1Z9DA

Crystal structure of a putative uridylate kinase (ump-kinase) from streptococcus pyogenes
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
238
structure length
238
Chain Sequence
EPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative uridylate kinase (UMP-kinase) from Streptococcus pyogenes
rcsb
source organism Streptococcus pyogenes
molecule tags Transferase
molecule keywords uridylate kinase
total genus 64
structure length 238
sequence length 238
chains with identical sequence B, C
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 1z9dA00
3K52A 4A7WA 2BNFA 4F6TA 2JJXA 3C1NA 4NDQA 4OLCA 1OH9A 3L86A 2BTYA 3L76A 4NDPA 2IJ9A 2BUFA 2J4LA 3EK6A 3K4OA 2CDQA 4F6TB 2A1FA 3ZZGA 2BMUA 2JI5A 4KZTA 2J5TA 3U6UA 2J0XA 3QVHA 1B7BA 3KZFA 3D2MA 3D41A 1YBDA 3D2PA 2R8VA 3AB4A 2HMFA 1OHAA 2W21A 2V5HA 3EK5A 4NDRB 2JJ4A 2OGXA 3QURA 2BRXA 2OGXB 3ZZFA 4NDRA 4NDOA 3QUNA 4Q1TA 3ZZIA 3C20A 3WWNA 2WE4A 2RD5A 2J0WA 2BNEA 4NDOB 4I49A 3WWMA 3S6HA 3C1MA 2BRIA 2J5VA 3LL5A 2VA1A 2J4JA 4JZ8A 2E9YA 3ZZHA 4AB7A 3AB2A 2AP9A 3S6KA 1E19A 1GS5A 1OHBA 3LL9A 2BNDA 4A7XA 4JZ7A 2X2WA 3TVIA 2WE5A 2V4YA 2AKOA 2R98A 3T7BA 2WXBA 3QUOA 3S6GA 1Z9DA 4AXSA 3QVFA 3NWYA 3K4YA 3LKKA 3D40A 1GSJA 4NDQB 4JZ9A 2J4KA 3B8GA 3K56A 3AAWA 4NDPB 4USJA
chains in the Genus database with same CATH superfamily
3K52A 4A7WA 2BNFA 4F6TA 2JJXA 3C1NA 4NDQA 4OLCA 1OH9A 3L86A 2BTYA 3L76A 4NDPA 2IJ9A 2BUFA 2J4LA 3EK6A 3K4OA 2CDQA 4F6TB 2A1FA 3ZZGA 2BMUA 2JI5A 4KZTA 2J5TA 3U6UA 2J0XA 3QVHA 1B7BA 3KZFA 3D2MA 3D41A 1YBDA 3D2PA 2R8VA 3AB4A 2HMFA 1OHAA 2W21A 2V5HA 3EK5A 4NDRB 2JJ4A 2OGXA 3QURA 2BRXA 2OGXB 3ZZFA 4NDRA 4NDOA 3QUNA 4Q1TA 3ZZIA 3C20A 3WWNA 2WE4A 2RD5A 2J0WA 2BNEA 4NDOB 4I49A 3WWMA 3S6HA 3C1MA 2BRIA 2J5VA 3LL5A 2VA1A 2J4JA 4JZ8A 2E9YA 3ZZHA 4AB7A 3AB2A 2AP9A 3S6KA 1E19A 1GS5A 1OHBA 3LL9A 2BNDA 4A7XA 4JZ7A 2X2WA 3TVIA 2WE5A 2V4YA 2AKOA 2R98A 3T7BA 2WXBA 3QUOA 3S6GA 1Z9DA 4AXSA 3QVFA 3NWYA 3K4YA 3LKKA 3D40A 1GSJA 4NDQB 4JZ9A 2J4KA 3B8GA 3K56A 3AAWA 4NDPB 4USJA
