1YV8A

Solution structure of crambin in acetone/water mixed solvent
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
45
structure length
45
Chain Sequence
TCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Crambin
publication title Three-Dimensional Structure of the Water-Insoluble Protein Crambin in Dodecylphosphocholine Micelles and Its Minimal Solvent-Exposed Surface
pubmed doi rcsb
source organism Crambe hispanica
total genus 8
structure length 45
sequence length 45
ec nomenclature
pdb deposition date 2005-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1yv8A00
3C8PA 4FC1A 1EJGA 1JMNA 1NBLA 1CNRA 2EYBA 2EYDA 3U7TA 1YV8A 1CCMA 1CRNA 1ED0A 1JXUA 1JXYA 2FD9A 3UE7B 3SZSA 1CBNA 1BHPA 1ORLA 1CXRA 2EYAA 2V9BA 1OKHA 1JMPA 1JXWA 1AB1A 2FD7A 1JXXA 1WUWA 2PLHA 1CCNA 1YVAA 3NIRA 1JXTA 2EYCA
chains in the Genus database with same CATH superfamily
3C8PA 1H5WA 4FC1A 1EJGA 1IJGA 1JMNA 1NBLA 1CNRA 2EYBA 2EYDA 3U7TA 1YV8A 2EYCA 1CCMA 1CRNA 1ED0A 1JXUA 1JXYA 2FD9A 3UE7B 3SZSA 1CBNA 1BHPA 1ORLA 1CXRA 2EYAA 2V9BA 1OKHA 1FOUA 1JXWA 1JMPA 1AB1A 2FD7A 1JXXA 1WUWA 2PLHA 1CCNA 1YVAA 3NIRA 1JXTA 1JNBA
chains in the Genus database with same CATH topology
3C8PA 4FC1A 1EJGA 1JMNA 1NBLA 1CNRA 2EYBA 2EYDA 3U7TA 1YV8A 1CCMA 1CRNA 1ED0A 1JXUA 1JXYA 2FD9A 3UE7B 3SZSA 1CBNA 1BHPA 1ORLA 1CXRA 2EYAA 2V9BA 1OKHA 1JMPA 1JXWA 1AB1A 2FD7A 1JXXA 1WUWA 2PLHA 1CCNA 1YVAA 3NIRA 1JXTA 2EYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C8P A;  4FC1 A;  1EJG A;  1JMN A;  1NBL A;  1CNR A;  2EYB A;  2EYD A;  3U7T A;  1YV8 A;  1CCM A;  1CRN A;  1ED0 A;  1JXU A;  1JXY A;  2FD9 A;  3UE7 B;  3SZS A;  1CBN A;  1BHP A;  1ORL A;  1CXR A;  2EYA A;  2V9B A;  1OKH A;  1JMP A;  1JXW A;  1AB1 A;  2FD7 A;  1JXX A;  1WUW A;  2PLH A;  1CCN A;  1YVA A;  3NIR A;  1JXT A;  2EYC A; 
#chains in the Genus database with same CATH topology
 3C8P A;  1H5W A;  4FC1 A;  1EJG A;  1IJG A;  1JMN A;  1NBL A;  1CNR A;  2EYB A;  2EYD A;  3U7T A;  1YV8 A;  2EYC A;  1CCM A;  1CRN A;  1ED0 A;  1JXU A;  1JXY A;  2FD9 A;  3UE7 B;  3SZS A;  1CBN A;  1BHP A;  1ORL A;  1CXR A;  2EYA A;  2V9B A;  1OKH A;  1FOU A;  1JXW A;  1JMP A;  1AB1 A;  2FD7 A;  1JXX A;  1WUW A;  2PLH A;  1CCN A;  1YVA A;  3NIR A;  1JXT A;  1JNB A; 
#chains in the Genus database with same CATH homology
 3C8P A;  4FC1 A;  1EJG A;  1JMN A;  1NBL A;  1CNR A;  2EYB A;  2EYD A;  3U7T A;  1YV8 A;  1CCM A;  1CRN A;  1ED0 A;  1JXU A;  1JXY A;  2FD9 A;  3UE7 B;  3SZS A;  1CBN A;  1BHP A;  1ORL A;  1CXR A;  2EYA A;  2V9B A;  1OKH A;  1JMP A;  1JXW A;  1AB1 A;  2FD7 A;  1JXX A;  1WUW A;  2PLH A;  1CCN A;  1YVA A;  3NIR A;  1JXT A;  2EYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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