1Z7S4

The crystal structure of coxsackievirus a21
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
68
Chain Sequence
b'GAQVSTQKTGAHENQNVAANGSTINYTTINYYKDSASNSATRQDLSQDPSKFTEPVKDLMLKTAPALN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The crystal structure of coxsackievirus a21 and its interaction with icam-1.
pubmed doi rcsb
molecule keywords Human COXSACKIEVIRUS A21
molecule tags Virus
total genus 4
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2005-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1z7s400
1VBD4 1RUF4 2HWC4 2X5ID 1VBB4 2R044 1MQTD 2RS14 2PLV4 1EAH4 1H8TD 3JBG4 1EV14 1AL24 1PVC4 1VBE4 4Q4X4 1K5MD 1Z7S4 3J8F4 1RHI4 1R084 1PIV4 1RUI4 1RUD4 1PO24 1RUJ4 2R064 1VRH4 1D4M4 2RR14 1AR84 4PDWD 1HRV4 1RUE4 4Q4W4 1HXS4 1BEV4 1RUC4 1OOPD 1VBA4 1AR74 1AR64 1VBC4 2RM24 1POV0 1COV4 1RUH4 2HWB4 1RUG4 1RMU4 2R074 1R094 2RS54 1AR94 1NCQD 4Q4Y4 4GB34 4RHV4 4Q4V4 1NA1D 2RS34 1ASJ4 3JD74 1HRI4 2RMU4 1PO14 1RVF4
chains in the Genus database with same CATH superfamily
1VBD4 1RUF4 2X5ID 1VBB4 2PLV4 1H8TD 1PVC4 1VBE4 5C3JA 1XHXA 3SFDA 3AEFA 1RUD4 1KFYA 3VR9A 2B76A 2H89A 1OOPD 1VBA4 1AR64 3P4QA 1VBC4 1POV0 1COV4 2WU2A 1RMU4 1R094 1NCQD 4GB34 2WU5A 3AEDA 3AE3A 4Q4V4 2WDVA 2PZSA 1RUC4 3P4PA 2WDRA 2ACZA 3AE2A 4YT0A 1RVF4 1XHZA 2HWC4 1XI1A 1MQTD 3ABVA 1YQ3A 1ZOYA 3JBG4 1AL24 1Z7S4 3J8F4 1PIV4 1RUI4 1PO24 1RUJ4 2WS3A 3GQKA 1AR84 4PDWD 1HXS4 3GQHA 3AE9A 4YTNA 1NENA 1AR74 3P4SA 3SUCA 2RM24 4YSZA 3AEGA 2R074 1L0VA 4Q4Y4 4RHV4 3AECA 1NA1D 1PO14 1ZP0A 3AEBA 4YSXA 2R044 3AE8A 3SFEA 1EAH4 3CIRA 3AEEA 1RHI4 1R084 2EX3A 4YTMA 2R064 2H88A 2RR14 1HRV4 4YXDA 3FI7A 2HWB4 1RUH4 5C2TA 1RUG4 3VR8A 2PYLA 2RS54 1AR94 1NEKA 2WP9A 2PW9A 3AE4A 1KF6A 3JD74 3VRAA 2FBWA 2RS14 1EV14 4Q4X4 1K5MD 2WDQA 4YSYA 2R7FA 1VRH4 1D4M4 3AEAA 1YQ4A 3VRBA 1RUE4 4Q4W4 2PY5A 1BEV4 3P4RA 2PYJA 3AE7A 4KX6A 3AE1A 3AE5A 4YTPA 3AE6A 2RS34 2WQYA 1ASJ4 1HRI4 2RMU4
chains in the Genus database with same CATH topology
1VBD4 1RUF4 2HWC4 2X5ID 1VBB4 2R044 1MQTD 2RS14 2PLV4 1EAH4 1H8TD 3JBG4 1EV14 1AL24 1PVC4 1VBE4 4Q4X4 1K5MD 1Z7S4 3J8F4 1RHI4 1R084 1PIV4 1RUI4 1RUD4 1PO24 1RUJ4 2R064 1VRH4 1D4M4 2RR14 1AR84 4PDWD 1HRV4 1RUE4 4Q4W4 1HXS4 1BEV4 1RUC4 1OOPD 1VBA4 1AR74 1AR64 1VBC4 2RM24 1POV0 1COV4 1RUH4 2HWB4 1RUG4 1RMU4 2R074 1R094 2RS54 1AR94 1NCQD 4Q4Y4 4GB34 4RHV4 4Q4V4 1NA1D 2RS34 1ASJ4 3JD74 1HRI4 2RMU4 1PO14 1RVF4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBD 4;  1RUF 4;  2HWC 4;  2X5I D;  1VBB 4;  2R04 4;  1MQT D;  2RS1 4;  2PLV 4;  1EAH 4;  1H8T D;  3JBG 4;  1EV1 4;  1AL2 4;  1PVC 4;  1VBE 4;  4Q4X 4;  