1YU4A

Major tropism determinant u1 variant
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGNWNSTSNSGSRAANWNSGPSNSPANIGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major Tropism Determinant (Mtd-U1)
publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
source organism Bordetella phage bmp-1
molecule tags Viral protein
total genus 93
structure length 376
sequence length 376
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu4A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu4A03
2IOUA 2Y3CA 2AFYX 2AIJX 1Y1FX 1YU3A 2HIBX 1Y1EX 1Z70X 1Y4JA 2Q17A 2HI8X 1YU4A 1Y1IX 2AIIX 1YU1A 1Y1GX 2AFTX 1YU0A 1YU2A 1Y1JX 1Y1HX 2AIKX
chains in the Genus database with same CATH superfamily
2Y3CA 2Y2OA 3MQLA 4NZ4A 4HMCA 2AIJX 1Y1FX 3L27A 4OJLA 1E15A 3KS8A 1PDCA 4GH9A 1QO6A 3L28A 1Z70X 1YU4A 4IJFA 1YU1A 1AIWA 1E8BA 1W1PA 4NYYA 3FKEA 2Y2JA 4GHAA 2Y2PA 2D49A 3HSHA 3KS4A 1E6RA 1W1YA 3L26A 2AFTX 1OGGA 1H0IA 3WD2A 1E6NA 2BG1A 2IOUA 1YUEA 3M7PA 3HONA 4NYUA 4QNLA 4NZ3A 1ED7A 2Y2KA 2FFFB 4HMDA 4IBKA 4OJ6A 1W1TA 4GHLA 2AIIX 3WD1A 2Y2QA 4LG2A 2RTSA 3WX7A 4IBJA 4NZ1A 1EAKA 1YU2A 1Y1HX 2Y2MA 2AFYX 4IJEA 2XD5A 2V5OA 2XD1A 4OJPA 1H8PA 2Y2IA 4MB3A 4IBIA 2JCHA 3L25A 4Z2LA 1Y4JA 4IBEA 4MB5A 4OJ5A 1Y1IX 4NY2A 4Z2GA 3N3FA 4IBDA 1O6IA 3WD0A 1Y1GX 3L2AA 1E88A 3WD4A 4IBFA 1E6PA 4OUIA 1GPFA 4Z2IA 2Y2GA 1OGBA 1CK7A 4Z2HA 1W1VA 4MB4A 1KS0A 5BPVA 1CXWA 4HMEA 1GOIA 4Z2KA 4TX8A 3WD3A 1YU3A 2UWXA 2HIBX 4IBGA 2Y2HA 1Y1EX 1H0GA 4IBCA 4Z2JA 2Q17A 2HI8X 1UR8A 1UR9A 1GXDA 3L29A 2Y2NA 2JE5A 4OJOA 4IBBA 1J7MA 2FN2A 1E6ZA 1YU0A 2Y2LA 1L6JA 1Y1JX 4NZ5A 2AIKX
chains in the Genus database with same CATH topology
2Y3CA 2Y2OA 4NZ4A 2AIJX 1Y1FX 3L27A 4OJLA 3KS8A 4GH9A 3L28A 1Z70X 1YU4A 4IJFA 1YU1A 4NYYA 3FKEA 2Y2JA 4GHAA 2Y2PA 3HSHA 3KS4A 2AFTX 3L26A 2BG1A 2IOUA 1YUEA 3HONA 4NYUA 4QNLA 4NZ3A 2Y2KA 2FFFB 4IBKA 4OJ6A 4GHLA 2AIIX 2Y2QA 4LG2A 3WX7A 4IBJA 4NZ1A 1YU2A 2Y2MA 2AFYX 4IJEA 2XD5A 2XD1A 4OJPA 2Y2IA 4IBIA 2JCHA 3L25A 1Y4JA 4IBEA 4OJ5A 1Y1IX 4NY2A 3N3FA 4IBDA 1Y1GX 3L2AA 4IBFA 4OUIA 2Y2GA 5BPVA 4NZ5A 1YU3A 2UWXA 2HIBX 4IBGA 2Y2HA 1Y1EX 4IBCA 2Q17A 2HI8X 3L29A 2Y2NA 2JE5A 4OJOA 4IBBA 1YU0A 2Y2LA 1Y1JX 1Y1HX 2AIKX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IOU A;  2Y3C A;  2AFY X;  2AIJ X;  1Y1F X;  1YU3 A;  2HIB X;  1Y1E X;  1Z70 X;  1Y4J A;  2Q17 A;  2HI8 X;  1YU4 A;  1Y1I X;  2AII X;  1YU1 A;  1Y1G X;  2AFT X;  1YU0 A;  1YU2 A;  1Y1J X;  1Y1H X;  2AIK X; 
