1Z7S4

The crystal structure of coxsackievirus a21
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
68
Chain Sequence
GAQVSTQKTGAHENQNVAANGSTINYTTINYYKDSASNSATRQDLSQDPSKFTEPVKDLMLKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
publication title The crystal structure of coxsackievirus a21 and its interaction with icam-1.
pubmed doi rcsb
molecule keywords Human COXSACKIEVIRUS A21
total genus 4
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2005-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1z7s400
1VBA4 2RS14 1NA1D 1PO14 4GB34 2RS54 1BEV4 3J8F4 1VBE4 1RUE4 1D4M4 1VRH4 1RUG4 1VBC4 1MQTD 2X5ID 2RM24 1AR74 4PDWD 1COV4 2HWC4 1R084 4Q4W4 1HRV4 1AL24 1HXS4 1HRI4 1RUD4 1VBB4 1K5MD 1RUC4 1PIV4 1PO24 1RVF4 2HWB4 1Z7S4 2R064 2RR14 1NCQD 1RUH4 2RS34 1EAH4 1ASJ4 3JD74 1AR94 1PVC4 3JBG4 1AR64 1H8TD 1R094 1RMU4 4Q4Y4 4Q4X4 2R074 1RUJ4 1AR84 2R044 1RUI4 1EV14 1OOPD 1RUF4 4RHV4 2PLV4 4Q4V4 1RHI4 1VBD4 2RMU4 1POV0
chains in the Genus database with same CATH superfamily
1NA1D 2PYJA 4YSXA 2RS54 2B76A 4PDWD 4Q4W4 2HWC4 3SUCA 4YT0A 1RUD4 1VBB4 2H88A 2R064 2RR14 3AEFA 4YTMA 4YTNA 3AE6A 1YQ3A 1RMU4 2WDVA 2FBWA 3P4QA 2R074 1ZOYA 2WDQA 1EV14 1RUJ4 2HWB4 1POV0 2H89A 1ZP0A 1NENA 1YQ4A 1VBE4 1RUE4 4Q4Y4 1HRV4 2RM24 1COV4 1XHZA 1AL24 1HXS4 4YSZA 1PIV4 3AECA 3AE9A 1RUH4 2WP9A 3AEEA 1ASJ4 3JD74 3SFEA 2R7FA 2PZSA 3SFDA 4Q4X4 1AR84 1OOPD 1RHI4 2RMU4 3VR9A 1VBA4 3AEBA 1PO14 4YTPA 1BEV4 2WU5A 2WS3A 5C3JA 1D4M4 1VRH4 1NEKA 1RUG4 1VBC4 3AE7A 4KX6A 1AR74 2ACZA 1R084 1HRI4 3P4PA 3FI7A 1K5MD 3AE8A 3P4SA 1L0VA 3AE4A 1AR94 1XHXA 2PY5A 1R094 4YSYA 3AEDA 1RUI4 2WU2A 4Q4V4 3ABVA 3AE5A 3CIRA 2PYLA 2EX3A 2RS14 3VRBA 4GB34 3GQKA 2WDRA 3J8F4 1KF6A 3AE1A 2PW9A 5C2TA 1MQTD 2X5ID 4YXDA 3VRAA 3AEAA 2WQYA 3AE3A 1RUC4 1PO24 3AEGA 1RVF4 1XI1A 1Z7S4 1KFYA 1NCQD 2RS34 1EAH4 1PVC4 3P4RA 3JBG4 1AR64 1H8TD 3GQHA 3VR8A 2R044 4RHV4 1RUF4 2PLV4 1VBD4 3AE2A
chains in the Genus database with same CATH topology
1VBA4 2RS14 1NA1D 1PO14 4GB34 2RS54 1BEV4 3J8F4 1VBE4 1RUE4 1D4M4 1VRH4 1RUG4 1VBC4 1MQTD 2X5ID 2RM24 1AR74 4PDWD 1COV4 2HWC4 1R084 4Q4W4 1HRV4 1AL24 1HXS4 1HRI4 1RUD4 1VBB4 1K5MD 1RUC4 1PIV4 1PO24 1RVF4 2HWB4 1Z7S4 2R064 2RR14 1NCQD 1RUH4 2RS34 1EAH4 1ASJ4 3JD74 1AR94 1PVC4 3JBG4 1AR64 1H8TD 1R094 1RMU4 4Q4Y4 4Q4X4 2R074 1RUJ4 1AR84 2R044 1RUI4 1EV14 1OOPD 1RUF4 4RHV4 2PLV4 4Q4V4 1RHI4 1VBD4 2RMU4 1POV0
