1YU1A

Major tropism determinant p3c variant
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGNWSNTSHSGSRAALWYVGPSNSFAGIGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein
molecule keywords Major Tropism Determinant (Mtd-P3c)
total genus 97
structure length 376
sequence length 376
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu1A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu1A03
1Y4JA 1Z70X 2HI8X 1Y1EX 2AIIX 1YU4A 1YU3A 2Q17A 1Y1JX 1YU0A 1Y1HX 2IOUA 1YU1A 1Y1FX 2HIBX 2AFTX 1YU2A 2AIKX 2AFYX 2AIJX 2Y3CA 1Y1GX 1Y1IX
chains in the Genus database with same CATH superfamily
3L2AA 4LG2A 4HMCA 1Y4JA 1H8PA 4GHLA 2AIIX 4NZ3A 1YUEA 4IBEA 3FKEA 1AIWA 4Z2IA 4IBFA 1E6RA 3MQLA 1Y1JX 4IBDA 2Y2HA 4IBGA 2IOUA 1YU1A 4Z2GA 2Y2PA 1W1TA 4NYUA 4OJ5A 1E15A 4NZ4A 2UWXA 4OJ6A 1H0IA 4MB4A 4NY2A 2AFYX 4Z2HA 1W1PA 2Y2IA 1L6JA 4Z2JA 3WD4A 1UR8A 3KS4A 1CK7A 1OGGA 3WD1A 1OGBA 2XD5A 3HONA 1Y1EX 3WD3A 2Y2GA 4TX8A 2FFFB 3L29A 4IBJA 2Y2JA 1UR9A 4NYYA 2HIBX 2AFTX 1E8BA 1E6ZA 3WD2A 3WX7A 3L25A 2V5OA 1Y1GX 4OUIA 1Y1IX 3M7PA 4OJOA 1EAKA 1W1VA 1W1YA 4Z2KA 2Y2KA 4GH9A 2Y2LA 4IBCA 2HI8X 4MB5A 1YU4A 1YU3A 5BPVA 3KS8A 4NZ1A 4IBKA 1E6NA 1PDCA 1H0GA 4GHAA 3N3FA 1Y1HX 2Y2QA 1GXDA 2Y2MA 4QNLA 4OJPA 1CXWA 1ED7A 1Y1FX 1YU2A 1QO6A 3HSHA 3L28A 4IJEA 4HMEA 4NZ5A 2JCHA 1KS0A 1E88A 4IBBA 1O6IA 1J7MA 2BG1A 4IBIA 1Z70X 1GPFA 4HMDA 3WD0A 4IJFA 2RTSA 2Q17A 4OJLA 2Y2NA 2JE5A 2D49A 1YU0A 1E6PA 3L27A 4MB3A 2FN2A 2XD1A 2Y2OA 2AIKX 3L26A 4Z2LA 2AIJX 2Y3CA 1GOIA
chains in the Genus database with same CATH topology
3L2AA 4LG2A 1Y4JA 4GHLA 2AIIX 4NZ3A 1YUEA 4IBEA 3FKEA 4IBFA 1Y1JX 4IBDA 2Y2HA 4IBGA 2IOUA 1YU1A 2Y2PA 4NYUA 4OJ5A 4OJ6A 4NZ4A 2UWXA 4NY2A 2AFYX 2Y2IA 3KS4A 2XD5A 3HONA 1Y1EX 2Y2GA 2FFFB 3L29A 4IBJA 2Y2JA 4NYYA 2HIBX 2AFTX 3WX7A 3L25A 1Y1GX 4OUIA 1Y1IX 4OJOA 2Y2KA 4GH9A 2Y2LA 4IBCA 2HI8X 5BPVA 3KS8A 1YU4A 1YU3A 4NZ1A 4IBKA 4GHAA 3N3FA 1Y1HX 2Y2QA 2Y2MA 4QNLA 4OJPA 1Y1FX 1YU2A 3HSHA 3L28A 4IJEA 4NZ5A 2JCHA 4IBBA 2BG1A 4IBIA 1Z70X 4IJFA 2Q17A 4OJLA 2Y2NA 2JE5A 1YU0A 3L27A 2XD1A 2Y2OA 2AIKX 3L26A 2AIJX 2Y3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y4J A;  1Z70 X;  2HI8 X;  1Y1E X;  2AII X;  1YU4 A;  1YU3 A;  2Q17 A;  1Y1J X;  1YU0 A;  1Y1H X;  2IOU A;  1YU1 A;  1Y1F X;  2HIB X;  2AFT X;  1YU2 A;  2AIK X;  2AFY X;  2AIJ X;  2Y3C A;  1Y1G X;  1Y1I X; 
