1Z3AA

Crystal structure of trna adenosine deaminase tada from escherichia coli
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
156
structure length
156
Chain Sequence
SEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
molecule keywords tRNA-specific adenosine deaminase
total genus 47
structure length 156
sequence length 156
chains with identical sequence B
ec nomenclature ec 3.5.4.33: tRNA(adenine(34)) deaminase.
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1z3aA00
2O3KA 5M52C 4F3WA 3OCQA 1UWZA 2RPZA 4LCOA 4BGDC 2HXVA 4KITC 2Z3IA 4HRQA 4MSJA 1UX0A 2KCQA 2O7PA 4ZFTA 3E1UA 5CW6A 4OCNA 4MSDA 2B3ZA 2D30A 5GAOA 4OCMB 3EX8A 4NQLA 1ALNA 4HRWA 4K1RA 3ZEFB 1R5TA 4LCPA 4ZD4A 3G8QA 4ILGC 4WIGA 4LD4A 1VQ2A 3MPZA 4LD2A 5C2OA 4O8XA 4OWPA 2NX8A 2P87A 4JXEA 4ZFRA 4WIFA 4LCNA 1AF2A 3IJFX 4OCLB 1Z3AA 1YSDA 4O8YB 3R2NA 1ZABA 3ZPGA 2HVVA 2Z3GA 1JTKA 3RZUA 1CTUA 1OX7A 2FR6A 2NYTA 2O95A 2P8RA 4G3MA 4OWPB 4O8XB 2ZNRA 1RB7A 1MQ0A 2B3JA 4P9EA 2QLCA 1P6OA 2FR5A 5DCAJ 4LC5A 4OCMA 4MSQA 2OBCA 4OCLA 1UAQA 3DMOA 4ZD5A 1UX1A 4P9DA 4F7OA 1CTTA 1OI0A 1R5XA 4MSMA 3B8FA 4OCNB 2OG4A 4E0QA 1WN6A 3RZVA 2W4LA 2G6VA 1YSBA 1WKQA 1WWRA 2O96A 2G84A 3ZPCA 4QFTA 3SBGA 5M59B 2KKSA 2Z3JA 2ZNVA 4I43B 2PW9A 2Z3HA 1TIYA 2D5NA 2A8NA 3OJ6A 4O8YA 4PQTA 2HVWA 4MS7A 4EG2A 4P9CA 4D10F 3DH1A 1WN5A
chains in the Genus database with same CATH superfamily
2O3KA 3BH1A 4F3WA 5M52C 3OCQA 1UWZA 2RPZA 4LCOA 1THZA 4BGDC 2HXVA 4KITC 1PKXA 2Z3IA 4HRQA 4MSJA 1UX0A 2KCQA 2O7PA 1VK9A 4ZFTA 3E1UA 5CW6A 4OCNA 4MSDA 2B3ZA 2D30A 5GAOA 4OCMB 3EX8A 4NQLA 1ALNA 4HRWA 4K1RA 3ZEFB 1R5TA 2IU0A 4LCPA 4ZD4A 3G8QA 4ILGC 4WIGA 4LD4A 1M9NA 1VQ2A 3MPZA 4LD2A 5C2OA 4O8XA 4OWPA 2NX8A 2P87A 4JXEA 4EHIA 4ZFRA 4WIFA 1G8MA 4LCNA 1AF2A 3IJFX 4OCLB 1Z3AA 1YSDA 4O8YB 3R2NA 1ZABA 3VX8A 3ZPGA 2HVVA 2Z3GA 1JTKA 3RZUA 1CTUA 1OX7A 2FR6A 2NYTA 2O95A 2P8RA 4G3MA 2B1GA 4OWPB 4O8XB 3ZZMA 2ZNRA 1RB7A 1OZ0A 1MQ0A 2B3JA 4P9EA 2QLCA 1ZCZA 1P6OA 2FR5A 4GGMX 5DCAJ 4LC5A 2B1IA 4OCMA 4MSQA 2OBCA 4OCLA 1UAQA 3DMOA 4ZD5A 1UX1A 4P9DA 4A1OA 4F7OA 1CTTA 1OI0A 1R5XA 4MSMA 3B8FA 4OCNB 2OG4A 1P4RA 4E0QA 1WN6A 4J6EA 3RZVA 2W4LA 2G6VA 1YSBA 1WKQA 1WWRA 2O96A 2G84A 3ZPCA 4QFTA 2IU3A 3SBGA 5M59B 2KKSA 2Z3JA 2ZNVA 4I43B 2PW9A 2Z3HA 1TIYA 2D5NA 2A8NA 3OJ6A 4O8YA 4PQTA 2HVWA 4MS7A 1PL0A 4EG2A 4P9CA 4D10F 3DH1A 1WN5A
chains in the Genus database with same CATH topology
