1Z2FA

Solution structure of cfafp-501
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
121
structure length
121
Chain Sequence
DGTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of an Antifreeze Protein CfAFP-501 from Choristoneura fumiferana
pubmed doi rcsb
molecule tags Antifreeze protein
source organism Choristoneura fumiferana
molecule keywords Antifreeze Protein Isoform 501
total genus 58
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2005-03-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.10.20 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase; domain 1 Insect antifreeze protein 1z2fA00
1M8NA 1EWWA 3GQAA 3GQ8A 1N4IA 1Z2FA 3GQ7A 3GQ9A 1L0SA 3SUCA
chains in the Genus database with same CATH superfamily
3P47A 1XATA 3D98A 4M99A 3R3RA 1LXAA 2IU8A 4R7PA 3FSBA 5F42A 3ST8A 5L6SA 2V0KA 3T57A 1QQ0A 3OH1A 4G87A 3R8YA 3BSSA 3EH0A 3BSYA 3R1WA 1G95A 3F1XA 2QIAA 3IGJA 3V4EA 2WLEA 2XATA 3BFPA 4KQLA 3GUEA 2V0HA 4EA9A 1TDTA 4IHFA 4N6AA 3R5CA 1HV9A 4G3QA 1KK5A 2W0VA 4HZCA 4AAWA 1FWYA 3GOSA 1YP4A 3OUPA 4HUSA 3OH3A 2V0JA 4E6UA 3GQAA 3TWDA 2WLFA 1Z90A 4IHHA 2NPOA 1SSTA 2JF2A 2IUAA 2OEFA 1HM0A 3OGZA 3TK8A 4N6BA 4J09A 3R0SA 3R3IA 1M8NA 2WLDA 4M2BA 4EABA 3EG4A 2QIVX 3VBJA 1KRRA 3DJ4A 1V67A 4E6TA 3FOQA 4EA8A 3VBNA 3VBKA 1THJA 3MC4A 3OW5A 5E3RA 4G3SA 3ECTA 3TV0A 1N4IA 3DK5A 2RIJA 5AFUV 2JF3A 3HSQA 4EAAA 2QKXA 5U2KA 2OEGA 1G97A 2TDTA 1Z2FA 1KQAA 3OTZA 3OH2A 4FCEA 3VBMA 4E75A 3VBPA 1V3WA 1MR9A 2AQ9A 3C8VA 4R37A 2V0IA 3NZ2A 4R36A 2IC7A 1HM9A 5L6VA 2V0LA 3I3XA 4M28A 3D8VA 4KNXA 4EGGA 1L0SA 1J2ZA 2ICXA 1XHDA 4MYOA 5DEMA 4AA7A 4HCQA 1OCXA 2VD4A 2I5KA 3VBLA 4M98A 2WLGA 1YP3A 1KGQA 3Q1XA 3TDTA 3R5DA 5DG3A 2OI6A 3BSWA 3I3AA 3PMOA 4M9CA 3OH0A 2IU9A 3OTMA 2ICYA 3KWEA 4H7OA 5ADXV 1KRUA 4M2AA 5ADXU 1FXJA 2VHEA 3OU9A 3TIOA 3JQYA 1S80A 2GGOA 3MQHA 3R5AA 3VBIA 1KHRA 4MFGA 4EQYA 3HJJA 1SSMA 1QRMA 3CJ8A 3DHOA 3R2WA 1KK6A 3GQ7A 3R5BA 4KPZA 3SRTA 4MZUA 5E3PA 2OI5A 1KRVA 5AFUU 3VNPA 4EA7A 1EWWA 2GGQA 4J18A 4KPXA 1MRLA 3BRKX 4KNRA 1MR7A 3FWWA 3SUCA 3FTTA 1T3DA 1YP2A 3TISA 3FSYA 4K6RA 1SSQA 1KGTA 3OH4A 1QRGA 4E79A 3KWDA 4IHGA 4HURA 3FSXA 1QREA 2OI7A 3GVDA 3KWCA 4ISXA 3MQGA 1HM8A 5E3QA 1QRLA 4DCLA 3GQ8A 3FSCA 5DEPA 4E1KA 3GQ9A 1KK4A 4G3PA 3EEVA 3SPTA 4AC3A 3P1BA 4HZDA 2Q4JA 4N69A 3BXYA 4N27A 2W0WA 3IXCA 1QRFA 3FS8A 2P2OA 2WLCA 2FKOA
chains in the Genus database with same CATH topology
1L1IA 1M8NA 1EWWA 1EZGA 3GQAA 1Z2FA 1N4IA 3GQ8A 3GQ7A 3GQ9A 1L0SA 3SUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M8N A;  1EWW A;  3GQA A;  3GQ8 A;  1N4I A;  1Z2F A;  3GQ7 A;  3GQ9 A;  1L0S A;  3SUC A; 
#chains in the Genus database with same CATH topology
