1Z84A

X-ray structure of galt-like protein from arabidopsis thaliana at5g18200
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
330
structure length
311
Chain Sequence
SPELRKDPVTNRWVIFSPRPTDFKSKSPSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords galactose-1-phosphate uridyl transferase-like protein
publication title Structure and Mechanism of an ADP-Glucose Phosphorylase from Arabidopsis thaliana
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 101
structure length 311
sequence length 330
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01087 GalP_UDP_transf Galactose-1-phosphate uridyl transferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1z84A02
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1z84A01
3SPLA 1HXPA 2EO4A 2OIKA 1VLRA 5CS2A 5EMTA 5BV3A 1ST0A 4NJXA 3WO5A 1ZWJA 3RHNA 3SP4A 3TW2A 3LB5A 1XMMA 1FHIA 1AV5A 3L7XA 4QDEA 2FITA 3QGZA 4QDVA 1KPEA 4FITA 1GUPA 1Z84A 4INIA 5IPBA 3N1TA 4NJYA 1FITA 5IPDA 3I24A 5RHNA 1RZYA 4EQHA 4NK0A 4NDIA 4EQEA 4INCA 4ZKLA 3BL7A 5I2FA 4RHNA 3O1CA 4YKLB 3FITA 5IN3A 3O1ZA 1ST4A 3N1SA 4NJZA 3R6FA 3P0TA 2FHIA 1EMSA 3ANOA 4XBAA 3KSVA 5ED3A 2Q4LA 3SPDA 3O0MA 6FITA 4NDGA 4QEBA 3SZQA 5IPEA 4ZKVA 1KPBA 3I4SA 6RHNA 2Q4HA 4NDFA 3BLAA 1KPAA 2H39A 3OHEA 5FITA 1GUQA 3OXKA 3NRDA 4NDHA 4ZGLA 3OMFA 1Y23A 1HXQA 3BL9A 5IPCA 5ED6A 1KPFA 4EQGA 1KPCA 3OJ7A 3O1XA 1XMLA 5I2EA 3IMIA 4EGUA
chains in the Genus database with same CATH superfamily
3SPLA 1HXPA 2EO4A 2OIKA 1VLRA 5CS2A 5EMTA 5BV3A 1ST0A 4NJXA 3WO5A 1ZWJA 3RHNA 3SP4A 4G0AA 3TW2A 3LB5A 1XMMA 1FHIA 1AV5A 3L7XA 4QDEA 2FITA 3QGZA 4I5WA 4QDVA 1KPEA 4FITA 1GUPA 1Z84A 4INIA 5IPBA 3N1TA 4G0JA 4NJYA 1FITA 5IPDA 3I24A 5RHNA 1RZYA 4EQHA 4NK0A 4NDIA 4EQEA 2R8FA 1L9VA 4INCA 4ZKLA 3BL7A 5I2FA 2GU0A 4RHNA 3O1CA 4YKLB 3FITA 5IN3A 3O1ZA 4I5VA 1ST4A 3N1SA 4NJZA 3R6FA 3P0TA 2FHIA 1EMSA 3ANOA 2R7PA 2POFA 4XBAA 3KSVA 2LJWA 5ED3A 2Q4LA 3SPDA 3O0MA 6FITA 4NDGA 2R7JA 4QEBA 3SZQA 5IPEA 4ZKVA 1KPBA 3I4SA 4I5TA 6RHNA 2Q4HA 2R7CA 4NDFA 3BLAA 1KPAA 2H39A 3OHEA 5FITA 1GUQA 3OXKA 3NRDA 4NDHA 4ZGLA 3OMFA 1Y23A 1HXQA 3BL9A 5IPCA 5ED6A 1KPFA 4EQGA 1KPCA 3OJ7A 3O1XA 1XMLA 5I2EA 3IMIA 4EGUA
chains in the Genus database with same CATH topology
3SPLA 1HXPA 2EO4A 2OIKA 1VLRA 5CS2A 5EMTA 5BV3A 1ST0A 4NJXA 3WO5A 1ZWJA 3RHNA 3SP4A 3TW2A 3LB5A 1XMMA 1FHIA 1AV5A 3L7XA 4QDEA 2FITA 3QGZA 4QDVA 1KPEA 4FITA 1GUPA 1Z84A 4INIA 5IPBA 3N1TA 4NJYA 1FITA 5IPDA 3I24A 5RHNA 1RZYA 4EQHA 4NK0A 4NDIA 4EQEA 4INCA 4ZKLA 3BL7A 5I2FA 4RHNA 3O1CA 4YKLB 3FITA 5IN3A 3O1ZA 1ST4A 3N1SA 4NJZA 3R6FA 3P0TA 2FHIA 1EMSA 3ANOA 4XBAA 3KSVA 5ED3A 2Q4LA 3SPDA 3O0MA 6FITA 4NDGA 4QEBA 3SZQA 5IPEA 4ZKVA 1KPBA 3I4SA 6RHNA 2Q4HA 4NDFA 3BLAA 1KPAA 2H39A 3OHEA 5FITA 1GUQA 3OXKA 3NRDA 4NDHA 4ZGLA 3OMFA 1Y23A 1HXQA 3BL9A 5IPCA 5ED6A 1KPFA 4EQGA 1KPCA 3OJ7A 3O1XA 1XMLA 5I2EA 3IMIA 4EGUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SPL A;  1HXP A;  2EO4 A;  2OIK A;  1VLR A;  5CS2 A;  5EMT A;  5BV3 A;  1ST0 A;  4NJX A;  3WO5 A;  1ZWJ A;  3RHN A;  3SP4 A;  