1ZJ9A

Structure of mycobacterium tuberculosis nira protein
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
546
structure length
546
Chain Sequence
RNEGQWALGHREPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGERFAQWVIRAEEDDLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis Is a Sulfite Reductase with a Covalent Cys-Tyr Bond in the Active Site
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
molecule keywords Probable ferredoxin-dependent nitrite reductase NirA
total genus 177
structure length 546
sequence length 546
chains with identical sequence B
ec nomenclature ec 1.8.7.1: Assimilatory sulfite reductase (ferredoxin).
pdb deposition date 2005-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj9A03
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 1zj9A04
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 1zj9A02
2XSJB 3VM0A 3GEOA 3B0JA 3MM6B 3MMAB 3VLYA 2GEPA 1ZJ9A 2Y0FA 3MM9B 3B0HA 4G38A 6GEPA 3MMCB 4S23A 3MM5B 3OR1B 4S38A 8GEPA 3MMCA 4S3BA 3VKRA 3NOYA 3MM8B 3MM5A 3OR1A 3MM6A 3VKSA 3B0MA 2AOPA 4HTRA 3VM1A 4G39A 4S3EA 3MM8A 3VKQA 3VKTA 5GEPA 2XSJA 4G9PA 3MMAA 3MMBA 3MM7A 5AOPA 4S3CA 2V4JB 3B0LA 1AOPA 1ZJ8A 3MM9A 4S3FA 3B0GA 4S3AA 3OR2A 3MMBB 3MM7B 3VKPA 4GEPA 2V4JA 3OR2B 4S3DA 7GEPA 4S39A 3VLZA 4AOPA 3AOPA 3B0NA 2AKJA 3VLXA
chains in the Genus database with same CATH superfamily
2XSJB 3VM0A 3GEOA 3B0JA 3MM6B 3MMAB 3VLYA 2GEPA 1ZJ9A 2Y0FA 3MM9B 3B0HA 4G38A 6GEPA 3MMCB 4S23A 3MM5B 3OR1B 4S38A 8GEPA 3MMCA 4S3BA 3VKRA 3NOYA 3MM8B 3MM5A 3OR1A 3MM6A 3VKSA 3B0MA 2AOPA 4HTRA 3VM1A 4G39A 4S3EA 3MM8A 3VKQA 3VKTA 5GEPA 2XSJA 4G9PA 3MMAA 3MMBA 3MM7A 5AOPA 4S3CA 2V4JB 3B0LA 1AOPA 1ZJ8A 3MM9A 4S3FA 3B0GA 4S3AA 3OR2A 3MMBB 3MM7B 3VKPA 4GEPA 2V4JA 3OR2B 4S3DA 7GEPA 4S39A 3VLZA 4AOPA 3AOPA 3B0NA 2AKJA 3VLXA
chains in the Genus database with same CATH topology
2XSJB 3VM0A 3GEOA 3B0JA 3MM6B 3MMAB 3VLYA 2GEPA 1ZJ9A 2Y0FA 3MM9B 3B0HA 4G38A 6GEPA 3MMCB 4S23A 3MM5B 3OR1B 4S38A 8GEPA 3MMCA 4S3BA 3VKRA 3NOYA 3MM8B 3MM5A 3OR1A 3MM6A 3VKSA 3B0MA 2AOPA 4HTRA 3VM1A 4G39A 4S3EA 3MM8A 3VKQA 3VKTA 5GEPA 2XSJA 4G9PA 3MMAA 3MMBA 3MM7A 5AOPA 4S3CA 2V4JB 3B0LA 1AOPA 1ZJ8A 3MM9A 4S3FA 3B0GA 4S3AA 3OR2A 3MMBB 3MM7B 3VKPA 4GEPA 2V4JA 3OR2B 4S3DA 7GEPA 4S39A 