1YU4A

Major tropism determinant u1 variant
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGNWNSTSNSGSRAANWNSGPSNSPANIGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
molecule tags Viral protein
source organism Bordetella phage bmp-1
molecule keywords Major Tropism Determinant (Mtd-U1)
total genus 93
structure length 376
sequence length 376
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu4A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu4A03
1YU3A 1YU0A 2Q17A 2AFTX 1Y1EX 1YU2A 2Y3CA 1Z70X 1Y1JX 2AIIX 1YU4A 2HI8X 1Y1IX 1Y4JA 2HIBX 2AIKX 1Y1FX 2IOUA 1Y1GX 1YU1A 1Y1HX 2AIJX 2AFYX
chains in the Genus database with same CATH superfamily
1E6NA 4IBDA 4Z2GA 2Q17A 2AFTX 2FN2A 3WD2A 3HSHA 1PDCA 3FKEA 3WX7A 4IBCA 2Y2GA 2RTSA 1YU4A 4GHAA 4NZ5A 4OUIA 4NY2A 4OJLA 1E15A 1Y4JA 4MB3A 3L2AA 2BG1A 4Z2LA 2Y2HA 1YU1A 1Y1HX 4IBIA 4IBJA 2Y2QA 1W1VA 2Y2KA 2Y2NA 1H8PA 1CK7A 3WD0A 4MB4A 1YU2A 1L6JA 4IBGA 1UR8A 1E6PA 4OJ6A 1KS0A 1GOIA 2V5OA 3L29A 4NZ4A 1EAKA 2AIKX 4Z2HA 4IBKA 4Z2KA 5BPVA 2UWXA 3KS8A 3WD3A 4HMCA 2Y2IA 1ED7A 2XD5A 4Z2IA 4IBEA 3L28A 1H0IA 2AFYX 1YU3A 2Y2MA 1AIWA 3L26A 2Y3CA 1GPFA 4OJOA 1Z70X 2AIIX 1H0GA 2HI8X 1Y1IX 2Y2PA 1O6IA 2HIBX 1Y1FX 1GXDA 1W1TA 2Y2JA 4HMEA 2JE5A 2IOUA 2XD1A 3M7PA 1E88A 3HONA 1Y1GX 2Y2OA 2FFFB 2AIJX 1YUEA 3L27A 3L25A 1W1YA 4NYYA 4IJFA 4IJEA 4QNLA 3WD1A 4NYUA 4Z2JA 1QO6A 2Y2LA 4OJ5A 1E8BA 1YU0A 1E6ZA 4HMDA 1Y1EX 1OGBA 1Y1JX 1CXWA 1W1PA 4IBBA 4OJPA 4GH9A 4IBFA 4TX8A 3WD4A 3N3FA 3MQLA 4NZ3A 3KS4A 2JCHA 4MB5A 4GHLA 1J7MA 1UR9A 1OGGA 4NZ1A 1E6RA 2D49A 4LG2A
chains in the Genus database with same CATH topology
4IBDA 2Q17A 2AFTX 3HSHA 3FKEA 3WX7A 4IBCA 2Y2GA 1YU4A 4GHAA 4NZ5A 4OUIA 4NY2A 4OJLA 1Y4JA 3L2AA 2BG1A 2Y2HA 1YU1A 1Y1HX 4IBIA 4IBJA 2Y2QA 2Y2KA 2Y2NA 1YU2A 4IBGA 4OJ6A 3L29A 4NZ4A 2AIKX 4IBKA 5BPVA 2UWXA 3KS8A 2Y2IA 2XD5A 4IBEA 3L28A 1YU3A 2Y2MA 3L26A 2Y3CA 4OJOA 1Z70X 2AIIX 2HI8X 1Y1IX 2Y2PA 2HIBX 1Y1FX 2Y2JA 2JE5A 2IOUA 2XD1A 3HONA 1Y1GX 2Y2OA 2FFFB 2AIJX 1YUEA 3L27A 3L25A 4NYYA 4IJFA 4QNLA 4IJEA 4NYUA 2Y2LA 4OJ5A 1YU0A 1Y1EX 1Y1JX 4IBBA 4OJPA 4GH9A 4IBFA 3N3FA 4NZ3A 3KS4A 2JCHA 4GHLA 4NZ1A 4LG2A 2AFYX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YU3 A;  1YU0 A;  2Q17 A;  2AFT X;  1Y1E X;  1YU2 A;  2Y3C A;  1Z70 X;  1Y1J X;  2AII X;  1YU4 A;  2HI8 X;  1Y1I X;  1Y4J A;  2HIB X;  2AIK X;  1Y1F X;  2IOU A;  1Y1G X;  1YU1 A;  1Y1H X;  2AIJ X;  2AFY X; 