3TW2 A;  3LB5 A;  1XMM A;  1FHI A;  1AV5 A;  3L7X A;  4QDE A;  2FIT A;  3QGZ A;  4QDV A;  1KPE A;  4FIT A;  1GUP A;  1Z84 A;  4INI A;  5IPB A;  3N1T A;  4NJY A;  1FIT A;  5IPD A;  3I24 A;  5RHN A;  1RZY A;  4EQH A;  4NK0 A;  4NDI A;  4EQE A;  4INC A;  4ZKL A;  3BL7 A;  5I2F A;  4RHN A;  3O1C A;  4YKL B;  3FIT A;  5IN3 A;  3O1Z A;  1ST4 A;  3N1S A;  4NJZ A;  3R6F A;  3P0T A;  2FHI A;  1EMS A;  3ANO A;  4XBA A;  3KSV A;  5ED3 A;  2Q4L A;  3SPD A;  3O0M A;  6FIT A;  4NDG A;  4QEB A;  3SZQ A;  5IPE A;  4ZKV A;  1KPB A;  3I4S A;  6RHN A;  2Q4H A;  4NDF A;  3BLA A;  1KPA A;  2H39 A;  3OHE A;  5FIT A;  1GUQ A;  3OXK A;  3NRD A;  4NDH A;  4ZGL A;  3OMF A;  1Y23 A;  1HXQ A;  3BL9 A;  5IPC A;  5ED6 A;  1KPF A;  4EQG A;  1KPC A;  3OJ7 A;  3O1X A;  1XML A;  5I2E A;  3IMI A;  4EGU A; 
#chains in the Genus database with same CATH topology
 3SPL A;  1HXP A;  2EO4 A;  2OIK A;  1VLR A;  5CS2 A;  5EMT A;  5BV3 A;  1ST0 A;  4NJX A;  3WO5 A;  1ZWJ A;  3RHN A;  3SP4 A;  4G0A A;  3TW2 A;  3LB5 A;  1XMM A;  1FHI A;  1AV5 A;  3L7X A;  4QDE A;  2FIT A;  3QGZ A;  4I5W A;  4QDV A;  1KPE A;  4FIT A;  1GUP A;  1Z84 A;  4INI A;  5IPB A;  3N1T A;  4G0J A;  4NJY A;  1FIT A;  5IPD A;  3I24 A;  5RHN A;  1RZY A;  4EQH A;  4NK0 A;  4NDI A;  4EQE A;  2R8F A;  1L9V A;  4INC A;  4ZKL A;  3BL7 A;  5I2F A;  2GU0 A;  4RHN A;  3O1C A;  4YKL B;  3FIT A;  5IN3 A;  3O1Z A;  4I5V A;  1ST4 A;  3N1S A;  4NJZ A;  3R6F A;  3P0T A;  2FHI A;  1EMS A;  3ANO A;  2R7P A;  2POF A;  4XBA A;  3KSV A;  2LJW A;  5ED3 A;  2Q4L A;  3SPD A;  3O0M A;  6FIT A;  4NDG A;  2R7J A;  4QEB A;  3SZQ A;  5IPE A;  4ZKV A;  1KPB A;  3I4S A;  4I5T A;  6RHN A;  2Q4H A;  2R7C A;  4NDF A;  3BLA A;  1KPA A;  2H39 A;  3OHE A;  5FIT A;  1GUQ A;  3OXK A;  3NRD A;  4NDH A;  4ZGL A;  3OMF A;  1Y23 A;  1HXQ A;  3BL9 A;  5IPC A;  5ED6 A;  1KPF A;  4EQG A;  1KPC A;  3OJ7 A;  3O1X A;  1XML A;  5I2E A;  3IMI A;  4EGU A; 
#chains in the Genus database with same CATH homology
 3SPL A;  1HXP A;  2EO4 A;  2OIK A;  1VLR A;  5CS2 A;  5EMT A;  5BV3 A;  1ST0 A;  4NJX A;  3WO5 A;  1ZWJ A;  3RHN A;  3SP4 A;  3TW2 A;  3LB5 A;  1XMM A;  1FHI A;  1AV5 A;  3L7X A;  4QDE A;  2FIT A;  3QGZ A;  4QDV A;  1KPE A;  4FIT A;  1GUP A;  1Z84 A;  4INI A;  5IPB A;  3N1T A;  4NJY A;  1FIT A;  5IPD A;  3I24 A;  5RHN A;  1RZY A;  4EQH A;  4NK0 A;  4NDI A;  4EQE A;  4INC A;  4ZKL A;  3BL7 A;  5I2F A;  4RHN A;  3O1C A;  4YKL B;  3FIT A;  5IN3 A;  3O1Z A;  1ST4 A;  3N1S A;  4NJZ A;  3R6F A;  3P0T A;  2FHI A;  1EMS A;  3ANO A;  4XBA A;  3KSV A;  5ED3 A;  2Q4L A;  3SPD A;  3O0M A;  6FIT A;  4NDG A;  4QEB A;  3SZQ A;  5IPE A;  4ZKV A;  1KPB A;  3I4S A;  6RHN A;  2Q4H A;  4NDF A;  3BLA A;  1KPA A;  2H39 A;  3OHE A;  5FIT A;  1GUQ A;  3OXK A;  3NRD A;  4NDH A;  4ZGL A;  3OMF A;  1Y23 A;  1HXQ A;  3BL9 A;  5IPC A;  5ED6 A;  1KPF A;  4EQG A;  1KPC A;  3OJ7 A;  3O1X A;  1XML A;  5I2E A;  3IMI A;  4EGU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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