2O3KA 5M52C 4F3WA 3OCQA 1UWZA 2RPZA 4LCOA 4BGDC 2HXVA 4KITC 2Z3IA 4HRQA 4MSJA 1UX0A 2KCQA 2O7PA 4ZFTA 3E1UA 5CW6A 4OCNA 4MSDA 2B3ZA 2D30A 5GAOA 4OCMB 3EX8A 4NQLA 1ALNA 4HRWA 4K1RA 3ZEFB 1R5TA 4LCPA 4ZD4A 3G8QA 4ILGC 4WIGA 4LD4A 1VQ2A 3MPZA 4LD2A 5C2OA 4O8XA 4OWPA 2NX8A 2P87A 4JXEA 4ZFRA 4WIFA 4LCNA 1AF2A 3IJFX 4OCLB 1Z3AA 1YSDA 4O8YB 3R2NA 1ZABA 3ZPGA 2HVVA 2Z3GA 1JTKA 3RZUA 1CTUA 1OX7A 2FR6A 2NYTA 2O95A 2P8RA 4G3MA 4OWPB 4O8XB 2ZNRA 1RB7A 1MQ0A 2B3JA 4P9EA 2QLCA 1P6OA 2FR5A 5DCAJ 4LC5A 4OCMA 4MSQA 2OBCA 4OCLA 1UAQA 3DMOA 4ZD5A 1UX1A 4P9DA 4F7OA 1CTTA 1OI0A 1R5XA 4MSMA 3B8FA 4OCNB 2OG4A 4E0QA 1WN6A 3RZVA 2W4LA 2G6VA 1YSBA 1WKQA 1WWRA 2O96A 2G84A 3ZPCA 4QFTA 3SBGA 5M59B 2KKSA 2Z3JA 2ZNVA 4I43B 2PW9A 2Z3HA 1TIYA 2D5NA 2A8NA 3OJ6A 4O8YA 4PQTA 2HVWA 4MS7A 4EG2A 4P9CA 4D10F 3DH1A 1WN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O3K A;  5M52 C;  4F3W A;  3OCQ A;  1UWZ A;  2RPZ A;  4LCO A;  4BGD C;  2HXV A;  4KIT C;  2Z3I A;  4HRQ A;  4MSJ A;  1UX0 A;  2KCQ A;  2O7P A;  4ZFT A;  3E1U A;  5CW6 A;  4OCN A;  4MSD A;  2B3Z A;  2D30 A;  5GAO A;  4OCM B;  3EX8 A;  4NQL A;  1ALN A;  4HRW A;  4K1R A;  3ZEF B;  1R5T A;  4LCP A;  4ZD4 A;  3G8Q A;  4ILG C;  4WIG A;  4LD4 A;  1VQ2 A;  3MPZ A;  4LD2 A;  5C2O A;  4O8X A;  4OWP A;  2NX8 A;  2P87 A;  4JXE A;  4ZFR A;  4WIF A;  4LCN A;  1AF2 A;  3IJF X;  4OCL B;  1Z3A A;  1YSD A;  4O8Y B;  3R2N A;  1ZAB A;  3ZPG A;  2HVV A;  2Z3G A;  1JTK A;  3RZU A;  1CTU A;  1OX7 A;  2FR6 A;  2NYT A;  2O95 A;  2P8R A;  4G3M A;  4OWP B;  4O8X B;  2ZNR A;  1RB7 A;  1MQ0 A;  2B3J A;  4P9E A;  2QLC A;  1P6O A;  2FR5 A;  5DCA J;  4LC5 A;  4OCM A;  4MSQ A;  2OBC A;  4OCL A;  1UAQ A;  3DMO A;  4ZD5 A;  1UX1 A;  4P9D A;  4F7O A;  1CTT A;  1OI0 A;  1R5X A;  4MSM A;  3B8F A;  4OCN B;  2OG4 A;  4E0Q A;  1WN6 A;  3RZV A;  2W4L A;  2G6V A;  1YSB A;  1WKQ A;  1WWR A;  2O96 A;  2G84 A;  3ZPC A;  4QFT A;  3SBG A;  5M59 B;  2KKS A;  2Z3J A;  2ZNV A;  4I43 B;  2PW9 A;  2Z3H A;  1TIY A;  2D5N A;  2A8N A;  3OJ6 A;  4O8Y A;  4PQT A;  2HVW A;  4MS7 A;  4EG2 A;  4P9C A;  4D10 F;  3DH1 A;  1WN5 A; 
#chains in the Genus database with same CATH topology
