1YU6C

Crystal structure of the subtilisin carlsberg:omtky3 complex
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Subtilisin Carlsberg
publication title Structure of the subtilisin Carlsberg-OMTKY3 complex reveals two different ovomucoid conformations.
pubmed doi rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase
total genus 12
structure length 51
sequence length 51
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
C PF07648 Kazal_2 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1yu6C00
1BUSA 2N71A 2NU4I 1CT4I 1OVOA 1OYVI 2LEOA 2GKRI 1CSOI 1Y1CA 2SGQI 1CGJI 1KMAA 1Y1BA 1PCEA 1SGQI 1TUSA 1LR9A 2SGEI 2SGPI 2KCXA 2XRCA 2WCYA 2N52A 2KMPA 3TJQA 1HJAI 1YU6C 5DAEA 1HDLA 2KMOA 2KMQA 1IW4A 3SGQI 3SEKC 2B0UC 4HGUA 5JHWC 2GKVA 3B4VC 2N17A 2QQCA 1YTPA 2QQDA 1TIHA 2KMRA 1CHOI 2JXDA 1DS3I 1CE3A 1SGNI 2NU1I 1OMTA 1N13A 3SGBI 1TBRR 1UVFA 1AN1I 1M8BA 2JZMA 1IY6A 1TGSI 1UVGA 1LR8A 1CGII 1IY5A 2SGDI 4SGBI 2SGFI 1PJUA 1PPFI 2V53A 2ARPF 2P6AC 1BMOA 1HPTA 3OVOA 3HH2C 1SGRI 1H0ZA 1SGPI 1CT0I 2M5XA 1MT1A 1LR7A 2JYYA 1SGEI 2NU0I 1TURA 2NU3I 1CT2I 4OVOA 1M8CA 1UUCA 1Z7KB 2OVOA 1SGDI 1NUBA 1R0RI 1DS2I 1OMUA 1SGYI 2ERWA 2GKTI 1TBQR 2BUSA 1FYBA 2NU2I 3QTLD 4GI3C 2F3CI
chains in the Genus database with same CATH superfamily
4MPIA 1TBNA 4B6DA 1BUSA 2CWFA 2N71A 2NU4I 1CT4I 3QWPA 1P9ZA 3UEYA 1OVOA 1V1HA 2E5RA 1MJ9A 1OYVI 4JCVE 1ULKA 2E73A 2LEOA 2GKRI 1FAQA 1KBFA 1CSOI 2J9RA 1Y1CA 2CWHA 2SGQI 2LB7A 1CGJI 1WKXA 2X3TA 1KMAA 2ORWA 1Y1BA 1RFHA 2UZ3A 1PCEA 1SGQI 3TO6A 1ULMA 1TUSA 5HQ8A 1LR9A 1P9GA 2B8TA 2SGEI 2V1CA 2DKVA 3E2IA 3UEJA 2SGPI 5FUYA 2KCXA 4UXJA 2XRCA 3UFFA 5E3RA 1WTJA 1WGCA 2QQEA 2UVOA 2WCYA 3R5BA 2N52A 2KMPA 3D00A 2OU2A 4E1RA 2GIVA 2ENZA 1MJBA 2JW6A 3OXGA 1HJAI 1YU6C 2Y0MA 5DAEA 2FNFX 1XBTA 2KMOA 3TJQA 3UOEA 3KY9A 5CCLA 3TO7A 5J8FA 5E3QA 1FARA 2KMQA 3VE5A 3GOXA 4L9MA 2L7XA 3OL0A 2W0TA 4AMLA 1IW4A 3SGQI 3SEKC 1HEVA 1X74A 2B0UC 3RU0A 3CXLA 4HGUA 5JHWC 1HDLA 2GKVA 3B4VC 2N17A 2VRWB 2QQCA 1K7UA 3QAHA 1YTPA 2GVIA 2QQDA 3BJIA 1TIHA 2KMRA 3MEKA 2JA1A 1CHOI 2JXDA 2PQ8A 