1ZJRA

Crystal structure of a. aeolicus trmh/spou trna modifying enzyme
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
Knots found
sequence length
197
structure length
197
Chain Sequence
LVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (Guanosine-2'-O-)-methyltransferase
publication title Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 69
structure length 197
sequence length 197
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.34: tRNA (guanosine(18)-2'-O)-methyltransferase.
pdb deposition date 2005-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
A PF12105 SpoU_methylas_C SpoU, rRNA methylase, C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1zjrA00
2EGWA 1NS5A 4X3MA 1V2XA 4CNDA 4YQAA 3OIJA 4RG1A 4E8BA 3BBDA 1UALA 1P9PA 1V6ZA 5GMCA 4YVHA 4YVIA 4JAKA 3AI9X 3IEFA 4YVGA 4YQTA 3L8UA 1UAMA 2QMMA 4YPYA 3ONPA 1VH0A 4YVJA 2YY8A 1NXZA 5CO4A 5GMBA 4YQ3A 4YQRA 3BBHA 4JALA 4CNFA 1X7PA 4YQ9A 4YQPA 3N4KA 5D9FA 4CNGA 3NK6A 3O7BA 4YQDA 4YQ0A 2O3AA 5FAIA 4KDZA 1UAJA 2Z0YA 4KGNA 4MCBA 3AIAA 4YQ4A 2I6DA 4YQQA 4MCCA 1IPAA 3KNUA 4YQIA 3KTYA 1VHYA 4H3YA 4YPZA 1OY5A 4YQOA 1UAKA 3OINA 3IC6A 4YQLA 2HA8A 4YQCA 4L69A 2QWVA 4YPXA 4CNEA 4IG6A 3GYQA 3DCMX 4YQ1A 1K3RA 3NK7A 5GM8A 4YQJA 1MXIA 4YQNA 4YPWA 4YQBA 2CX8A 4X3LA 3AXZA 4YQGA 4YQ8A 3QUVA 1GZ0A 2EGVA 1ZJRA 4YQ7A 4YQ2A 3E5YA 3ILKA 1X7OA 1Z85A 4J3CA 3KW2A 4MCDA 3N4JA 1VHKA 4YQ5A 4YQ6A 4FAKA 4H3ZA 1J85A 2V3JA 4XBOA 4YVKA 3KY7A 3BBEA 1TO0A 4PZKA 4YQSA 1O6DA 4YQKA 2V3KA 3OIIA
chains in the Genus database with same CATH superfamily
2EGWA 1NS5A 4X3MA 1V2XA 4CNDA 4YQAA 3OIJA 4RG1A 4E8BA 3BBDA 1UALA 1P9PA 1V6ZA 5GMCA 4YVHA 4YVIA 4JAKA 3AI9X 3IEFA 4YVGA 4YQTA 3L8UA 1UAMA 2QMMA 4YPYA 3ONPA 1VH0A 4YVJA 2YY8A 1NXZA 5CO4A 5GMBA 4YQ3A 4YQRA 4JWHA 3BBHA 4JALA 4CNFA 1X7PA 4YQ9A 4YQPA 3N4KA 5D9FA 4FMWA 4CNGA 3NK6A 3O7BA 4YQDA 4YQ0A 2O3AA 5FAIA 4JWFA 4KDZA 1UAJA 2Z0YA 4KGNA 4MCBA 3AIAA 4YQ4A 2I6DA 4YQQA 4MCCA 1IPAA 3KNUA 4YQIA 3KTYA 1VHYA 4H3YA 4YPZA 1OY5A 4JWJA 4YQOA 1UAKA 3OINA 3IC6A 4YQLA 2HA8A 4YQCA 4L69A 2QWVA 4YPXA 4JWGA 4CNEA 4IG6A 3GYQA 3DCMX 4YQ1A 1K3RA 3NK7A 5GM8A 4YQJA 1MXIA 4YQNA 4YPWA 4YQBA 2CX8A 4X3LA 3AXZA 4YQGA 4YQ8A 3QUVA 1GZ0A 2EGVA 1ZJRA 4YQ7A 4YQ2A 3E5YA 3ILKA 1X7OA 1Z85A 4J3CA 3KW2A 4MCDA 3N4JA 1VHKA 4YQ5A 4YQ6A 4FAKA 4H3ZA 1J85A 2V3JA 4XBOA 4YVKA 3KY7A 3BBEA 1TO0A 4PZKA 4YQSA 1O6DA 4YQKA 2V3KA 3OIIA
chains in the Genus database with same CATH topology
