1Z7S4

The crystal structure of coxsackievirus a21
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
68
Chain Sequence
GAQVSTQKTGAHENQNVAANGSTINYTTINYYKDSASNSATRQDLSQDPSKFTEPVKDLMLKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords Human COXSACKIEVIRUS A21
publication title The crystal structure of coxsackievirus a21 and its interaction with icam-1.
pubmed doi rcsb
total genus 4
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2005-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1z7s400
1BEV4 1AL24 2RMU4 1RVF4 1VBA4 3J8F4 4Q4X4 1EAH4 1HXS4 3JBG4 1NCQD 1AR94 1AR84 1AR64 1PO14 1RUH4 1RUD4 2R074 1D4M4 1VRH4 4RHV4 4PDWD 1COV4 1VBC4 3JD74 1VBE4 2RS34 1VBD4 1RHI4 4Q4Y4 1K5MD 2R044 4GB34 1OOPD 4Q4V4 4Q4W4 1RMU4 1HRI4 1PIV4 1RUG4 1Z7S4 2HWC4 2PLV4 1H8TD 2X5ID 2RM24 1AR74 1ASJ4 1NA1D 1PO24 1RUJ4 1POV0 1VBB4 2R064 2HWB4 2RR14 2RS14 1RUE4 1RUI4 2RS54 1PVC4 1RUF4 1HRV4 1RUC4 1EV14 1R084 1R094 1MQTD
chains in the Genus database with same CATH superfamily
2WU2A 3AEDA 1BEV4 1AL24 2FBWA 1VBA4 3J8F4 4Q4X4 1HXS4 1ZOYA 1PO14 1RUH4 1VRH4 3FI7A 4RHV4 1RHI4 4Q4Y4 5C2TA 4YTMA 3GQKA 1OOPD 1YQ4A 3AECA 3GQHA 2RM24 1PO24 4YSZA 3AE3A 2RS14 3AE7A 3VR8A 3SUCA 1R094 4YTPA 2RMU4 3AE9A 3VR9A 1EAH4 3JBG4 1NCQD 1KF6A 4YSXA 2PZSA 1KFYA 3AEGA 3JD74 3AE2A 5C3JA 2PY5A 1NEKA 4Q4W4 1RMU4 1HRI4 1PIV4 2HWC4 4YSYA 2ACZA 1RUJ4 1ASJ4 1NA1D 2R064 3AE5A 2HWB4 2WDVA 1RUI4 2RS54 2PYJA 1HRV4 1EV14 3VRBA 1XI1A 4YXDA 2WS3A 3AE8A 3VRAA 1RVF4 1AR94 1AR84 1AR64 2WDRA 2H88A 3AEAA 1COV4 2WP9A 3SFEA 3AEFA 2RS34 1VBD4 2EX3A 1L0VA 1K5MD 2R044 2WU5A 4Q4V4 1RUG4 2PLV4 2PW9A 1H8TD 1AR74 1RUF4 1RUC4 2R7FA 2H89A 1RUD4 2PYLA 1ZP0A 2R074 1XHZA 1D4M4 4PDWD 2B76A 1VBC4 1VBE4 3AEEA 4YT0A 1NENA 3P4RA 3AEBA 4GB34 3SFDA 1XHXA 1Z7S4 2X5ID 3AE4A 1VBB4 1POV0 2RR14 3CIRA 4YTNA 2WQYA 1RUE4 3P4QA 4KX6A 1PVC4 2WDQA 1YQ3A 3ABVA 3AE6A 3AE1A 3P4SA 3P4PA 1R084 1MQTD
chains in the Genus database with same CATH topology
1BEV4 1AL24 2RMU4 1RVF4 1VBA4 3J8F4 4Q4X4 1EAH4 1HXS4 3JBG4 1NCQD 1AR94 1AR84 1AR64 1PO14 1RUH4 1RUD4 2R074 1D4M4 1VRH4 4RHV4 4PDWD 1COV4 1VBC4 3JD74 1VBE4 2RS34 1VBD4 1RHI4 4Q4Y4 1K5MD 2R044 4GB34 1OOPD 4Q4V4 4Q4W4 1RMU4 1HRI4 1PIV4 1RUG4 1Z7S4 2HWC4 2PLV4 1H8TD 2X5ID 2RM24 1AR74 1ASJ4 1NA1D 1PO24 1RUJ4 1POV0 1VBB4 2R064 2HWB4 2RR14 2RS14 1RUE4 1RUI4 2RS54 1PVC4 1RUF4 1HRV4 1RUC4 1EV14 1R084 1R094 1MQTD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BEV 4;  1AL2 4;  2RMU 4;  1RVF 4;  1VBA 4;  3J8F 4;  4Q4X 4;  1EAH 4;  1HXS 4;  3JBG 4;  1NCQ D;  1AR9 4;  1AR8 4;  1AR6 4;  1PO1 4;  1RUH 4;  1RUD 4;  2R07 4;  1D4M 4;  1VRH 4;  4RHV 4;  