1K5M D;  1Z7S 4;  3J8F 4;  1RHI 4;  1R08 4;  1PIV 4;  1RUI 4;  1RUD 4;  1PO2 4;  1RUJ 4;  2R06 4;  1VRH 4;  1D4M 4;  2RR1 4;  1AR8 4;  4PDW D;  1HRV 4;  1RUE 4;  4Q4W 4;  1HXS 4;  1BEV 4;  1RUC 4;  1OOP D;  1VBA 4;  1AR7 4;  1AR6 4;  1VBC 4;  2RM2 4;  1POV 0;  1COV 4;  1RUH 4;  2HWB 4;  1RUG 4;  1RMU 4;  2R07 4;  1R09 4;  2RS5 4;  1AR9 4;  1NCQ D;  4Q4Y 4;  4GB3 4;  4RHV 4;  4Q4V 4;  1NA1 D;  2RS3 4;  1ASJ 4;  3JD7 4;  1HRI 4;  2RMU 4;  1PO1 4;  1RVF 4; 
#chains in the Genus database with same CATH topology
 1VBD 4;  1RUF 4;  2X5I D;  1VBB 4;  2PLV 4;  1H8T D;  1PVC 4;  1VBE 4;  5C3J A;  1XHX A;  3SFD A;  3AEF A;  1RUD 4;  1KFY A;  3VR9 A;  2B76 A;  2H89 A;  1OOP D;  1VBA 4;  1AR6 4;  3P4Q A;  1VBC 4;  1POV 0;  1COV 4;  2WU2 A;  1RMU 4;  1R09 4;  1NCQ D;  4GB3 4;  2WU5 A;  3AED A;  3AE3 A;  4Q4V 4;  2WDV A;  2PZS A;  1RUC 4;  3P4P A;  2WDR A;  2ACZ A;  3AE2 A;  4YT0 A;  1RVF 4;  1XHZ A;  2HWC 4;  1XI1 A;  1MQT D;  3ABV A;  1YQ3 A;  1ZOY A;  3JBG 4;  1AL2 4;  1Z7S 4;  3J8F 4;  1PIV 4;  1RUI 4;  1PO2 4;  1RUJ 4;  2WS3 A;  3GQK A;  1AR8 4;  4PDW D;  1HXS 4;  3GQH A;  3AE9 A;  4YTN A;  1NEN A;  1AR7 4;  3P4S A;  3SUC A;  2RM2 4;  4YSZ A;  3AEG A;  2R07 4;  1L0V A;  4Q4Y 4;  4RHV 4;  3AEC A;  1NA1 D;  1PO1 4;  1ZP0 A;  3AEB A;  4YSX A;  2R04 4;  3AE8 A;  3SFE A;  1EAH 4;  3CIR A;  3AEE A;  1RHI 4;  1R08 4;  2EX3 A;  4YTM A;  2R06 4;  2H88 A;  2RR1 4;  1HRV 4;  4YXD A;  3FI7 A;  2HWB 4;  1RUH 4;  5C2T A;  1RUG 4;  3VR8 A;  2PYL A;  2RS5 4;  1AR9 4;  1NEK A;  2WP9 A;  2PW9 A;  3AE4 A;  1KF6 A;  3JD7 4;  3VRA A;  2FBW A;  2RS1 4;  1EV1 4;  4Q4X 4;  1K5M D;  2WDQ A;  4YSY A;  2R7F A;  1VRH 4;  1D4M 4;  3AEA A;  1YQ4 A;  3VRB A;  1RUE 4;  4Q4W 4;  2PY5 A;  1BEV 4;  3P4R A;  2PYJ A;  3AE7 A;  4KX6 A;  3AE1 A;  3AE5 A;  4YTP A;  3AE6 A;  2RS3 4;  2WQY A;  1ASJ 4;  1HRI 4;  2RMU 4; 
#chains in the Genus database with same CATH homology
 1VBD 4;  1RUF 4;  2HWC 4;  2X5I D;  1VBB 4;  2R04 4;  1MQT D;  2RS1 4;  2PLV 4;  1EAH 4;  1H8T D;  3JBG 4;  1EV1 4;  1AL2 4;  1PVC 4;  1VBE 4;  4Q4X 4;  1K5M D;  1Z7S 4;  3J8F 4;  1RHI 4;  1R08 4;  1PIV 4;  1RUI 4;  1RUD 4;  1PO2 4;  1RUJ 4;  2R06 4;  1VRH 4;  1D4M 4;  2RR1 4;  1AR8 4;  4PDW D;  1HRV 4;  1RUE 4;  4Q4W 4;  1HXS 4;  1BEV 4;  1RUC 4;  1OOP D;  1VBA 4;  1AR7 4;  1AR6 4;  1VBC 4;  2RM2 4;  1POV 0;  1COV 4;  1RUH 4;  2HWB 4;  1RUG 4;  1RMU 4;  2R07 4;  1R09 4;  2RS5 4;  1AR9 4;  1NCQ D;  4Q4Y 4;  4GB3 4;  4RHV 4;  4Q4V 4;  1NA1 D;  2RS3 4;  1ASJ 4;  3JD7 4;  1HRI 4;  2RMU 4;  1PO1 4;  1RVF 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...