#chains in the Genus database with same CATH topology
 3L2A A;  4LG2 A;  4HMC A;  1Y4J A;  1H8P A;  4GHL A;  2AII X;  4NZ3 A;  1YUE A;  4IBE A;  3FKE A;  1AIW A;  4Z2I A;  4IBF A;  1E6R A;  3MQL A;  1Y1J X;  4IBD A;  2Y2H A;  4IBG A;  2IOU A;  1YU1 A;  4Z2G A;  2Y2P A;  1W1T A;  4NYU A;  4OJ5 A;  1E15 A;  4NZ4 A;  2UWX A;  4OJ6 A;  1H0I A;  4MB4 A;  4NY2 A;  2AFY X;  4Z2H A;  1W1P A;  2Y2I A;  1L6J A;  4Z2J A;  3WD4 A;  1UR8 A;  3KS4 A;  1CK7 A;  1OGG A;  3WD1 A;  1OGB A;  2XD5 A;  3HON A;  1Y1E X;  3WD3 A;  2Y2G A;  4TX8 A;  2FFF B;  3L29 A;  4IBJ A;  2Y2J A;  1UR9 A;  4NYY A;  2HIB X;  2AFT X;  1E8B A;  1E6Z A;  3WD2 A;  3WX7 A;  3L25 A;  2V5O A;  1Y1G X;  4OUI A;  1Y1I X;  3M7P A;  4OJO A;  1EAK A;  1W1V A;  1W1Y A;  4Z2K A;  2Y2K A;  4GH9 A;  2Y2L A;  4IBC A;  2HI8 X;  4MB5 A;  1YU4 A;  1YU3 A;  5BPV A;  3KS8 A;  4NZ1 A;  4IBK A;  1E6N A;  1PDC A;  1H0G A;  4GHA A;  3N3F A;  1Y1H X;  2Y2Q A;  1GXD A;  2Y2M A;  4QNL A;  4OJP A;  1CXW A;  1ED7 A;  1Y1F X;  1YU2 A;  1QO6 A;  3HSH A;  3L28 A;  4IJE A;  4HME A;  4NZ5 A;  2JCH A;  1KS0 A;  1E88 A;  4IBB A;  1O6I A;  1J7M A;  2BG1 A;  4IBI A;  1Z70 X;  1GPF A;  4HMD A;  3WD0 A;  4IJF A;  2RTS A;  2Q17 A;  4OJL A;  2Y2N A;  2JE5 A;  2D49 A;  1YU0 A;  1E6P A;  3L27 A;  4MB3 A;  2FN2 A;  2XD1 A;  2Y2O A;  2AIK X;  3L26 A;  4Z2L A;  2AIJ X;  2Y3C A;  1GOI A; 
#chains in the Genus database with same CATH homology
 3L2A A;  4LG2 A;  1Y4J A;  4GHL A;  2AII X;  4NZ3 A;  1YUE A;  4IBE A;  3FKE A;  4IBF A;  1Y1J X;  4IBD A;  2Y2H A;  4IBG A;  2IOU A;  1YU1 A;  2Y2P A;  4NYU A;  4OJ5 A;  4OJ6 A;  4NZ4 A;  2UWX A;  4NY2 A;  2AFY X;  2Y2I A;  3KS4 A;  2XD5 A;  3HON A;  1Y1E X;  2Y2G A;  2FFF B;  3L29 A;  4IBJ A;  2Y2J A;  4NYY A;  2HIB X;  2AFT X;  3WX7 A;  3L25 A;  1Y1G X;  4OUI A;  1Y1I X;  4OJO A;  2Y2K A;  4GH9 A;  2Y2L A;  4IBC A;  2HI8 X;  5BPV A;  3KS8 A;  1YU4 A;  1YU3 A;  4NZ1 A;  4IBK A;  4GHA A;  3N3F A;  1Y1H X;  2Y2Q A;  2Y2M A;  4QNL A;  4OJP A;  1Y1F X;  1YU2 A;  3HSH A;  3L28 A;  4IJE A;  4NZ5 A;  2JCH A;  4IBB A;  2BG1 A;  4IBI A;  1Z70 X;  4IJF A;  2Q17 A;  4OJL A;  2Y2N A;  2JE5 A;  1YU0 A;  3L27 A;  2XD1 A;  2Y2O A;  2AIK X;  3L26 A;  2AIJ X;  2Y3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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