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBA 4;  2RS1 4;  1NA1 D;  1PO1 4;  4GB3 4;  2RS5 4;  1BEV 4;  3J8F 4;  1VBE 4;  1RUE 4;  1D4M 4;  1VRH 4;  1RUG 4;  1VBC 4;  1MQT D;  2X5I D;  2RM2 4;  1AR7 4;  4PDW D;  1COV 4;  2HWC 4;  1R08 4;  4Q4W 4;  1HRV 4;  1AL2 4;  1HXS 4;  1HRI 4;  1RUD 4;  1VBB 4;  1K5M D;  1RUC 4;  1PIV 4;  1PO2 4;  1RVF 4;  2HWB 4;  1Z7S 4;  2R06 4;  2RR1 4;  1NCQ D;  1RUH 4;  2RS3 4;  1EAH 4;  1ASJ 4;  3JD7 4;  1AR9 4;  1PVC 4;  3JBG 4;  1AR6 4;  1H8T D;  1R09 4;  1RMU 4;  4Q4Y 4;  4Q4X 4;  2R07 4;  1RUJ 4;  1AR8 4;  2R04 4;  1RUI 4;  1EV1 4;  1OOP D;  1RUF 4;  4RHV 4;  2PLV 4;  4Q4V 4;  1RHI 4;  1VBD 4;  2RMU 4;  1POV 0; 
#chains in the Genus database with same CATH topology
 1NA1 D;  2PYJ A;  4YSX A;  2RS5 4;  2B76 A;  4PDW D;  4Q4W 4;  2HWC 4;  3SUC A;  4YT0 A;  1RUD 4;  1VBB 4;  2H88 A;  2R06 4;  2RR1 4;  3AEF A;  4YTM A;  4YTN A;  3AE6 A;  1YQ3 A;  1RMU 4;  2WDV A;  2FBW A;  3P4Q A;  2R07 4;  1ZOY A;  2WDQ A;  1EV1 4;  1RUJ 4;  2HWB 4;  1POV 0;  2H89 A;  1ZP0 A;  1NEN A;  1YQ4 A;  1VBE 4;  1RUE 4;  4Q4Y 4;  1HRV 4;  2RM2 4;  1COV 4;  1XHZ A;  1AL2 4;  1HXS 4;  4YSZ A;  1PIV 4;  3AEC A;  3AE9 A;  1RUH 4;  2WP9 A;  3AEE A;  1ASJ 4;  3JD7 4;  3SFE A;  2R7F A;  2PZS A;  3SFD A;  4Q4X 4;  1AR8 4;  1OOP D;  1RHI 4;  2RMU 4;  3VR9 A;  1VBA 4;  3AEB A;  1PO1 4;  4YTP A;  1BEV 4;  2WU5 A;  2WS3 A;  5C3J A;  1D4M 4;  1VRH 4;  1NEK A;  1RUG 4;  1VBC 4;  3AE7 A;  4KX6 A;  1AR7 4;  2ACZ A;  1R08 4;  1HRI 4;  3P4P A;  3FI7 A;  1K5M D;  3AE8 A;  3P4S A;  1L0V A;  3AE4 A;  1AR9 4;  1XHX A;  2PY5 A;  1R09 4;  4YSY A;  3AED A;  1RUI 4;  2WU2 A;  4Q4V 4;  3ABV A;  3AE5 A;  3CIR A;  2PYL A;  2EX3 A;  2RS1 4;  3VRB A;  4GB3 4;  3GQK A;  2WDR A;  3J8F 4;  1KF6 A;  3AE1 A;  2PW9 A;  5C2T A;  1MQT D;  2X5I D;  4YXD A;  3VRA A;  3AEA A;  2WQY A;  3AE3 A;  1RUC 4;  1PO2 4;  3AEG A;  1RVF 4;  1XI1 A;  1Z7S 4;  1KFY A;  1NCQ D;  2RS3 4;  1EAH 4;  1PVC 4;  3P4R A;  3JBG 4;  1AR6 4;  1H8T D;  3GQH A;  3VR8 A;  2R04 4;  4RHV 4;  1RUF 4;  2PLV 4;  1VBD 4;  3AE2 A; 
#chains in the Genus database with same CATH homology
 1VBA 4;  2RS1 4;  1NA1 D;  1PO1 4;  4GB3 4;  2RS5 4;  1BEV 4;  3J8F 4;  1VBE 4;  1RUE 4;  1D4M 4;  1VRH 4;  1RUG 4;  1VBC 4;  1MQT D;  2X5I D;  2RM2 4;  1AR7 4;  4PDW D;  1COV 4;  2HWC 4;  1R08 4;  4Q4W 4;  1HRV 4;  1AL2 4;  1HXS 4;  1HRI 4;  1RUD 4;  1VBB 4;  1K5M D;  1RUC 4;  1PIV 4;  1PO2 4;  1RVF 4;  2HWB 4;  1Z7S 4;  2R06 4;  2RR1 4;  1NCQ D;  1RUH 4;  2RS3 4;  1EAH 4;  1ASJ 4;  3JD7 4;  1AR9 4;  1PVC 4;  3JBG 4;  1AR6 4;  1H8T D;  1R09 4;  1RMU 4;  4Q4Y 4;  4Q4X 4;  2R07 4;  1RUJ 4;  1AR8 4;  2R04 4;  1RUI 4;  1EV1 4;  1OOP D;  1RUF 4;  4RHV 4;  2PLV 4;  4Q4V 4;  1RHI 4;  1VBD 4;  2RMU 4;  1POV 0; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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