4OJ6 A;  2HI8 X;  4NYY A;  2Y2N A;  4IBC A;  1E6Z A;  3WD4 A;  1QO6 A;  1YU3 A;  1GOI A;  3M7P A;  2Y2Q A;  1H0G A;  1OGB A;  3L27 A;  4OJP A;  1E6R A;  4IBB A;  1YU1 A;  2AIJ X;  4NYU A;  4OJL A;  1PDC A;  2V5O A;  2UWX A;  2Y3C A;  4NZ1 A;  2RTS A;  3L29 A;  1YUE A;  3HSH A;  3MQL A;  1H8P A;  2FFF B;  4NZ3 A;  4HME A;  2XD5 A;  1GPF A;  2Y2K A;  2Y2G A;  1GXD A;  4IJE A;  1W1P A;  1UR9 A;  3L26 A;  2Q17 A;  4Z2H A;  4OJO A;  1Z70 X;  1E6N A;  4IBG A;  4HMD A;  4IBK A;  3KS8 A;  1CK7 A;  3HON A;  4NZ4 A;  1Y1G X;  4Z2L A;  1OGG A;  4IJF A;  4HMC A;  1Y1I X;  1Y1J X;  1L6J A;  2D49 A;  4QNL A;  3L28 A;  4OUI A;  4GH9 A;  4Z2K A;  1H0I A;  4LG2 A;  2Y2O A;  2FN2 A;  1YU2 A;  1YU0 A;  2Y2J A;  1KS0 A;  1O6I A; 
#chains in the Genus database with same CATH homology
 1YU4 A;  3N3F A;  3L25 A;  2AIK X;  2JE5 A;  4IBF A;  3FKE A;  1Y1H X;  2AFY X;  5BPV A;  4IBI A;  4GHA A;  4IBJ A;  1Y1F X;  2Y2P A;  4OJ5 A;  2BG1 A;  3L2A A;  2AII X;  4NZ5 A;  2Y2I A;  3WX7 A;  2XD1 A;  1Y1E X;  2Y2L A;  2IOU A;  4NY2 A;  2AFT X;  4GHL A;  2Y2H A;  2Y2M A;  4IBD A;  3KS4 A;  4IBE A;  2HIB X;  2JCH A;  1Y4J A;  4OJ6 A;  2HI8 X;  4NYY A;  2Y2N A;  4IBC A;  1YU3 A;  2Y2Q A;  3L27 A;  4OJP A;  4IBB A;  1YU1 A;  2AIJ X;  4NYU A;  4OJL A;  2UWX A;  2Y3C A;  4NZ1 A;  3L29 A;  1YUE A;  3HSH A;  2FFF B;  4NZ3 A;  2XD5 A;  2Y2K A;  2Y2G A;  4IJE A;  3L26 A;  2Q17 A;  4OJO A;  1Z70 X;  4IBG A;  4IBK A;  3KS8 A;  3HON A;  4NZ4 A;  1Y1G X;  4IJF A;  1Y1I X;  1Y1J X;  4QNL A;  3L28 A;  4OUI A;  4GH9 A;  4LG2 A;  2Y2O A;  1YU2 A;  1YU0 A;  2Y2J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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