 2O3K A;  3BH1 A;  4F3W A;  5M52 C;  3OCQ A;  1UWZ A;  2RPZ A;  4LCO A;  1THZ A;  4BGD C;  2HXV A;  4KIT C;  1PKX A;  2Z3I A;  4HRQ A;  4MSJ A;  1UX0 A;  2KCQ A;  2O7P A;  1VK9 A;  4ZFT A;  3E1U A;  5CW6 A;  4OCN A;  4MSD A;  2B3Z A;  2D30 A;  5GAO A;  4OCM B;  3EX8 A;  4NQL A;  1ALN A;  4HRW A;  4K1R A;  3ZEF B;  1R5T A;  2IU0 A;  4LCP A;  4ZD4 A;  3G8Q A;  4ILG C;  4WIG A;  4LD4 A;  1M9N A;  1VQ2 A;  3MPZ A;  4LD2 A;  5C2O A;  4O8X A;  4OWP A;  2NX8 A;  2P87 A;  4JXE A;  4EHI A;  4ZFR A;  4WIF A;  1G8M A;  4LCN A;  1AF2 A;  3IJF X;  4OCL B;  1Z3A A;  1YSD A;  4O8Y B;  3R2N A;  1ZAB A;  3VX8 A;  3ZPG A;  2HVV A;  2Z3G A;  1JTK A;  3RZU A;  1CTU A;  1OX7 A;  2FR6 A;  2NYT A;  2O95 A;  2P8R A;  4G3M A;  2B1G A;  4OWP B;  4O8X B;  3ZZM A;  2ZNR A;  1RB7 A;  1OZ0 A;  1MQ0 A;  2B3J A;  4P9E A;  2QLC A;  1ZCZ A;  1P6O A;  2FR5 A;  4GGM X;  5DCA J;  4LC5 A;  2B1I A;  4OCM A;  4MSQ A;  2OBC A;  4OCL A;  1UAQ A;  3DMO A;  4ZD5 A;  1UX1 A;  4P9D A;  4A1O A;  4F7O A;  1CTT A;  1OI0 A;  1R5X A;  4MSM A;  3B8F A;  4OCN B;  2OG4 A;  1P4R A;  4E0Q A;  1WN6 A;  4J6E A;  3RZV A;  2W4L A;  2G6V A;  1YSB A;  1WKQ A;  1WWR A;  2O96 A;  2G84 A;  3ZPC A;  4QFT A;  2IU3 A;  3SBG A;  5M59 B;  2KKS A;  2Z3J A;  2ZNV A;  4I43 B;  2PW9 A;  2Z3H A;  1TIY A;  2D5N A;  2A8N A;  3OJ6 A;  4O8Y A;  4PQT A;  2HVW A;  4MS7 A;  1PL0 A;  4EG2 A;  4P9C A;  4D10 F;  3DH1 A;  1WN5 A; 
#chains in the Genus database with same CATH homology
 2O3K A;  5M52 C;  4F3W A;  3OCQ A;  1UWZ A;  2RPZ A;  4LCO A;  4BGD C;  2HXV A;  4KIT C;  2Z3I A;  4HRQ A;  4MSJ A;  1UX0 A;  2KCQ A;  2O7P A;  4ZFT A;  3E1U A;  5CW6 A;  4OCN A;  4MSD A;  2B3Z A;  2D30 A;  5GAO A;  4OCM B;  3EX8 A;  4NQL A;  1ALN A;  4HRW A;  4K1R A;  3ZEF B;  1R5T A;  4LCP A;  4ZD4 A;  3G8Q A;  4ILG C;  4WIG A;  4LD4 A;  1VQ2 A;  3MPZ A;  4LD2 A;  5C2O A;  4O8X A;  4OWP A;  2NX8 A;  2P87 A;  4JXE A;  4ZFR A;  4WIF A;  4LCN A;  1AF2 A;  3IJF X;  4OCL B;  1Z3A A;  1YSD A;  4O8Y B;  3R2N A;  1ZAB A;  3ZPG A;  2HVV A;  2Z3G A;  1JTK A;  3RZU A;  1CTU A;  1OX7 A;  2FR6 A;  2NYT A;  2O95 A;  2P8R A;  4G3M A;  4OWP B;  4O8X B;  2ZNR A;  1RB7 A;  1MQ0 A;  2B3J A;  4P9E A;  2QLC A;  1P6O A;  2FR5 A;  5DCA J;  4LC5 A;  4OCM A;  4MSQ A;  2OBC A;  4OCL A;  1UAQ A;  3DMO A;  4ZD5 A;  1UX1 A;  4P9D A;  4F7O A;  1CTT A;  1OI0 A;  1R5X A;  4MSM A;  3B8F A;  4OCN B;  2OG4 A;  4E0Q A;  1WN6 A;  3RZV A;  2W4L A;  2G6V A;  1YSB A;  1WKQ A;  1WWR A;  2O96 A;  2G84 A;  3ZPC A;  4QFT A;  3SBG A;  5M59 B;  2KKS A;  2Z3J A;  2ZNV A;  4I43 B;  2PW9 A;  2Z3H A;  1TIY A;  2D5N A;  2A8N A;  3OJ6 A;  4O8Y A;  4PQT A;  2HVW A;  4MS7 A;  4EG2 A;  4P9C A;  4D10 F;  3DH1 A;  1WN5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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