chains in the Genus database with same CATH topology
3K52A 4A7WA 2BNFA 4F6TA 2JJXA 3C1NA 4NDQA 4OLCA 1OH9A 3L86A 2BTYA 3L76A 4NDPA 2IJ9A 2BUFA 2J4LA 3EK6A 3K4OA 2CDQA 4F6TB 2A1FA 3ZZGA 2BMUA 2JI5A 4KZTA 2J5TA 3U6UA 2J0XA 3QVHA 1B7BA 3KZFA 3D2MA 3D41A 1YBDA 3D2PA 2R8VA 3AB4A 2HMFA 1OHAA 2W21A 2V5HA 3EK5A 4NDRB 2JJ4A 2OGXA 3QURA 2BRXA 2OGXB 3ZZFA 4NDRA 4NDOA 3QUNA 4Q1TA 3ZZIA 3C20A 3WWNA 2WE4A 2RD5A 2J0WA 2BNEA 4NDOB 4I49A 3WWMA 3S6HA 3C1MA 2BRIA 2J5VA 3LL5A 2VA1A 2J4JA 4JZ8A 2E9YA 3ZZHA 4AB7A 3AB2A 2AP9A 3S6KA 1E19A 1GS5A 1OHBA 3LL9A 2BNDA 4A7XA 4JZ7A 2X2WA 3TVIA 2WE5A 2V4YA 2AKOA 2R98A 3T7BA 2WXBA 3QUOA 3S6GA 1Z9DA 4AXSA 3QVFA 3NWYA 3K4YA 3LKKA 3D40A 1GSJA 4NDQB 4JZ9A 2J4KA 3B8GA 3K56A 3AAWA 4NDPB 4USJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K52 A;  4A7W A;  2BNF A;  4F6T A;  2JJX A;  3C1N A;  4NDQ A;  4OLC A;  1OH9 A;  3L86 A;  2BTY A;  3L76 A;  4NDP A;  2IJ9 A;  2BUF A;  2J4L A;  3EK6 A;  3K4O A;  2CDQ A;  4F6T B;  2A1F A;  3ZZG A;  2BMU A;  2JI5 A;  4KZT A;  2J5T A;  3U6U A;  2J0X A;  3QVH A;  1B7B A;  3KZF A;  3D2M A;  3D41 A;  1YBD A;  3D2P A;  2R8V A;  3AB4 A;  2HMF A;  1OHA A;  2W21 A;  2V5H A;  3EK5 A;  4NDR B;  2JJ4 A;  2OGX A;  3QUR A;  2BRX A;  2OGX B;  3ZZF A;  4NDR A;  4NDO A;  3QUN A;  4Q1T A;  3ZZI A;  3C20 A;  3WWN A;  2WE4 A;  2RD5 A;  2J0W A;  2BNE A;  4NDO B;  4I49 A;  3WWM A;  3S6H A;  3C1M A;  2BRI A;  2J5V A;  3LL5 A;  2VA1 A;  2J4J A;  4JZ8 A;  2E9Y A;  3ZZH A;  4AB7 A;  3AB2 A;  2AP9 A;  3S6K A;  1E19 A;  1GS5 A;  1OHB A;  3LL9 A;  2BND A;  4A7X A;  4JZ7 A;  2X2W A;  3TVI A;  2WE5 A;  2V4Y A;  2AKO A;  2R98 A;  3T7B A;  2WXB A;  3QUO A;  3S6G A;  1Z9D A;  4AXS A;  3QVF A;  3NWY A;  3K4Y A;  3LKK A;  3D40 A;  1GSJ A;  4NDQ B;  4JZ9 A;  2J4K A;  3B8G A;  3K56 A;  3AAW A;  4NDP B;  4USJ A; 
#chains in the Genus database with same CATH topology