#chains in the Genus database with same CATH topology
 2Y3C A;  2Y2O A;  3MQL A;  4NZ4 A;  4HMC A;  2AIJ X;  1Y1F X;  3L27 A;  4OJL A;  1E15 A;  3KS8 A;  1PDC A;  4GH9 A;  1QO6 A;  3L28 A;  1Z70 X;  1YU4 A;  4IJF A;  1YU1 A;  1AIW A;  1E8B A;  1W1P A;  4NYY A;  3FKE A;  2Y2J A;  4GHA A;  2Y2P A;  2D49 A;  3HSH A;  3KS4 A;  1E6R A;  1W1Y A;  3L26 A;  2AFT X;  1OGG A;  1H0I A;  3WD2 A;  1E6N A;  2BG1 A;  2IOU A;  1YUE A;  3M7P A;  3HON A;  4NYU A;  4QNL A;  4NZ3 A;  1ED7 A;  2Y2K A;  2FFF B;  4HMD A;  4IBK A;  4OJ6 A;  1W1T A;  4GHL A;  2AII X;  3WD1 A;  2Y2Q A;  4LG2 A;  2RTS A;  3WX7 A;  4IBJ A;  4NZ1 A;  1EAK A;  1YU2 A;  1Y1H X;  2Y2M A;  2AFY X;  4IJE A;  2XD5 A;  2V5O A;  2XD1 A;  4OJP A;  1H8P A;  2Y2I A;  4MB3 A;  4IBI A;  2JCH A;  3L25 A;  4Z2L A;  1Y4J A;  4IBE A;  4MB5 A;  4OJ5 A;  1Y1I X;  4NY2 A;  4Z2G A;  3N3F A;  4IBD A;  1O6I A;  3WD0 A;  1Y1G X;  3L2A A;  1E88 A;  3WD4 A;  4IBF A;  1E6P A;  4OUI A;  1GPF A;  4Z2I A;  2Y2G A;  1OGB A;  1CK7 A;  4Z2H A;  1W1V A;  4MB4 A;  1KS0 A;  5BPV A;  1CXW A;  4HME A;  1GOI A;  4Z2K A;  4TX8 A;  3WD3 A;  1YU3 A;  2UWX A;  2HIB X;  4IBG A;  2Y2H A;  1Y1E X;  1H0G A;  4IBC A;  4Z2J A;  2Q17 A;  2HI8 X;  1UR8 A;  1UR9 A;  1GXD A;  3L29 A;  2Y2N A;  2JE5 A;  4OJO A;  4IBB A;  1J7M A;  2FN2 A;  1E6Z A;  1YU0 A;  2Y2L A;  1L6J A;  1Y1J X;  4NZ5 A;  2AIK X; 
#chains in the Genus database with same CATH homology
 2Y3C A;  2Y2O A;  4NZ4 A;  2AIJ X;  1Y1F X;  3L27 A;  4OJL A;  3KS8 A;  4GH9 A;  3L28 A;  1Z70 X;  1YU4 A;  4IJF A;  1YU1 A;  4NYY A;  3FKE A;  2Y2J A;  4GHA A;  2Y2P A;  3HSH A;  3KS4 A;  2AFT X;  3L26 A;  2BG1 A;  2IOU A;  1YUE A;  3HON A;  4NYU A;  4QNL A;  4NZ3 A;  2Y2K A;  2FFF B;  4IBK A;  4OJ6 A;  4GHL A;  2AII X;  2Y2Q A;  4LG2 A;  3WX7 A;  4IBJ A;  4NZ1 A;  1YU2 A;  2Y2M A;  2AFY X;  4IJE A;  2XD5 A;  2XD1 A;  4OJP A;  2Y2I A;  4IBI A;  2JCH A;  3L25 A;  1Y4J A;  4IBE A;  4OJ5 A;  1Y1I X;  4NY2 A;  3N3F A;  4IBD A;  1Y1G X;  3L2A A;  4IBF A;  4OUI A;  2Y2G A;  5BPV A;  4NZ5 A;  1YU3 A;  2UWX A;  2HIB X;  4IBG A;  2Y2H A;  1Y1E X;  4IBC A;  2Q17 A;  2HI8 X;  3L29 A;  2Y2N A;  2JE5 A;  4OJO A;  4IBB A;  1YU0 A;  2Y2L A;  1Y1J X;  1Y1H X;  2AIK X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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