3OXLA 4UXHA 1DS3I 1CE3A 1SGNI 2WVJA 1K7TA 2L8EA 1OMTA 2NU1I 1N13A 3SGBI 5CCMA 3UGIA 2ELIA 1X4SA 2N1AB 3FC3A 1TBRR 1UVFA 1AN1I 2OZUA 5EX3A 4A24A 1M8BA 3VDUA 1XX6A 1TBOA 1XA6A 2CWGA 5FUXA 2DB6A 3UGDA 3FSYA 1VDDA 5E3PA 1PTRA 2JZMA 1Y8FA 1W3SA 3R5CA 1TGSI 1UVGA 1LR8A 1IY6A 2CJSC 1CGII 1IY5A 3TOAA 2SGDI 4SGBI 2ROWA 2SGFI 2WGCA 5HI7A 2ORVA 1PJUA 1PPFI 2V53A 2ARPF 2A20A 3OXFA 2P6AC 1BMOA 1HPTA 1U5KA 2X52A 3OVOA 1NXUA 3HH2C 2J87A 1SGRI 1W4RA 1PTQA 1TOTA 5FUVA 1H0ZA 1FY7A 1SGPI 2V1CC 4UXIA 1CT0I 2YQPA 3UGLA 4DNCA 2M5XA 3FSXA 4E1PA 1MT1A 1LR7A 2JYYA 2ENNA 1KBEA 4WP4A 1SGEI 2NU0I 1TURA 2RIJA 2LUYA 2NU3I 1WGTA 1V1IA 1CT2I 2OD1A 4OVOA 1MJAA 1M8CA 1UHAA 1UUCA 2K9HA 2QQ0A 2QPOA 3PDNA 3R5AA 1Z7KB 5J8CA 2OVOA 3VDPA 5FUWA 1SGDI 1NUBA 1K7VA 2DIPA 1R0RI 1DS2I 9WGAA 3TO9A 1OMUA 1SGYI 1ULNA 2ERWA 3TOBA 1Q9BA 2GKTI 7WGAA 2RC4A 1TBQR 2BUSA 1Z2IA 2YUUA 1FYBA 3E59A 3R5DA 2NU2I 3QTLD 4FKDA 5EX0A 4GI3C 2ODDA 2F3CI 1S20A 1R79A
chains in the Genus database with same CATH topology
1TBNA 4B6DA 1BUSA 2N71A 2NU4I 1CT4I 3QWPA 3UEYA 1OVOA 1V1HA 2E5RA 1OYVI 4JCVE 2E73A 2LEOA 2GKRI 1FAQA 1KBFA 1CSOI 2J9RA 1Y1CA 2SGQI 1CGJI 1KMAA 2ORWA 1Y1BA 1RFHA 2UZ3A 1PCEA 1SGQI 1TUSA 5HQ8A 1LR9A 2B8TA 2SGEI 2V1CA 3E2IA 3UEJA 2SGPI 5FUYA 2KCXA 4UXJA 2XRCA 3UFFA 2QQEA 2WCYA 2N52A 2KMPA 3D00A 4E1RA 2ENZA 2JW6A 3TJQA 3OXGA 1HJAI 1YU6C 5DAEA 1HDLA 2FNFX 1XBTA 2KMOA 3KY9A 1FARA 2KMQA 3VE5A 3GOXA 4L9MA 2L7XA 3OL0A 2W0TA 1IW4A 3SGQI 3SEKC 1X74A 2B0UC 3RU0A 3CXLA 4HGUA 5JHWC 2GKVA 3B4VC 2N17A 2VRWB 2QQCA 1YTPA 2GVIA 2QQDA 3BJIA 1TIHA 2KMRA 3MEKA 2JA1A 1CHOI 2JXDA 4UXHA 3OXLA 1DS3I 1CE3A 1SGNI 2WVJA 2L8EA 1OMTA 2NU1I 1N13A 3SGBI 5CCMA 3UGIA 2ELIA 1X4SA 2N1AB 3FC3A 1TBRR 1UVFA 1AN1I 5EX3A 4A24A 1M8BA 3VDUA 1XX6A 1TBOA 1XA6A 5FUXA 2DB6A 3UGDA 1VDDA 1PTRA 2JZMA 1Y8FA 1W3SA 1IY6A 1TGSI 1UVGA 1LR8A 2CJSC 1CGII 1IY5A 2SGDI 4SGBI 2ROWA 2SGFI 5HI7A 2ORVA 1PJUA 1PPFI 2V53A 2ARPF 2A20A 3OXFA 2P6AC 1BMOA 1HPTA 1U5KA 3OVOA 3HH2C 2J87A 1SGRI 1W4RA 1PTQA 1TOTA 5FUVA 1H0ZA 1SGPI 2V1CC 4UXIA 1CT0I 2YQPA 3UGLA 2M5XA 4E1PA 1MT1A 1LR7A 