1YVNG

The yeast actin val 159 asn mutant complex with human gelsolin segment 1.
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords PROTEIN (ACTIN)
publication title Crystal structure of yeast actin V159N mutant
rcsb
source organism Homo sapiens
total genus 39
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1999-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1yvnG00
3FFNA 2NUTA 1P8XA 3EH1A 2LLFA 4KEDA 1RGIG 2LJ8A 2L72A 2W0IA 3A5OS 1J72A 1M4JA 2FH4A 1VKKA 1YVNG 3EGXB 1YAGG 3TU5B 1VFQA 3DAWB 1SVQA 2FGHA 3A5MS 3L50A 1WFSA 1AHQA 1ESVS 1TMWA 2NUTB 4PKHB 3CJCG 3A5NS 4JD2H 5IVUA 2FH2A 2MOTA 1DEJS 5KYYA 2XFAA 2FF3A 2LXXA 3EFOA 4KEEA 1HQZ1 4Z94G 1M2OA 2QTVA 2VACA 4BEX1 3Q2BA 2NUPA 3EG9A 2FH3A 3CJBG 1JHWA 1TVJA 5DD2A 4KEFA 1P8ZG 1M2VA 5KYWB 3CIPG 3A5LS 4CBWG 4LIZA 1T44G 4CBUG 2VILA 3EH2A 5KYYB 1MDUA 1PCXA 5KYXA 3EFOB 3FFKA 2FH1A 4S10C 1D0NA 5KYNA 2XF1A 2NUPB 3EG9B 3EGDA 1SVRA 1T3XA 1KCQA 5KYUA 1WM4A 1M2VB 1NLVG 5KYXB 4PKGG 1C0GS 1Q8XA 1F7SA 3FG6A 1X67A 2FF6G 1AK6A 1CFYA 2MP4A 5FAEA 5FAFA 1COFA 1QPVA 5A1MA 1UDMA 2D8BA 1WNJA 1NPHA 1T3YA 2KVKA 2MV2A 1CNUA 5HVKB 1EQYS 1PD1A 1V6FA 3EGDB 4CBXG 5KYUB 5L6WC 2VIKA 4PKIG 1SVYA 1C0FS 1D4XG 1AK7A 3EGXA 5HVKD 1NMDG 2I2QA 2HD7A 1H1VG 1PD0A 3FG7A 5KYWA 1Q8GA 1T2LA 3CI5G 1NM1G
chains in the Genus database with same CATH superfamily
3FFNA 2NUTA 1P8XA 3EH1A 2LLFA 4KEDA 1RGIG 2LJ8A 2L72A 2W0IA 3A5OS 1J72A 1M4JA 2FH4A 1VKKA 1YVNG 3EGXB 1YAGG 3TU5B 1VFQA 3DAWB 1SVQA 2FGHA 3A5MS 3L50A 1WFSA 1AHQA 1ESVS 1TMWA 2NUTB 4PKHB 3CJCG 3A5NS 4JD2H 5IVUA 2FH2A 2MOTA 1DEJS 5KYYA 2XFAA 2FF3A 2LXXA 3EFOA 4KEEA 1HQZ1 4Z94G 1M2OA 2QTVA 2VACA 4BEX1 3Q2BA 2NUPA 3EG9A 2FH3A 3CJBG 1JHWA 1TVJA 5DD2A 4KEFA 1P8ZG 1M2VA 5KYWB 3CIPG 3A5LS 4CBWG 4LIZA 1T44G 4CBUG 2VILA 3DA7A 3EH2A 5KYYB 1MDUA 1PCXA 5KYXA 3EFOB 3FFKA 2FH1A 4S10C 1D0NA 5KYNA 2XF1A 2NUPB 3EG9B 3EGDA 1SVRA 1T3XA 1KCQA 5KYUA 1WM4A 1M2VB 1NLVG 5KYXB 4PKGG 1C0GS 1Q8XA 1F7SA 3FG6A 1X67A 2FF6G 1AK6A 1CFYA 2MP4A 5FAEA 5FAFA 1COFA 1QPVA 5A1MA 1UDMA 2D8BA 1WNJA 1NPHA 1T3YA 2KVKA 2MV2A 1CNUA 5HVKB 1EQYS 1PD1A 1V6FA 3EGDB 4CBXG 5KYUB 5L6WC 2VIKA 4PKIG 1SVYA 1C0FS 1D4XG 1AK7A 3EGXA 5HVKD 1NMDG 2I2QA 2HD7A 1H1VG 1PD0A 3FG7A 5KYWA 1Q8GA 1T2LA 3CI5G 1NM1G
chains in the Genus database with same CATH topology
