1ZJ8A

Structure of mycobacterium tuberculosis nira protein
Total Genus 181
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
546
structure length
546
Chain Sequence
RNEGQWALGHREPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGERFAQWVIRAEEDDLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Probable ferredoxin-dependent nitrite reductase NirA
publication title Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis Is a Sulfite Reductase with a Covalent Cys-Tyr Bond in the Active Site
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 181
structure length 546
sequence length 546
chains with identical sequence B
ec nomenclature ec 1.8.7.1: Assimilatory sulfite reductase (ferredoxin).
pdb deposition date 2005-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj8A03
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj8A04
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 1zj8A02
2AKJA 2XSJA 3MM5A 3NOYA 3VLXA 3B0LA 3VKRA 3MM6A 3VM0A 1ZJ9A 2Y0FA 3B0JA 4S23A 4S3AA 1AOPA 4G38A 2V4JB 3B0HA 1ZJ8A 3MM8A 3AOPA 3MMAB 4G39A 3MM9A 3MM5B 2XSJB 4S3EA 3GEOA 4S3CA 3B0NA 3MM6B 8GEPA 3MMCA 3VKQA 4S39A 3OR2A 3MMBA 3VKPA 5GEPA 3VLYA 3MM8B 2GEPA 4S38A 4S3DA 3MM9B 3B0GA 5AOPA 7GEPA 3VKSA 3MM7A 4GEPA 3MMCB 3OR1A 3B0MA 4S3FA 3VKTA 3OR2B 3MMBB 4G9PA 4S3BA 6GEPA 4HTRA 3VM1A 2AOPA 3MM7B 3VLZA 2V4JA 3OR1B 3MMAA 4AOPA
chains in the Genus database with same CATH superfamily
2AKJA 2XSJA 3MM5A 3NOYA 3VLXA 3B0LA 3VKRA 3MM6A 3VM0A 1ZJ9A 2Y0FA 3B0JA 4S23A 4S3AA 1AOPA 4G38A 2V4JB 3B0HA 1ZJ8A 3MM8A 3AOPA 3MMAB 4G39A 3MM9A 3MM5B 2XSJB 4S3EA 3GEOA 4S3CA 3B0NA 3MM6B 8GEPA 3MMCA 3VKQA 4S39A 3OR2A 3MMBA 3VKPA 5GEPA 3VLYA 3MM8B 2GEPA 4S38A 4S3DA 3MM9B 3B0GA 5AOPA 7GEPA 3VKSA 3MM7A 4GEPA 3MMCB 3OR1A 3B0MA 4S3FA 3VKTA 3OR2B 3MMBB 4G9PA 4S3BA 6GEPA 4HTRA 3VM1A 2AOPA 3MM7B 3VLZA 2V4JA 3OR1B 3MMAA 4AOPA
chains in the Genus database with same CATH topology
2AKJA 2XSJA 3MM5A 3NOYA 3VLXA 3B0LA 3VKRA 3MM6A 3VM0A 1ZJ9A 2Y0FA 3B0JA 4S23A 4S3AA 1AOPA 4G38A 2V4JB 3B0HA 1ZJ8A 3MM8A 3AOPA 3MMAB 4G39A 3MM9A 3MM5B 2XSJB 4S3EA 3GEOA 4S3CA 3B0NA 3MM6B 8GEPA 3MMCA 3VKQA 4S39A 3OR2A 3MMBA 3VKPA 5GEPA 3VLYA 3MM8B 2GEPA 4S38A 4S3DA 3MM9B 3B0GA 5AOPA 7GEPA 3VKSA 3MM7A 4GEPA 3MMCB 3OR1A 3B0MA 4S3FA 