2JYYA 2ENNA 1KBEA 1SGEI 2NU0I 1TURA 2LUYA 2NU3I 1V1IA 1CT2I 2OD1A 4OVOA 2QQ0A 1M8CA 2K9HA 1UUCA 3PDNA 2QPOA 1Z7KB 2OVOA 3VDPA 5FUWA 1SGDI 1NUBA 2DIPA 1R0RI 1DS2I 1OMUA 1SGYI 2ERWA 2GKTI 1TBQR 2BUSA 1FYBA 2YUUA 3E59A 5EX0A 2NU2I 3QTLD 4FKDA 4GI3C 2ODDA 2F3CI 5CCLA 1R79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BUS A;  2N71 A;  2NU4 I;  1CT4 I;  1OVO A;  1OYV I;  2LEO A;  2GKR I;  1CSO I;  1Y1C A;  2SGQ I;  1CGJ I;  1KMA A;  1Y1B A;  1PCE A;  1SGQ I;  1TUS A;  1LR9 A;  2SGE I;  2SGP I;  2KCX A;  2XRC A;  2WCY A;  2N52 A;  2KMP A;  3TJQ A;  1HJA I;  1YU6 C;  5DAE A;  1HDL A;  2KMO A;  2KMQ A;  1IW4 A;  3SGQ I;  3SEK C;  2B0U C;  4HGU A;  5JHW C;  2GKV A;  3B4V C;  2N17 A;  2QQC A;  1YTP A;  2QQD A;  1TIH A;  2KMR A;  1CHO I;  2JXD A;  1DS3 I;  1CE3 A;  1SGN I;  2NU1 I;  1OMT A;  1N13 A;  3SGB I;  1TBR R;  1UVF A;  1AN1 I;  1M8B A;  2JZM A;  1IY6 A;  1TGS I;  1UVG A;  1LR8 A;  1CGI I;  1IY5 A;  2SGD I;  4SGB I;  2SGF I;  1PJU A;  1PPF I;  2V53 A;  2ARP F;  2P6A C;  1BMO A;  1HPT A;  3OVO A;  3HH2 C;  1SGR I;  1H0Z A;  1SGP I;  1CT0 I;  2M5X A;  1MT1 A;  1LR7 A;  2JYY A;  1SGE I;  2NU0 I;  1TUR A;  2NU3 I;  1CT2 I;  4OVO A;  1M8C A;  1UUC A;  1Z7K B;  2OVO A;  1SGD I;  1NUB A;  1R0R I;  1DS2 I;  1OMU A;  1SGY I;  2ERW A;  2GKT I;  1TBQ R;  2BUS A;  1FYB A;  2NU2 I;  3QTL D;  4GI3 C;  2F3C I; 
#chains in the Genus database with same CATH topology
 4MPI A;  1TBN A;  4B6D A;  1BUS A;  2CWF A;  2N71 A;  2NU4 I;  1CT4 I;  3QWP A;  1P9Z A;  3UEY A;  1OVO A;  1V1H A;  2E5R A;  1MJ9 A;  1OYV I;  4JCV E;  1ULK A;  2E73 A;  2LEO A;  2GKR I;  1FAQ A;  1KBF A;  1CSO I;  2J9R A;  1Y1C A;  2CWH A;  2SGQ I;  2LB7 A;  1CGJ I;  1WKX A;  2X3T A;  1KMA A;  2ORW A;  1Y1B A;  1RFH A;  2UZ3 A;  1PCE A;  1SGQ I;  3TO6 A;  1ULM A;  1TUS A;  5HQ8 A;  1LR9 A;  1P9G A;  2B8T A;  2SGE I;  2V1C A;  2DKV A;  3E2I A;  3UEJ A;  2SGP I;  5FUY A;  2KCX A;  4UXJ A;  2XRC A;  3UFF A;  5E3R A;  1WTJ A;  1WGC A;  2QQE A;  2UVO A;  2WCY A;  3R5B A;  2N52 A;  2KMP A;  3D00 A;  2OU2 A;  4E1R