3FFNA 2NUTA 1P8XA 3EH1A 2LLFA 4KEDA 1RGIG 2LJ8A 2L72A 2W0IA 3A5OS 1J72A 1M4JA 2FH4A 1VKKA 1YVNG 3EGXB 1YAGG 3TU5B 1VFQA 3DAWB 1SVQA 2FGHA 3A5MS 3L50A 1WFSA 1AHQA 1ESVS 1TMWA 2NUTB 4PKHB 3CJCG 3A5NS 4JD2H 5IVUA 2FH2A 2MOTA 1DEJS 5KYYA 2XFAA 2FF3A 2LXXA 3EFOA 4KEEA 1HQZ1 4Z94G 1M2OA 2QTVA 2VACA 4BEX1 3Q2BA 2NUPA 3EG9A 2FH3A 3CJBG 1JHWA 1TVJA 5DD2A 4KEFA 1P8ZG 1M2VA 5KYWB 3CIPG 3A5LS 4CBWG 4LIZA 1T44G 4CBUG 2VILA 3DA7A 3EH2A 5KYYB 1MDUA 1PCXA 5KYXA 3EFOB 3FFKA 2FH1A 4S10C 1D0NA 5KYNA 2XF1A 2NUPB 3EG9B 3EGDA 1SVRA 1T3XA 1KCQA 5KYUA 1WM4A 1M2VB 1NLVG 5KYXB 4PKGG 1C0GS 1Q8XA 1F7SA 3FG6A 1X67A 2FF6G 1AK6A 1CFYA 2MP4A 5FAEA 5FAFA 1COFA 1QPVA 5A1MA 1UDMA 2D8BA 1WNJA 1NPHA 1T3YA 2KVKA 2MV2A 1CNUA 5HVKB 1EQYS 1PD1A 1V6FA 3EGDB 4CBXG 5KYUB 5L6WC 2VIKA 4PKIG 1SVYA 1C0FS 1D4XG 1AK7A 3EGXA 5HVKD 1NMDG 2I2QA 2HD7A 1H1VG 1PD0A 3FG7A 5KYWA 1Q8GA 1T2LA 3CI5G 1NM1G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FFN A;  2NUT A;  1P8X A;  3EH1 A;  2LLF A;  4KED A;  1RGI G;  2LJ8 A;  2L72 A;  2W0I A;  3A5O S;  1J72 A;  1M4J A;  2FH4 A;  1VKK A;  1YVN G;  3EGX B;  1YAG G;  3TU5 B;  1VFQ A;  3DAW B;  1SVQ A;  2FGH A;  3A5M S;  3L50 A;  1WFS A;  1AHQ A;  1ESV S;  1TMW A;  2NUT B;  4PKH B;  3CJC G;  3A5N S;  4JD2 H;  5IVU A;  2FH2 A;  2MOT A;  1DEJ S;  5KYY A;  2XFA A;  2FF3 A;  2LXX A;  3EFO A;  4KEE A;  1HQZ 1;  4Z94 G;  1M2O A;  2QTV A;  2VAC A;  4BEX 1;  3Q2B A;  2NUP A;  3EG9 A;  2FH3 A;  3CJB G;  1JHW A;  1TVJ A;  5DD2 A;  4KEF A;  1P8Z G;  1M2V A;  5KYW B;  3CIP G;  3A5L S;  4CBW G;  4LIZ A;  1T44 G;  4CBU G;  2VIL A;  3EH2 A;  5KYY B;  1MDU A;  1PCX A;  5KYX A;  3EFO B;  3FFK A;  2FH1 A;  4S10 C;  1D0N A;  5KYN A;  2XF1 A;  2NUP B;  3EG9 B;  3EGD A;  1SVR A;  1T3X A;  1KCQ A;  5KYU A;  1WM4 A;  1M2V B;  1NLV G;  5KYX B;  4PKG G;  1C0G S;  1Q8X A;  1F7S A;  3FG6 A;  1X67 A;  2FF6 G;  1AK6 A;  1CFY A;  2MP4 A;  5FAE A;  5FAF A;  1COF A;  1QPV A;  5A1M A;  1UDM A;  2D8B A;  1WNJ A;  1NPH A;  1T3Y A;  2KVK A;  2MV2 A;  1CNU A;  5HVK B;  1EQY S;  1PD1 A;  1V6F A;  3EGD B;  4CBX G;  5KYU B;  5L6W C;  2VIK A;  4PKI G;  1SVY A;  1C0F S;  1D4X G;  1AK7 A;  3EGX A;  5HVK D;  1NMD G;  2I2Q A;  2HD7 A;  1H1V G;  1PD0 A;  3FG7 A;  5KYW A;  1Q8G A;  1T2L A;  3CI5 G;  1NM1 G; 
#chains in the Genus database with same CATH topology