 3K52 A;  4A7W A;  2BNF A;  4F6T A;  2JJX A;  3C1N A;  4NDQ A;  4OLC A;  1OH9 A;  3L86 A;  2BTY A;  3L76 A;  4NDP A;  2IJ9 A;  2BUF A;  2J4L A;  3EK6 A;  3K4O A;  2CDQ A;  4F6T B;  2A1F A;  3ZZG A;  2BMU A;  2JI5 A;  4KZT A;  2J5T A;  3U6U A;  2J0X A;  3QVH A;  1B7B A;  3KZF A;  3D2M A;  3D41 A;  1YBD A;  3D2P A;  2R8V A;  3AB4 A;  2HMF A;  1OHA A;  2W21 A;  2V5H A;  3EK5 A;  4NDR B;  2JJ4 A;  2OGX A;  3QUR A;  2BRX A;  2OGX B;  3ZZF A;  4NDR A;  4NDO A;  3QUN A;  4Q1T A;  3ZZI A;  3C20 A;  3WWN A;  2WE4 A;  2RD5 A;  2J0W A;  2BNE A;  4NDO B;  4I49 A;  3WWM A;  3S6H A;  3C1M A;  2BRI A;  2J5V A;  3LL5 A;  2VA1 A;  2J4J A;  4JZ8 A;  2E9Y A;  3ZZH A;  4AB7 A;  3AB2 A;  2AP9 A;  3S6K A;  1E19 A;  1GS5 A;  1OHB A;  3LL9 A;  2BND A;  4A7X A;  4JZ7 A;  2X2W A;  3TVI A;  2WE5 A;  2V4Y A;  2AKO A;  2R98 A;  3T7B A;  2WXB A;  3QUO A;  3S6G A;  1Z9D A;  4AXS A;  3QVF A;  3NWY A;  3K4Y A;  3LKK A;  3D40 A;  1GSJ A;  4NDQ B;  4JZ9 A;  2J4K A;  3B8G A;  3K56 A;  3AAW A;  4NDP B;  4USJ A; 
#chains in the Genus database with same CATH homology
 3K52 A;  4A7W A;  2BNF A;  4F6T A;  2JJX A;  3C1N A;  4NDQ A;  4OLC A;  1OH9 A;  3L86 A;  2BTY A;  3L76 A;  4NDP A;  2IJ9 A;  2BUF A;  2J4L A;  3EK6 A;  3K4O A;  2CDQ A;  4F6T B;  2A1F A;  3ZZG A;  2BMU A;  2JI5 A;  4KZT A;  2J5T A;  3U6U A;  2J0X A;  3QVH A;  1B7B A;  3KZF A;  3D2M A;  3D41 A;  1YBD A;  3D2P A;  2R8V A;  3AB4 A;  2HMF A;  1OHA A;  2W21 A;  2V5H A;  3EK5 A;  4NDR B;  2JJ4 A;  2OGX A;  3QUR A;  2BRX A;  2OGX B;  3ZZF A;  4NDR A;  4NDO A;  3QUN A;  4Q1T A;  3ZZI A;  3C20 A;  3WWN A;  2WE4 A;  2RD5 A;  2J0W A;  2BNE A;  4NDO B;  4I49 A;  3WWM A;  3S6H A;  3C1M A;  2BRI A;  2J5V A;  3LL5 A;  2VA1 A;  2J4J A;  4JZ8 A;  2E9Y A;  3ZZH A;  4AB7 A;  3AB2 A;  2AP9 A;  3S6K A;  1E19 A;  1GS5 A;  1OHB A;  3LL9 A;  2BND A;  4A7X A;  4JZ7 A;  2X2W A;  3TVI A;  2WE5 A;  2V4Y A;  2AKO A;  2R98 A;  3T7B A;  2WXB A;  3QUO A;  3S6G A;  1Z9D A;  4AXS A;  3QVF A;  3NWY A;  3K4Y A;  3LKK A;  3D40 A;  1GSJ A;  4NDQ B;  4JZ9 A;  2J4K A;  3B8G A;  3K56 A;  3AAW A;  4NDP B;  4USJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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