1ZJ9A

Structure of mycobacterium tuberculosis nira protein
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
546
structure length
546
Chain Sequence
b'RNEGQWALGHREPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGERFAQWVIRAEEDDLR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Probable ferredoxin-dependent nitrite reductase NirA
publication title Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis Is a Sulfite Reductase with a Covalent Cys-Tyr Bond in the Active Site
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 177
structure length 546
sequence length 546
chains with identical sequence B
ec nomenclature ec 1.8.7.1: Assimilatory sulfite reductase (ferredoxin).
pdb deposition date 2005-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj9A03
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj9A04
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 1zj9A02
2V4JA 3B0MA 3OR1B 2Y0FA 4S3FA 3GEOA 3MM8B 3MMCB 4S38A 3MM6A 3VKTA 3MMBA 3VKPA 2AKJA 4S3BA 3MM5A 4G9PA 3VLYA 3MM9A 4S3EA 3VLXA 4G39A 3OR2B 1AOPA 3MMBB 3VM0A 1ZJ8A 2V4JB 3B0GA 2XSJB 3MM7A 3VKSA 3OR1A 3MMAA 3MM8A 3VLZA 3NOYA 3MMCA 3VKQA 4HTRA 2AOPA 3B0HA 3MM6B 5GEPA 4GEPA 4AOPA 4G38A 8GEPA 3MM9B 4S23A 3B0LA 3MM5B 4S39A 3AOPA 4S3DA 5AOPA 3VKRA 3VM1A 3B0JA 7GEPA 1ZJ9A 4S3CA 6GEPA 3MM7B 2GEPA 4S3AA 3OR2A 3B0NA 3MMAB 2XSJA
chains in the Genus database with same CATH superfamily
2V4JA 3B0MA 3OR1B 2Y0FA 4S3FA 3GEOA 3MM8B 3MMCB 4S38A 3MM6A 3VKTA 3MMBA 3VKPA 2AKJA 4S3BA 3MM5A 4G9PA 3VLYA 3MM9A 4S3EA 3VLXA 4G39A 3OR2B 1AOPA 3MMBB 3VM0A 1ZJ8A 2V4JB 3B0GA 2XSJB 3MM7A 3VKSA 3OR1A 3MMAA 3MM8A 3VLZA 3NOYA 3MMCA 3VKQA 4HTRA 2AOPA 3B0HA 3MM6B 5GEPA 4GEPA 4AOPA 4G38A 8GEPA 3MM9B 4S23A 3B0LA 3MM5B 4S39A 3AOPA 4S3DA 5AOPA 3VKRA 3VM1A 3B0JA 7GEPA 1ZJ9A 4S3CA 6GEPA 3MM7B 2GEPA 4S3AA 3OR2A 3B0NA 3MMAB 2XSJA
chains in the Genus database with same CATH topology
2V4JA 3B0MA 3OR1B 2Y0FA 4S3FA 3GEOA 3MM8B 3MMCB 4S38A 3MM6A 3VKTA 3MMBA 3VKPA 2AKJA 4S3BA 3MM5A 4G9PA 3VLYA 3MM9A 4S3EA 3VLXA 4G39A 3OR2B 1AOPA 3MMBB 3VM0A 1ZJ8A 2V4JB 3B0GA 2XSJB 3MM7A 3VKSA 3OR1A 3MMAA 3MM8A 3VLZA 3NOYA 3MMCA 3VKQA 4HTRA 2AOPA 3B0HA 3MM6B 5GEPA 4GEPA 4AOPA 4G38A 8GEPA 3MM9B 4S23A 3B0LA 3MM5B 4S39A 3AOPA 4S3DA 5AOPA 3VKRA 3VM1A 3B0JA 7GEPA 