 3FFN A;  2NUT A;  1P8X A;  3EH1 A;  2LLF A;  4KED A;  1RGI G;  2LJ8 A;  2L72 A;  2W0I A;  3A5O S;  1J72 A;  1M4J A;  2FH4 A;  1VKK A;  1YVN G;  3EGX B;  1YAG G;  3TU5 B;  1VFQ A;  3DAW B;  1SVQ A;  2FGH A;  3A5M S;  3L50 A;  1WFS A;  1AHQ A;  1ESV S;  1TMW A;  2NUT B;  4PKH B;  3CJC G;  3A5N S;  4JD2 H;  5IVU A;  2FH2 A;  2MOT A;  1DEJ S;  5KYY A;  2XFA A;  2FF3 A;  2LXX A;  3EFO A;  4KEE A;  1HQZ 1;  4Z94 G;  1M2O A;  2QTV A;  2VAC A;  4BEX 1;  3Q2B A;  2NUP A;  3EG9 A;  2FH3 A;  3CJB G;  1JHW A;  1TVJ A;  5DD2 A;  4KEF A;  1P8Z G;  1M2V A;  5KYW B;  3CIP G;  3A5L S;  4CBW G;  4LIZ A;  1T44 G;  4CBU G;  2VIL A;  3DA7 A;  3EH2 A;  5KYY B;  1MDU A;  1PCX A;  5KYX A;  3EFO B;  3FFK A;  2FH1 A;  4S10 C;  1D0N A;  5KYN A;  2XF1 A;  2NUP B;  3EG9 B;  3EGD A;  1SVR A;  1T3X A;  1KCQ A;  5KYU A;  1WM4 A;  1M2V B;  1NLV G;  5KYX B;  4PKG G;  1C0G S;  1Q8X A;  1F7S A;  3FG6 A;  1X67 A;  2FF6 G;  1AK6 A;  1CFY A;  2MP4 A;  5FAE A;  5FAF A;  1COF A;  1QPV A;  5A1M A;  1UDM A;  2D8B A;  1WNJ A;  1NPH A;  1T3Y A;  2KVK A;  2MV2 A;  1CNU A;  5HVK B;  1EQY S;  1PD1 A;  1V6F A;  3EGD B;  4CBX G;  5KYU B;  5L6W C;  2VIK A;  4PKI G;  1SVY A;  1C0F S;  1D4X G;  1AK7 A;  3EGX A;  5HVK D;  1NMD G;  2I2Q A;  2HD7 A;  1H1V G;  1PD0 A;  3FG7 A;  5KYW A;  1Q8G A;  1T2L A;  3CI5 G;  1NM1 G; 
#chains in the Genus database with same CATH homology
 3FFN A;  2NUT A;  1P8X A;  3EH1 A;  2LLF A;  4KED A;  1RGI G;  2LJ8 A;  2L72 A;  2W0I A;  3A5O S;  1J72 A;  1M4J A;  2FH4 A;  1VKK A;  1YVN G;  3EGX B;  1YAG G;  3TU5 B;  1VFQ A;  3DAW B;  1SVQ A;  2FGH A;  3A5M S;  3L50 A;  1WFS A;  1AHQ A;  1ESV S;  1TMW A;  2NUT B;  4PKH B;  3CJC G;  3A5N S;  4JD2 H;  5IVU A;  2FH2 A;  2MOT A;  1DEJ S;  5KYY A;  2XFA A;  2FF3 A;  2LXX A;  3EFO A;  4KEE A;  1HQZ 1;  4Z94 G;  1M2O A;  2QTV A;  2VAC A;  4BEX 1;  3Q2B A;  2NUP A;  3EG9 A;  2FH3 A;  3CJB G;  1JHW A;  1TVJ A;  5DD2 A;  4KEF A;  1P8Z G;  1M2V A;  5KYW B;  3CIP G;  3A5L S;  4CBW G;  4LIZ A;  1T44 G;  4CBU G;  2VIL A;  3DA7 A;  3EH2 A;  5KYY B;  1MDU A;  1PCX A;  5KYX A;  3EFO B;  3FFK A;  2FH1 A;  4S10 C;  1D0N A;  5KYN A;  2XF1 A;  2NUP B;  3EG9 B;  3EGD A;  1SVR A;  1T3X A;  1KCQ A;  5KYU A;  1WM4 A;  1M2V B;  1NLV G;  5KYX B;  4PKG G;  1C0G S;  1Q8X A;  1F7S A;  3FG6 A;  1X67 A;  2FF6 G;  1AK6 A;  1CFY A;  2MP4 A;  5FAE A;  5FAF A;  1COF A;  1QPV A;  5A1M A;  1UDM A;  2D8B A;  1WNJ A;  1NPH A;  1T3Y A;  2KVK A;  2MV2 A;  1CNU A;  5HVK B;  1EQY S;  1PD1 A;  1V6F A;  3EGD B;  4CBX G;  5KYU B;  5L6W C;  2VIK A;  4PKI G;  1SVY A;  1C0F S;  1D4X G;  1AK7 A;  3EGX A;  5HVK D;  1NMD G;  2I2Q A;  2HD7 A;  1H1V G;  1PD0 A;  3FG7 A;  5KYW A;  1Q8G A;  1T2L A;  3CI5 G;  1NM1 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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