 3P47 A;  1XAT A;  3D98 A;  4M99 A;  3R3R A;  1LXA A;  2IU8 A;  4R7P A;  3FSB A;  5F42 A;  3ST8 A;  5L6S A;  2V0K A;  3T57 A;  1QQ0 A;  3OH1 A;  4G87 A;  3R8Y A;  3BSS A;  3EH0 A;  3BSY A;  3R1W A;  1G95 A;  3F1X A;  2QIA A;  3IGJ A;  3V4E A;  2WLE A;  2XAT A;  3BFP A;  4KQL A;  3GUE A;  2V0H A;  4EA9 A;  1TDT A;  4IHF A;  4N6A A;  3R5C A;  1HV9 A;  4G3Q A;  1KK5 A;  2W0V A;  4HZC A;  4AAW A;  1FWY A;  3GOS A;  1YP4 A;  3OUP A;  4HUS A;  3OH3 A;  2V0J A;  4E6U A;  3GQA A;  3TWD A;  2WLF A;  1Z90 A;  4IHH A;  2NPO A;  1SST A;  2JF2 A;  2IUA A;  2OEF A;  1HM0 A;  3OGZ A;  3TK8 A;  4N6B A;  4J09 A;  3R0S A;  3R3I A;  1M8N A;  2WLD A;  4M2B A;  4EAB A;  3EG4 A;  2QIV X;  3VBJ A;  1KRR A;  3DJ4 A;  1V67 A;  4E6T A;  3FOQ A;  4EA8 A;  3VBN A;  3VBK A;  1THJ A;  3MC4 A;  3OW5 A;  5E3R A;  4G3S A;  3ECT A;  3TV0 A;  1N4I A;  3DK5 A;  2RIJ A;  5AFU V;  2JF3 A;  3HSQ A;  4EAA A;  2QKX A;  5U2K A;  2OEG A;  1G97 A;  2TDT A;  1Z2F A;  1KQA A;  3OTZ A;  3OH2 A;  4FCE A;  3VBM A;  4E75 A;  3VBP A;  1V3W A;  1MR9 A;  2AQ9 A;  3C8V A;  4R37 A;  2V0I A;  3NZ2 A;  4R36 A;  2IC7 A;  1HM9 A;  5L6V A;  2V0L A;  3I3X A;  4M28 A;  3D8V A;  4KNX A;  4EGG A;  1L0S A;  1J2Z A;  2ICX A;  1XHD A;  4MYO A;  5DEM A;  4AA7 A;  4HCQ A;  1OCX A;  2VD4 A;  2I5K A;  3VBL A;  4M98 A;  2WLG A;  1YP3 A;  1KGQ A;  3Q1X A;  3TDT A;  3R5D A;  5DG3 A;  2OI6 A;  3BSW A;  3I3A A;  3PMO A;  4M9C A;  3OH0 A;  2IU9 A;  3OTM A;  2ICY A;  3KWE A;  4H7O A;  5ADX V;  1KRU A;  4M2A A;  5ADX U;  1FXJ A;  2VHE A;  3OU9 A;  3TIO A;  3JQY A;  1S80 A;  2GGO A;  3MQH A;  3R5A A;  3VBI A;  1KHR A;  4MFG A;  4EQY A;  3HJJ A;  1SSM A;  1QRM A;  3CJ8 A;  3DHO A;  3R2W A;  1KK6 A;  3GQ7 A;  3R5B A;  4KPZ A;  3SRT A;  4MZU A;  5E3P A;  2OI5 A;  1KRV A;  5AFU U;  3VNP A;  4EA7 A;  1EWW A;  2GGQ A;  4J18 A;  4KPX A;  1MRL A;  3BRK X;  4KNR A;  1MR7 A;  3FWW A;  3SUC A;  3FTT A;  1T3D A;  1YP2 A;  3TIS A;  3FSY A;  4K6R A;  1SSQ A;  1KGT A;  3OH4 A;  1QRG A;  4E79 A;  3KWD A;  4IHG A;  4HUR A;  3FSX A;  1QRE A;  2OI7 A;  3GVD A;  3KWC A;  4ISX A;  3MQG A;  1HM8 A;  5E3Q A;  1QRL A;  4DCL A;  3GQ8 A;  3FSC A;  5DEP A;  4E1K A;  3GQ9 A;  1KK4 A;  4G3P A;  3EEV A;  3SPT A;  4AC3 A;  3P1B A;  4HZD A;  2Q4J A;  4N69 A;  3BXY A;  4N27 A;  2W0W A;  3IXC A;  1QRF A;  3FS8 A;  2P2O A;  2WLC A;  2FKO A; 
#chains in the Genus database with same CATH homology
 1L1I A;  1M8N A;  1EWW A;  1EZG A;  3GQA A;  1Z2F A;  1N4I A;  3GQ8 A;  3GQ7 A;  3GQ9 A;  1L0S A;  3SUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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