1ZJ8A

Structure of mycobacterium tuberculosis nira protein
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
546
structure length
546
Chain Sequence
b'RNEGQWALGHREPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGERFAQWVIRAEEDDLR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Probable ferredoxin-dependent nitrite reductase NirA
publication title Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis Is a Sulfite Reductase with a Covalent Cys-Tyr Bond in the Active Site
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 181
structure length 546
sequence length 546
chains with identical sequence B
ec nomenclature ec 1.8.7.1: Assimilatory sulfite reductase (ferredoxin).
pdb deposition date 2005-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj8A03
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj8A04
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 1zj8A02
3MM5A 3OR2B 3VKRA 3VLYA 3MMAA 4HTRA 4S23A 4S3DA 3NOYA 3B0HA 3MM9B 5AOPA 2XSJA 3MM8B 3B0LA 2Y0FA 3MM6B 3VKTA 4S3CA 4S3AA 2AOPA 3MMCB 3OR1B 3B0GA 3MM7A 4G9PA 3B0NA 2AKJA 3GEOA 4S38A 3MMBB 2V4JB 3OR2A 3VKQA 6GEPA 3MM9A 3MM5B 2GEPA 4S3EA 3VKPA 4S3FA 3MM8A 4AOPA 3MMAB 3MM6A 1ZJ9A 3MMCA 3OR1A 4G39A 4S3BA 5GEPA 3VKSA 3VM0A 3VLZA 1ZJ8A 2XSJB 7GEPA 8GEPA 3B0MA 1AOPA 4S39A 3AOPA 3VLXA 3VM1A 3B0JA 4GEPA 3MMBA 3MM7B 2V4JA 4G38A
chains in the Genus database with same CATH superfamily
3MM5A 3OR2B 3VKRA 3VLYA 3MMAA 4HTRA 4S23A 4S3DA 3NOYA 3B0HA 3MM9B 5AOPA 2XSJA 3MM8B 3B0LA 2Y0FA 3MM6B 3VKTA 4S3CA 4S3AA 2AOPA 3MMCB 3OR1B 3B0GA 3MM7A 4G9PA 3B0NA 2AKJA 3GEOA 4S38A 3MMBB 2V4JB 3OR2A 3VKQA 6GEPA 3MM9A 3MM5B 2GEPA 4S3EA 3VKPA 4S3FA 3MM8A 4AOPA 3MMAB 3MM6A 1ZJ9A 3MMCA 3OR1A 4G39A 4S3BA 5GEPA 3VKSA 3VM0A 3VLZA 1ZJ8A 2XSJB 7GEPA 8GEPA 3B0MA 1AOPA 4S39A 3AOPA 3VLXA 3VM1A 3B0JA 4GEPA 3MMBA 3MM7B 2V4JA 4G38A
chains in the Genus database with same CATH topology
3MM5A 3OR2B 3VKRA 3VLYA 3MMAA 4HTRA 4S23A 4S3DA 3NOYA 3B0HA 3MM9B 5AOPA 2XSJA 3MM8B 3B0LA 2Y0FA 3MM6B 3VKTA 4S3CA 4S3AA 2AOPA 3MMCB 3OR1B 3B0GA 3MM7A 4G9PA 3B0NA 2AKJA 3GEOA 4S38A 3MMBB 2V4JB 3OR2A 3VKQA 6GEPA 3MM9A 3MM5B 2GEPA 4S3EA 3VKPA 4S3FA 3MM8A 4AOPA 3MMAB 3MM6A 1ZJ9A 3MMCA 3OR1A 4G39A 4S3BA 5GEPA 3VKSA 3VM0A 3VLZA 1ZJ8A 2XSJB 7GEPA 8GEPA 3B0MA 1AOPA 