A;  2GIV A;  2ENZ A;  1MJB A;  2JW6 A;  3OXG A;  1HJA I;  1YU6 C;  2Y0M A;  5DAE A;  2FNF X;  1XBT A;  2KMO A;  3TJQ A;  3UOE A;  3KY9 A;  5CCL A;  3TO7 A;  5J8F A;  5E3Q A;  1FAR A;  2KMQ A;  3VE5 A;  3GOX A;  4L9M A;  2L7X A;  3OL0 A;  2W0T A;  4AML A;  1IW4 A;  3SGQ I;  3SEK C;  1HEV A;  1X74 A;  2B0U C;  3RU0 A;  3CXL A;  4HGU A;  5JHW C;  1HDL A;  2GKV A;  3B4V C;  2N17 A;  2VRW B;  2QQC A;  1K7U A;  3QAH A;  1YTP A;  2GVI A;  2QQD A;  3BJI A;  1TIH A;  2KMR A;  3MEK A;  2JA1 A;  1CHO I;  2JXD A;  2PQ8 A;  3OXL A;  4UXH A;  1DS3 I;  1CE3 A;  1SGN I;  2WVJ A;  1K7T A;  2L8E A;  1OMT A;  2NU1 I;  1N13 A;  3SGB I;  5CCM A;  3UGI A;  2ELI A;  1X4S A;  2N1A B;  3FC3 A;  1TBR R;  1UVF A;  1AN1 I;  2OZU A;  5EX3 A;  4A24 A;  1M8B A;  3VDU A;  1XX6 A;  1TBO A;  1XA6 A;  2CWG A;  5FUX A;  2DB6 A;  3UGD A;  3FSY A;  1VDD A;  5E3P A;  1PTR A;  2JZM A;  1Y8F A;  1W3S A;  3R5C A;  1TGS I;  1UVG A;  1LR8 A;  1IY6 A;  2CJS C;  1CGI I;  1IY5 A;  3TOA A;  2SGD I;  4SGB I;  2ROW A;  2SGF I;  2WGC A;  5HI7 A;  2ORV A;  1PJU A;  1PPF I;  2V53 A;  2ARP F;  2A20 A;  3OXF A;  2P6A C;  1BMO A;  1HPT A;  1U5K A;  2X52 A;  3OVO A;  1NXU A;  3HH2 C;  2J87 A;  1SGR I;  1W4R A;  1PTQ A;  1TOT A;  5FUV A;  1H0Z A;  1FY7 A;  1SGP I;  2V1C C;  4UXI A;  1CT0 I;  2YQP A;  3UGL A;  4DNC A;  2M5X A;  3FSX A;  4E1P A;  1MT1 A;  1LR7 A;  2JYY A;  2ENN A;  1KBE A;  4WP4 A;  1SGE I;  2NU0 I;  1TUR A;  2RIJ A;  2LUY A;  2NU3 I;  1WGT A;  1V1I A;  1CT2 I;  2OD1 A;  4OVO A;  1MJA A;  1M8C A;  1UHA A;  1UUC A;  2K9H A;  2QQ0 A;  2QPO A;  3PDN A;  3R5A A;  1Z7K B;  5J8C A;  2OVO A;  3VDP A;  5FUW A;  1SGD I;  1NUB A;  1K7V A;  2DIP A;  1R0R I;  1DS2 I;  9WGA A;  3TO9 A;  1OMU A;  1SGY I;  1ULN A;  2ERW A;  3TOB A;  1Q9B A;  2GKT I;  7WGA A;  2RC4 A;  1TBQ R;  2BUS A;  1Z2I A;  2YUU A;  1FYB A;  3E59 A;  3R5D A;  2NU2 I;  3QTL D;  4FKD A;  5EX0 A;  4GI3 C;  2ODD A;  2F3C I;  1S20 A;  1R79 A; 
#chains in the Genus database with same CATH homology