1ZJ9A 4S3CA 6GEPA 3MM7B 2GEPA 4S3AA 3OR2A 3B0NA 3MMAB 2XSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V4J A;  3B0M A;  3OR1 B;  2Y0F A;  4S3F A;  3GEO A;  3MM8 B;  3MMC B;  4S38 A;  3MM6 A;  3VKT A;  3MMB A;  3VKP A;  2AKJ A;  4S3B A;  3MM5 A;  4G9P A;  3VLY A;  3MM9 A;  4S3E A;  3VLX A;  4G39 A;  3OR2 B;  1AOP A;  3MMB B;  3VM0 A;  1ZJ8 A;  2V4J B;  3B0G A;  2XSJ B;  3MM7 A;  3VKS A;  3OR1 A;  3MMA A;  3MM8 A;  3VLZ A;  3NOY A;  3MMC A;  3VKQ A;  4HTR A;  2AOP A;  3B0H A;  3MM6 B;  5GEP A;  4GEP A;  4AOP A;  4G38 A;  8GEP A;  3MM9 B;  4S23 A;  3B0L A;  3MM5 B;  4S39 A;  3AOP A;  4S3D A;  5AOP A;  3VKR A;  3VM1 A;  3B0J A;  7GEP A;  1ZJ9 A;  4S3C A;  6GEP A;  3MM7 B;  2GEP A;  4S3A A;  3OR2 A;  3B0N A;  3MMA B;  2XSJ A; 
#chains in the Genus database with same CATH topology
 2V4J A;  3B0M A;  3OR1 B;  2Y0F A;  4S3F A;  3GEO A;  3MM8 B;  3MMC B;  4S38 A;  3MM6 A;  3VKT A;  3MMB A;  3VKP A;  2AKJ A;  4S3B A;  3MM5 A;  4G9P A;  3VLY A;  3MM9 A;  4S3E A;  3VLX A;  4G39 A;  3OR2 B;  1AOP A;  3MMB B;  3VM0 A;  1ZJ8 A;  2V4J B;  3B0G A;  2XSJ B;  3MM7 A;  3VKS A;  3OR1 A;  3MMA A;  3MM8 A;  3VLZ A;  3NOY A;  3MMC A;  3VKQ A;  4HTR A;  2AOP A;  3B0H A;  3MM6 B;  5GEP A;  4GEP A;  4AOP A;  4G38 A;  8GEP A;  3MM9 B;  4S23 A;  3B0L A;  3MM5 B;  4S39 A;  3AOP A;  4S3D A;  5AOP A;  3VKR A;  3VM1 A;  3B0J A;  7GEP A;  1ZJ9 A;  4S3C A;  6GEP A;  3MM7 B;  2GEP A;  4S3A A;  3OR2 A;  3B0N A;  3MMA B;  2XSJ A; 
#chains in the Genus database with same CATH homology
 2V4J A;  3B0M A;  3OR1 B;  2Y0F A;  4S3F A;  3GEO A;  3MM8 B;  3MMC B;  4S38 A;  3MM6 A;  3VKT A;  3MMB A;  3VKP A;  2AKJ A;  4S3B A;  3MM5 A;  4G9P A;  3VLY A;  3MM9 A;  4S3E A;  3VLX A;  4G39 A;  3OR2 B;  1AOP A;  3MMB B;  3VM0 A;  1ZJ8 A;  2V4J B;  3B0G A;  2XSJ B;  3MM7 A;  3VKS A;  3OR1 A;  3MMA A;  3MM8 A;  3VLZ A;  3NOY A;  3MMC A;  3VKQ A;  4HTR A;  2AOP A;  3B0H A;  3MM6 B;  5GEP A;  4GEP A;  4AOP A;  4G38 A;  8GEP A;  3MM9 B;  4S23 A;  3B0L A;  3MM5 B;  4S39 A;  3AOP A;  4S3D A;  5AOP A;  3VKR A;  3VM1 A;  3B0J A;  7GEP A;  1ZJ9 A;  4S3C A;  6GEP A;  3MM7 B;  2GEP A;  4S3A A;  3OR2 A;  3B0N A;  3MMA B;  2XSJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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