1Z40A

Ama1 from plasmodium falciparum
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
331
structure length
311
Chain Sequence
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords apical membrane antigen 1 precursor
publication title Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 93
structure length 311
sequence length 331
chains with identical sequence E
ec nomenclature
pdb deposition date 2005-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1z40A01
4Z0EA 4Z0DA 1I8NA 3SRJA 2F83A 2Q8AA 5I25A 3ZLEA 1GMNA 2J8LA 5CS5A 3HMSA 2QJ2A 4R1BA 5CS1A 5COEA 2Q8BA 5CT2A 1GMOA 1HKYA 5EODA 4R1AA 2HGFA 2Y8RA 2Z8WA 3HMTA 4DURA 1GP9A 4A5TS 3MKPA 1W81A 4R19A 3HN4A 1NK1A 2Z8VA 4UAOA 5CP9A 4Z0FA 2K13X 2YIPA 3SP8A 4APLA 1W8KA 1Z40A 2LL4M 2QJ4A 3HMRA 5CS9A 5CT3A 4APMA 5CS3A 3SRIA 3ZWZA 5CT1A 2YILA 4UV6A 2LL3A 4Z09A 5EOKA 4R1CA 1YXEA 1BHTA 2YIOA 4IUAA 2J8JA 5CSQA 2X2ZA
chains in the Genus database with same CATH superfamily
4Z0EA 4Z0DA 1I8NA 4YIVA 3SRJA 2F83A 2Q8AA 5I25A 3ZLEA 1GMNA 2J8LA 5CS5A 3HMSA 4YIZA 2QJ2A 4R1BA 5CS1A 5COEA 2Q8BA 2KL5A 5CT2A 1GMOA 1HKYA 5EODA 4R1AA 2HGFA 2Y8RA 2Z8WA 3HMTA 4DURA 1GP9A 4A5TS 3MKPA 1W81A 4R19A 3HN4A 1NK1A 2Z8VA 4UAOA 5CP9A 4Z0FA 2K13X 2YIPA 3SP8A 4APLA 1W8KA 1Z40A 2LL4M 2QJ4A 3HMRA 5CS9A 5CT3A 4APMA 5CS3A 3SRIA 3ZWZA 5CT1A 2YILA 4UV6A 2LL3A 4Z09A 5EOKA 4R1CA 1YXEA 1BHTA 2YIOA 4IUAA 2J8JA 5CSQA 2X2ZA
chains in the Genus database with same CATH topology
4Z0EA 4Z0DA 1I8NA 4YIVA 3SRJA 2F83A 2Q8AA 5I25A 3ZLEA 1GMNA 2J8LA 5CS5A 3HMSA 4YIZA 2QJ2A 4R1BA 5CS1A 5COEA 2Q8BA 2KL5A 5CT2A 1GMOA 1HKYA 5EODA 4R1AA 2HGFA 2Y8RA 2Z8WA 3HMTA 4DURA 1GP9A 4A5TS 3MKPA 1W81A 4R19A 3HN4A 1NK1A 2Z8VA 4UAOA 5CP9A 4Z0FA 2K13X 2YIPA 3SP8A 4APLA 1W8KA 1Z40A 2LL4M 2QJ4A 3HMRA 5CS9A 5CT3A 4APMA 5CS3A 3SRIA 3ZWZA 5CT1A 2YILA 4UV6A 2LL3A 4Z09A 5EOKA 4R1CA 1YXEA 1BHTA 2YIOA 4IUAA 2J8JA 5CSQA 2X2ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z0E A;  4Z0D A;  1I8N A;  3SRJ A;  2F83 A;  2Q8A A;  5I25 A;  3ZLE A;  1GMN A;  2J8L A;  5CS5 A;  3HMS A;  2QJ2 A;  4R1B A;  5CS1 A;  5COE A;  2Q8B A;  5CT2 A;  1GMO A;  1HKY A;  5EOD A;  4R1A A;  2HGF A;  2Y8R A;  2Z8W A;  3HMT A;  4DUR A;  1GP9 A;  4A5T S;  3MKP A;  1W81 A;  4R19 A;  3HN4 A;  1NK1 A;  2Z8V A;  4UAO A;  5CP9 A;  4Z0F A;  2K13 X;  2YIP A;  3SP8 A;  4APL A;  1W8K A;  1Z40 A;  2LL4 M;  2QJ4 A;  3HMR A;  5CS9 A;  5CT3 A;  4APM A;  5CS3 A;  3SRI A;  3ZWZ A;  5CT1 A;  2YIL A;  4UV6 A;  2LL3 A;  4Z09 A;  5EOK A;  4R1C A;  1YXE A;  1BHT A;  2YIO A;  4IUA A;  2J8J A;  5CSQ A;  2X2Z A; 
#chains in the Genus database with same CATH topology
 4Z0E A;  4Z0D A;  1I8N A;  4YIV A;  3SRJ A;  2F83 A;  2Q8A A;  5I25 A;  3ZLE A;  1GMN A;  2J8L A;  5CS5 A;  3HMS A;  4YIZ A;  2QJ2 A;  4R1B A;  5CS1 A;  5COE A;  2Q8B A;  2KL5 A;  5CT2 A;  1GMO A;  1HKY A;  5EOD A;  4R1A A;  2HGF A;  2Y8R A;  2Z8W A;  3HMT A;  4DUR A;  1GP9 A;  4A5T S;  3MKP A;  1W81 A;  4R19 A;  3HN4 A;  1NK1 A;  2Z8V A;  4UAO A;  5CP9 A;  4Z0F A;  2K13 X;  2YIP A;  3SP8 A;  4APL A;  1W8K A;  1Z40 A;  2LL4 M;  2QJ4 A;  3HMR A;  5CS9 A;  5CT3 A;  4APM A;  5CS3 A;  3SRI A;  3ZWZ A;  5CT1 A;  2YIL A;  4UV6 A;  2LL3 A;  4Z09 A;  5EOK A;  4R1C A;  1YXE A;  1BHT A;  2YIO A;  4IUA A;  2J8J A;  5CSQ A;  2X2Z A; 
#chains in the Genus database with same CATH homology
 4Z0E A;  4Z0D A;  1I8N A;  4YIV A;  3SRJ A;  2F83 A;  2Q8A A;  5I25 A;  3ZLE A;  1GMN A;  2J8L A;  5CS5 A;  3HMS A;  4YIZ A;  2QJ2 A;  4R1B A;  5CS1 A;  5COE A;  2Q8B A;  2KL5 A;  5CT2 A;  1GMO A;  1HKY A;  5EOD A;  4R1A A;  2HGF A;  2Y8R A;  2Z8W A;  3HMT A;  4DUR A;  1GP9 A;  4A5T S;  3MKP A;  1W81 A;  4R19 A;  3HN4 A;  1NK1 A;  2Z8V A;  4UAO A;  5CP9 A;  4Z0F A;  2K13 X;  2YIP A;  3SP8 A;  4APL A;  1W8K A;  1Z40 A;  2LL4 M;  2QJ4 A;  3HMR A;  5CS9 A;  5CT3 A;  4APM A;  5CS3 A;  3SRI A;  3ZWZ A;  5CT1 A;  2YIL A;  4UV6 A;  2LL3 A;  4Z09 A;  5EOK A;  4R1C A;  1YXE A;  1BHT A;  2YIO A;  4IUA A;  2J8J A;  5CSQ A;  2X2Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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