3VKTA 3OR2B 3MMBB 4G9PA 4S3BA 6GEPA 4HTRA 3VM1A 2AOPA 3MM7B 3VLZA 2V4JA 3OR1B 3MMAA 4AOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AKJ A;  2XSJ A;  3MM5 A;  3NOY A;  3VLX A;  3B0L A;  3VKR A;  3MM6 A;  3VM0 A;  1ZJ9 A;  2Y0F A;  3B0J A;  4S23 A;  4S3A A;  1AOP A;  4G38 A;  2V4J B;  3B0H A;  1ZJ8 A;  3MM8 A;  3AOP A;  3MMA B;  4G39 A;  3MM9 A;  3MM5 B;  2XSJ B;  4S3E A;  3GEO A;  4S3C A;  3B0N A;  3MM6 B;  8GEP A;  3MMC A;  3VKQ A;  4S39 A;  3OR2 A;  3MMB A;  3VKP A;  5GEP A;  3VLY A;  3MM8 B;  2GEP A;  4S38 A;  4S3D A;  3MM9 B;  3B0G A;  5AOP A;  7GEP A;  3VKS A;  3MM7 A;  4GEP A;  3MMC B;  3OR1 A;  3B0M A;  4S3F A;  3VKT A;  3OR2 B;  3MMB B;  4G9P A;  4S3B A;  6GEP A;  4HTR A;  3VM1 A;  2AOP A;  3MM7 B;  3VLZ A;  2V4J A;  3OR1 B;  3MMA A;  4AOP A; 
#chains in the Genus database with same CATH topology
 2AKJ A;  2XSJ A;  3MM5 A;  3NOY A;  3VLX A;  3B0L A;  3VKR A;  3MM6 A;  3VM0 A;  1ZJ9 A;  2Y0F A;  3B0J A;  4S23 A;  4S3A A;  1AOP A;  4G38 A;  2V4J B;  3B0H A;  1ZJ8 A;  3MM8 A;  3AOP A;  3MMA B;  4G39 A;  3MM9 A;  3MM5 B;  2XSJ B;  4S3E A;  3GEO A;  4S3C A;  3B0N A;  3MM6 B;  8GEP A;  3MMC A;  3VKQ A;  4S39 A;  3OR2 A;  3MMB A;  3VKP A;  5GEP A;  3VLY A;  3MM8 B;  2GEP A;  4S38 A;  4S3D A;  3MM9 B;  3B0G A;  5AOP A;  7GEP A;  3VKS A;  3MM7 A;  4GEP A;  3MMC B;  3OR1 A;  3B0M A;  4S3F A;  3VKT A;  3OR2 B;  3MMB B;  4G9P A;  4S3B A;  6GEP A;  4HTR A;  3VM1 A;  2AOP A;  3MM7 B;  3VLZ A;  2V4J A;  3OR1 B;  3MMA A;  4AOP A; 
#chains in the Genus database with same CATH homology
 2AKJ A;  2XSJ A;  3MM5 A;  3NOY A;  3VLX A;  3B0L A;  3VKR A;  3MM6 A;  3VM0 A;  1ZJ9 A;  2Y0F A;  3B0J A;  4S23 A;  4S3A A;  1AOP A;  4G38 A;  2V4J B;  3B0H A;  1ZJ8 A;  3MM8 A;  3AOP A;  3MMA B;  4G39 A;  3MM9 A;  3MM5 B;  2XSJ B;  4S3E A;  3GEO A;  4S3C A;  3B0N A;  3MM6 B;  8GEP A;  3MMC A;  3VKQ A;  4S39 A;  3OR2 A;  3MMB A;  3VKP A;  5GEP A;  3VLY A;  3MM8 B;  2GEP A;  4S38 A;  4S3D A;  3MM9 B;  3B0G A;  5AOP A;  7GEP A;  3VKS A;  3MM7 A;  4GEP A;  3MMC B;  3OR1 A;  3B0M A;  4S3F A;  3VKT A;  3OR2 B;  3MMB B;  4G9P A;  4S3B A;  6GEP A;  4HTR A;  3VM1 A;  2AOP A;  3MM7 B;  3VLZ A;  2V4J A;  3OR1 B;  3MMA A;  4AOP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...