3VLZA 4AOPA 3AOPA 3B0NA 2AKJA 3VLXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XSJ B;  3VM0 A;  3GEO A;  3B0J A;  3MM6 B;  3MMA B;  3VLY A;  2GEP A;  1ZJ9 A;  2Y0F A;  3MM9 B;  3B0H A;  4G38 A;  6GEP A;  3MMC B;  4S23 A;  3MM5 B;  3OR1 B;  4S38 A;  8GEP A;  3MMC A;  4S3B A;  3VKR A;  3NOY A;  3MM8 B;  3MM5 A;  3OR1 A;  3MM6 A;  3VKS A;  3B0M A;  2AOP A;  4HTR A;  3VM1 A;  4G39 A;  4S3E A;  3MM8 A;  3VKQ A;  3VKT A;  5GEP A;  2XSJ A;  4G9P A;  3MMA A;  3MMB A;  3MM7 A;  5AOP A;  4S3C A;  2V4J B;  3B0L A;  1AOP A;  1ZJ8 A;  3MM9 A;  4S3F A;  3B0G A;  4S3A A;  3OR2 A;  3MMB B;  3MM7 B;  3VKP A;  4GEP A;  2V4J A;  3OR2 B;  4S3D A;  7GEP A;  4S39 A;  3VLZ A;  4AOP A;  3AOP A;  3B0N A;  2AKJ A;  3VLX A; 
#chains in the Genus database with same CATH topology
 2XSJ B;  3VM0 A;  3GEO A;  3B0J A;  3MM6 B;  3MMA B;  3VLY A;  2GEP A;  1ZJ9 A;  2Y0F A;  3MM9 B;  3B0H A;  4G38 A;  6GEP A;  3MMC B;  4S23 A;  3MM5 B;  3OR1 B;  4S38 A;  8GEP A;  3MMC A;  4S3B A;  3VKR A;  3NOY A;  3MM8 B;  3MM5 A;  3OR1 A;  3MM6 A;  3VKS A;  3B0M A;  2AOP A;  4HTR A;  3VM1 A;  4G39 A;  4S3E A;  3MM8 A;  3VKQ A;  3VKT A;  5GEP A;  2XSJ A;  4G9P A;  3MMA A;  3MMB A;  3MM7 A;  5AOP A;  4S3C A;  2V4J B;  3B0L A;  1AOP A;  1ZJ8 A;  3MM9 A;  4S3F A;  3B0G A;  4S3A A;  3OR2 A;  3MMB B;  3MM7 B;  3VKP A;  4GEP A;  2V4J A;  3OR2 B;  4S3D A;  7GEP A;  4S39 A;  3VLZ A;  4AOP A;  3AOP A;  3B0N A;  2AKJ A;  3VLX A; 
#chains in the Genus database with same CATH homology
 2XSJ B;  3VM0 A;  3GEO A;  3B0J A;  3MM6 B;  3MMA B;  3VLY A;  2GEP A;  1ZJ9 A;  2Y0F A;  3MM9 B;  3B0H A;  4G38 A;  6GEP A;  3MMC B;  4S23 A;  3MM5 B;  3OR1 B;  4S38 A;  8GEP A;  3MMC A;  4S3B A;  3VKR A;  3NOY A;  3MM8 B;  3MM5 A;  3OR1 A;  3MM6 A;  3VKS A;  3B0M A;  2AOP A;  4HTR A;  3VM1 A;  4G39 A;  4S3E A;  3MM8 A;  3VKQ A;  3VKT A;  5GEP A;  2XSJ A;  4G9P A;  3MMA A;  3MMB A;  3MM7 A;  5AOP A;  4S3C A;  2V4J B;  3B0L A;  1AOP A;  1ZJ8 A;  3MM9 A;  4S3F A;  3B0G A;  4S3A A;  3OR2 A;  3MMB B;  3MM7 B;  3VKP A;  4GEP A;  2V4J A;  3OR2 B;  4S3D A;  7GEP A;  4S39 A;  3VLZ A;  4AOP A;  3AOP A;  3B0N A;  2AKJ A;  3VLX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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