 1TBN A;  4B6D A;  1BUS A;  2N71 A;  2NU4 I;  1CT4 I;  3QWP A;  3UEY A;  1OVO A;  1V1H A;  2E5R A;  1OYV I;  4JCV E;  2E73 A;  2LEO A;  2GKR I;  1FAQ A;  1KBF A;  1CSO I;  2J9R A;  1Y1C A;  2SGQ I;  1CGJ I;  1KMA A;  2ORW A;  1Y1B A;  1RFH A;  2UZ3 A;  1PCE A;  1SGQ I;  1TUS A;  5HQ8 A;  1LR9 A;  2B8T A;  2SGE I;  2V1C A;  3E2I A;  3UEJ A;  2SGP I;  5FUY A;  2KCX A;  4UXJ A;  2XRC A;  3UFF A;  2QQE A;  2WCY A;  2N52 A;  2KMP A;  3D00 A;  4E1R A;  2ENZ A;  2JW6 A;  3TJQ A;  3OXG A;  1HJA I;  1YU6 C;  5DAE A;  1HDL A;  2FNF X;  1XBT A;  2KMO A;  3KY9 A;  1FAR A;  2KMQ A;  3VE5 A;  3GOX A;  4L9M A;  2L7X A;  3OL0 A;  2W0T A;  1IW4 A;  3SGQ I;  3SEK C;  1X74 A;  2B0U C;  3RU0 A;  3CXL A;  4HGU A;  5JHW C;  2GKV A;  3B4V C;  2N17 A;  2VRW B;  2QQC A;  1YTP A;  2GVI A;  2QQD A;  3BJI A;  1TIH A;  2KMR A;  3MEK A;  2JA1 A;  1CHO I;  2JXD A;  4UXH A;  3OXL A;  1DS3 I;  1CE3 A;  1SGN I;  2WVJ A;  2L8E A;  1OMT A;  2NU1 I;  1N13 A;  3SGB I;  5CCM A;  3UGI A;  2ELI A;  1X4S A;  2N1A B;  3FC3 A;  1TBR R;  1UVF A;  1AN1 I;  5EX3 A;  4A24 A;  1M8B A;  3VDU A;  1XX6 A;  1TBO A;  1XA6 A;  5FUX A;  2DB6 A;  3UGD A;  1VDD A;  1PTR A;  2JZM A;  1Y8F A;  1W3S A;  1IY6 A;  1TGS I;  1UVG A;  1LR8 A;  2CJS C;  1CGI I;  1IY5 A;  2SGD I;  4SGB I;  2ROW A;  2SGF I;  5HI7 A;  2ORV A;  1PJU A;  1PPF I;  2V53 A;  2ARP F;  2A20 A;  3OXF A;  2P6A C;  1BMO A;  1HPT A;  1U5K A;  3OVO A;  3HH2 C;  2J87 A;  1SGR I;  1W4R A;  1PTQ A;  1TOT A;  5FUV A;  1H0Z A;  1SGP I;  2V1C C;  4UXI A;  1CT0 I;  2YQP A;  3UGL A;  2M5X A;  4E1P A;  1MT1 A;  1LR7 A;  2JYY A;  2ENN A;  1KBE A;  1SGE I;  2NU0 I;  1TUR A;  2LUY A;  2NU3 I;  1V1I A;  1CT2 I;  2OD1 A;  4OVO A;  2QQ0 A;  1M8C A;  2K9H A;  1UUC A;  3PDN A;  2QPO A;  1Z7K B;  2OVO A;  3VDP A;  5FUW A;  1SGD I;  1NUB A;  2DIP A;  1R0R I;  1DS2 I;  1OMU A;  1SGY I;  2ERW A;  2GKT I;  1TBQ R;  2BUS A;  1FYB A;  2YUU A;  3E59 A;  5EX0 A;  2NU2 I;  3QTL D;  4FKD A;  4GI3 C;  2ODD A;  2F3C I;  5CCL A;  1R79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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