4S39A 3AOPA 3VLXA 3VM1A 3B0JA 4GEPA 3MMBA 3MM7B 2V4JA 4G38A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MM5 A;  3OR2 B;  3VKR A;  3VLY A;  3MMA A;  4HTR A;  4S23 A;  4S3D A;  3NOY A;  3B0H A;  3MM9 B;  5AOP A;  2XSJ A;  3MM8 B;  3B0L A;  2Y0F A;  3MM6 B;  3VKT A;  4S3C A;  4S3A A;  2AOP A;  3MMC B;  3OR1 B;  3B0G A;  3MM7 A;  4G9P A;  3B0N A;  2AKJ A;  3GEO A;  4S38 A;  3MMB B;  2V4J B;  3OR2 A;  3VKQ A;  6GEP A;  3MM9 A;  3MM5 B;  2GEP A;  4S3E A;  3VKP A;  4S3F A;  3MM8 A;  4AOP A;  3MMA B;  3MM6 A;  1ZJ9 A;  3MMC A;  3OR1 A;  4G39 A;  4S3B A;  5GEP A;  3VKS A;  3VM0 A;  3VLZ A;  1ZJ8 A;  2XSJ B;  7GEP A;  8GEP A;  3B0M A;  1AOP A;  4S39 A;  3AOP A;  3VLX A;  3VM1 A;  3B0J A;  4GEP A;  3MMB A;  3MM7 B;  2V4J A;  4G38 A; 
#chains in the Genus database with same CATH topology
 3MM5 A;  3OR2 B;  3VKR A;  3VLY A;  3MMA A;  4HTR A;  4S23 A;  4S3D A;  3NOY A;  3B0H A;  3MM9 B;  5AOP A;  2XSJ A;  3MM8 B;  3B0L A;  2Y0F A;  3MM6 B;  3VKT A;  4S3C A;  4S3A A;  2AOP A;  3MMC B;  3OR1 B;  3B0G A;  3MM7 A;  4G9P A;  3B0N A;  2AKJ A;  3GEO A;  4S38 A;  3MMB B;  2V4J B;  3OR2 A;  3VKQ A;  6GEP A;  3MM9 A;  3MM5 B;  2GEP A;  4S3E A;  3VKP A;  4S3F A;  3MM8 A;  4AOP A;  3MMA B;  3MM6 A;  1ZJ9 A;  3MMC A;  3OR1 A;  4G39 A;  4S3B A;  5GEP A;  3VKS A;  3VM0 A;  3VLZ A;  1ZJ8 A;  2XSJ B;  7GEP A;  8GEP A;  3B0M A;  1AOP A;  4S39 A;  3AOP A;  3VLX A;  3VM1 A;  3B0J A;  4GEP A;  3MMB A;  3MM7 B;  2V4J A;  4G38 A; 
#chains in the Genus database with same CATH homology
 3MM5 A;  3OR2 B;  3VKR A;  3VLY A;  3MMA A;  4HTR A;  4S23 A;  4S3D A;  3NOY A;  3B0H A;  3MM9 B;  5AOP A;  2XSJ A;  3MM8 B;  3B0L A;  2Y0F A;  3MM6 B;  3VKT A;  4S3C A;  4S3A A;  2AOP A;  3MMC B;  3OR1 B;  3B0G A;  3MM7 A;  4G9P A;  3B0N A;  2AKJ A;  3GEO A;  4S38 A;  3MMB B;  2V4J B;  3OR2 A;  3VKQ A;  6GEP A;  3MM9 A;  3MM5 B;  2GEP A;  4S3E A;  3VKP A;  4S3F A;  3MM8 A;  4AOP A;  3MMA B;  3MM6 A;  1ZJ9 A;  3MMC A;  3OR1 A;  4G39 A;  4S3B A;  5GEP A;  3VKS A;  3VM0 A;  3VLZ A;  1ZJ8 A;  2XSJ B;  7GEP A;  8GEP A;  3B0M A;  1AOP A;  4S39 A;  3AOP A;  3VLX A;  3VM1 A;  3B0J A;  4GEP A;  3MMB A;  3MM7 B;  2V4J A;  4G38 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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