4PDW D;  1COV 4;  1VBC 4;  3JD7 4;  1VBE 4;  2RS3 4;  1VBD 4;  1RHI 4;  4Q4Y 4;  1K5M D;  2R04 4;  4GB3 4;  1OOP D;  4Q4V 4;  4Q4W 4;  1RMU 4;  1HRI 4;  1PIV 4;  1RUG 4;  1Z7S 4;  2HWC 4;  2PLV 4;  1H8T D;  2X5I D;  2RM2 4;  1AR7 4;  1ASJ 4;  1NA1 D;  1PO2 4;  1RUJ 4;  1POV 0;  1VBB 4;  2R06 4;  2HWB 4;  2RR1 4;  2RS1 4;  1RUE 4;  1RUI 4;  2RS5 4;  1PVC 4;  1RUF 4;  1HRV 4;  1RUC 4;  1EV1 4;  1R08 4;  1R09 4;  1MQT D; 
#chains in the Genus database with same CATH topology
 2WU2 A;  3AED A;  1BEV 4;  1AL2 4;  2FBW A;  1VBA 4;  3J8F 4;  4Q4X 4;  1HXS 4;  1ZOY A;  1PO1 4;  1RUH 4;  1VRH 4;  3FI7 A;  4RHV 4;  1RHI 4;  4Q4Y 4;  5C2T A;  4YTM A;  3GQK A;  1OOP D;  1YQ4 A;  3AEC A;  3GQH A;  2RM2 4;  1PO2 4;  4YSZ A;  3AE3 A;  2RS1 4;  3AE7 A;  3VR8 A;  3SUC A;  1R09 4;  4YTP A;  2RMU 4;  3AE9 A;  3VR9 A;  1EAH 4;  3JBG 4;  1NCQ D;  1KF6 A;  4YSX A;  2PZS A;  1KFY A;  3AEG A;  3JD7 4;  3AE2 A;  5C3J A;  2PY5 A;  1NEK A;  4Q4W 4;  1RMU 4;  1HRI 4;  1PIV 4;  2HWC 4;  4YSY A;  2ACZ A;  1RUJ 4;  1ASJ 4;  1NA1 D;  2R06 4;  3AE5 A;  2HWB 4;  2WDV A;  1RUI 4;  2RS5 4;  2PYJ A;  1HRV 4;  1EV1 4;  3VRB A;  1XI1 A;  4YXD A;  2WS3 A;  3AE8 A;  3VRA A;  1RVF 4;  1AR9 4;  1AR8 4;  1AR6 4;  2WDR A;  2H88 A;  3AEA A;  1COV 4;  2WP9 A;  3SFE A;  3AEF A;  2RS3 4;  1VBD 4;  2EX3 A;  1L0V A;  1K5M D;  2R04 4;  2WU5 A;  4Q4V 4;  1RUG 4;  2PLV 4;  2PW9 A;  1H8T D;  1AR7 4;  1RUF 4;  1RUC 4;  2R7F A;  2H89 A;  1RUD 4;  2PYL A;  1ZP0 A;  2R07 4;  1XHZ A;  1D4M 4;  4PDW D;  2B76 A;  1VBC 4;  1VBE 4;  3AEE A;  4YT0 A;  1NEN A;  3P4R A;  3AEB A;  4GB3 4;  3SFD A;  1XHX A;  1Z7S 4;  2X5I D;  3AE4 A;  1VBB 4;  1POV 0;  2RR1 4;  3CIR A;  4YTN A;  2WQY A;  1RUE 4;  3P4Q A;  4KX6 A;  1PVC 4;  2WDQ A;  1YQ3 A;  3ABV A;  3AE6 A;  3AE1 A;  3P4S A;  3P4P A;  1R08 4;  1MQT D; 
#chains in the Genus database with same CATH homology
 1BEV 4;  1AL2 4;  2RMU 4;  1RVF 4;  1VBA 4;  3J8F 4;  4Q4X 4;  1EAH 4;  1HXS 4;  3JBG 4;  1NCQ D;  1AR9 4;  1AR8 4;  1AR6 4;  1PO1 4;  1RUH 4;  1RUD 4;  2R07 4;  1D4M 4;  1VRH 4;  4RHV 4;  4PDW D;  1COV 4;  1VBC 4;  3JD7 4;  1VBE 4;  2RS3 4;  1VBD 4;  1RHI 4;  4Q4Y 4;  1K5M D;  2R04 4;  4GB3 4;  1OOP D;  4Q4V 4;  4Q4W 4;  1RMU 4;  1HRI 4;  1PIV 4;  1RUG 4;  1Z7S 4;  2HWC 4;  2PLV 4;  1H8T D;  2X5I D;  2RM2 4;  1AR7 4;  1ASJ 4;  1NA1 D;  1PO2 4;  1RUJ 4;  1POV 0;  1VBB 4;  2R06 4;  2HWB 4;  2RR1 4;  2RS1 4;  1RUE 4;  1RUI 4;  2RS5 4;  1PVC 4;  1RUF 4;  1HRV 4;  1RUC 4;  1EV1 4;  1R08 4;  1R09 4;  1MQT D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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