#chains in the Genus database with same CATH topology
 1E6N A;  4IBD A;  4Z2G A;  2Q17 A;  2AFT X;  2FN2 A;  3WD2 A;  3HSH A;  1PDC A;  3FKE A;  3WX7 A;  4IBC A;  2Y2G A;  2RTS A;  1YU4 A;  4GHA A;  4NZ5 A;  4OUI A;  4NY2 A;  4OJL A;  1E15 A;  1Y4J A;  4MB3 A;  3L2A A;  2BG1 A;  4Z2L A;  2Y2H A;  1YU1 A;  1Y1H X;  4IBI A;  4IBJ A;  2Y2Q A;  1W1V A;  2Y2K A;  2Y2N A;  1H8P A;  1CK7 A;  3WD0 A;  4MB4 A;  1YU2 A;  1L6J A;  4IBG A;  1UR8 A;  1E6P A;  4OJ6 A;  1KS0 A;  1GOI A;  2V5O A;  3L29 A;  4NZ4 A;  1EAK A;  2AIK X;  4Z2H A;  4IBK A;  4Z2K A;  5BPV A;  2UWX A;  3KS8 A;  3WD3 A;  4HMC A;  2Y2I A;  1ED7 A;  2XD5 A;  4Z2I A;  4IBE A;  3L28 A;  1H0I A;  2AFY X;  1YU3 A;  2Y2M A;  1AIW A;  3L26 A;  2Y3C A;  1GPF A;  4OJO A;  1Z70 X;  2AII X;  1H0G A;  2HI8 X;  1Y1I X;  2Y2P A;  1O6I A;  2HIB X;  1Y1F X;  1GXD A;  1W1T A;  2Y2J A;  4HME A;  2JE5 A;  2IOU A;  2XD1 A;  3M7P A;  1E88 A;  3HON A;  1Y1G X;  2Y2O A;  2FFF B;  2AIJ X;  1YUE A;  3L27 A;  3L25 A;  1W1Y A;  4NYY A;  4IJF A;  4IJE A;  4QNL A;  3WD1 A;  4NYU A;  4Z2J A;  1QO6 A;  2Y2L A;  4OJ5 A;  1E8B A;  1YU0 A;  1E6Z A;  4HMD A;  1Y1E X;  1OGB A;  1Y1J X;  1CXW A;  1W1P A;  4IBB A;  4OJP A;  4GH9 A;  4IBF A;  4TX8 A;  3WD4 A;  3N3F A;  3MQL A;  4NZ3 A;  3KS4 A;  2JCH A;  4MB5 A;  4GHL A;  1J7M A;  1UR9 A;  1OGG A;  4NZ1 A;  1E6R A;  2D49 A;  4LG2 A; 
#chains in the Genus database with same CATH homology
 4IBD A;  2Q17 A;  2AFT X;  3HSH A;  3FKE A;  3WX7 A;  4IBC A;  2Y2G A;  1YU4 A;  4GHA A;  4NZ5 A;  4OUI A;  4NY2 A;  4OJL A;  1Y4J A;  3L2A A;  2BG1 A;  2Y2H A;  1YU1 A;  1Y1H X;  4IBI A;  4IBJ A;  2Y2Q A;  2Y2K A;  2Y2N A;  1YU2 A;  4IBG A;  4OJ6 A;  3L29 A;  4NZ4 A;  2AIK X;  4IBK A;  5BPV A;  2UWX A;  3KS8 A;  2Y2I A;  2XD5 A;  4IBE A;  3L28 A;  1YU3 A;  2Y2M A;  3L26 A;  2Y3C A;  4OJO A;  1Z70 X;  2AII X;  2HI8 X;  1Y1I X;  2Y2P A;  2HIB X;  1Y1F X;  2Y2J A;  2JE5 A;  2IOU A;  2XD1 A;  3HON A;  1Y1G X;  2Y2O A;  2FFF B;  2AIJ X;  1YUE A;  3L27 A;  3L25 A;  4NYY A;  4IJF A;  4QNL A;  4IJE A;  4NYU A;  2Y2L A;  4OJ5 A;  1YU0 A;  1Y1E X;  1Y1J X;  4IBB A;  4OJP A;  4GH9 A;  4IBF A;  3N3F A;  4NZ3 A;  3KS4 A;  2JCH A;  4GHL A;  4NZ1 A;  4LG2 A;  2AFY X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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