2EGWA 1NS5A 4X3MA 1V2XA 4CNDA 4YQAA 3OIJA 4RG1A 4E8BA 3BBDA 1UALA 1P9PA 1V6ZA 5GMCA 4YVHA 4YVIA 4JAKA 3AI9X 3IEFA 4YVGA 4YQTA 3L8UA 1UAMA 2QMMA 4YPYA 3ONPA 1VH0A 4YVJA 2YY8A 1NXZA 5CO4A 5GMBA 4YQ3A 4YQRA 4JWHA 3BBHA 4JALA 4CNFA 1X7PA 4YQ9A 4YQPA 3N4KA 5D9FA 4FMWA 4CNGA 3NK6A 3O7BA 4YQDA 4YQ0A 2O3AA 5FAIA 4JWFA 4KDZA 1UAJA 2Z0YA 4KGNA 4MCBA 3AIAA 4YQ4A 2I6DA 4YQQA 4MCCA 1IPAA 3KNUA 4YQIA 3KTYA 1VHYA 4H3YA 4YPZA 1OY5A 4JWJA 4YQOA 1UAKA 3OINA 3IC6A 4YQLA 2HA8A 4YQCA 4L69A 2QWVA 4YPXA 4JWGA 4CNEA 4IG6A 3GYQA 3DCMX 4YQ1A 1K3RA 3NK7A 5GM8A 4YQJA 1MXIA 4YQNA 4YPWA 4YQBA 2CX8A 4X3LA 3AXZA 4YQGA 4YQ8A 3QUVA 1GZ0A 2EGVA 1ZJRA 4YQ7A 4YQ2A 3E5YA 3ILKA 1X7OA 1Z85A 4J3CA 3KW2A 4MCDA 3N4JA 1VHKA 4YQ5A 4YQ6A 4FAKA 4H3ZA 1J85A 2V3JA 4XBOA 4YVKA 3KY7A 3BBEA 1TO0A 4PZKA 4YQSA 1O6DA 4YQKA 2V3KA 3OIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGW A;  1NS5 A;  4X3M A;  1V2X A;  4CND A;  4YQA A;  3OIJ A;  4RG1 A;  4E8B A;  3BBD A;  1UAL A;  1P9P A;  1V6Z A;  5GMC A;  4YVH A;  4YVI A;  4JAK A;  3AI9 X;  3IEF A;  4YVG A;  4YQT A;  3L8U A;  1UAM A;  2QMM A;  4YPY A;  3ONP A;  1VH0 A;  4YVJ A;  2YY8 A;  1NXZ A;  5CO4 A;  5GMB A;  4YQ3 A;  4YQR A;  3BBH A;  4JAL A;  4CNF A;  1X7P A;  4YQ9 A;  4YQP A;  3N4K A;  5D9F A;  4CNG A;  3NK6 A;  3O7B A;  4YQD A;  4YQ0 A;  2O3A A;  5FAI A;  4KDZ A;  1UAJ A;  2Z0Y A;  4KGN A;  4MCB A;  3AIA A;  4YQ4 A;  2I6D A;  4YQQ A;  4MCC A;  1IPA A;  3KNU A;  4YQI A;  3KTY A;  1VHY A;  4H3Y A;  4YPZ A;  1OY5 A;  4YQO A;  1UAK A;  3OIN A;  3IC6 A;  4YQL A;  2HA8 A;  4YQC A;  4L69 A;  2QWV A;  4YPX A;  4CNE A;  4IG6 A;  3GYQ A;  3DCM X;  4YQ1 A;  1K3R A;  3NK7 A;  5GM8 A;  4YQJ A;  1MXI A;  4YQN A;  4YPW A;  4YQB A;  2CX8 A;  4X3L A;  3AXZ A;  4YQG A;  4YQ8 A;  3QUV A;  1GZ0 A;  2EGV A;  1ZJR A;  4YQ7 A;  4YQ2 A;  3E5Y A;  3ILK A;  1X7O A;  1Z85 A;  4J3C A;  3KW2 A;  4MCD A;  3N4J A;  1VHK A;  4YQ5 A;  4YQ6 A;  4FAK A;  4H3Z A;  1J85 A;  2V3J A;  4XBO A;  4YVK A;  3KY7 A;  3BBE A;  1TO0 A;  4PZK A;  4YQS A;  1O6D A;  4YQK A;  2V3K A;  3OII A; 
#chains in the Genus database with same CATH topology
 2EGW A;  1NS5 A;  4X3M A;  1V2X A;  4CND A;  4YQA A;  3OIJ A;  4RG1 A;  4E8B A;  3BBD A;  1UAL A;  1P9P A;  1V6Z A;  5GMC A;  4YVH A;  4YVI A;  4JAK A;  3AI9 X;  3IEF A;  4YVG A;  4YQT A;  3L8U A;  1UAM A;  2QMM A;  4YPY A;  3ONP A;  1VH0 A;  4YVJ A;  2YY8 A;  1NXZ A;  5CO4 A;  5GMB A;  4YQ3 A;  4YQR A;  4JWH A;  3BBH A;  4JAL A;  4CNF A;  1X7P A;  4YQ9 A;  4YQP A;  3N4K A;  5D9F A;  4FMW A;  4CNG A;  3NK6 A;  3O7B A;  4YQD A;  4YQ0 A;  2O3A A;  5FAI A;  4JWF A;  4KDZ A;  1UAJ A;  2Z0Y A;  4KGN A;  4MCB A;  3AIA A;  4YQ4 A;  2I6D A;  4YQQ A;  4MCC A;  1IPA A;  3KNU A;  4YQI A;  3KTY A;  1VHY A;  4H3Y A;  4YPZ A;  1OY5 A;  4JWJ A;  4YQO A;  1UAK A;  3OIN A;  3IC6 A;  4YQL A;  2HA8 A;  4YQC A;  4L69 A;  2QWV A;  4YPX A;  4JWG A;  4CNE A;  4IG6 A;  3GYQ A;  3DCM X;  4YQ1 A;  1K3R A;  3NK7 A;  5GM8 A;  4YQJ A;  1MXI A;  4YQN A;  4YPW A;  4YQB A;  2CX8 A;  4X3L A;  3AXZ A;  4YQG A;  4YQ8 A;  3QUV A;  1GZ0 A;  2EGV A;  1ZJR A;  4YQ7 A;  4YQ2 A;  3E5Y A;  3ILK A;  1X7O A;  1Z85 A;  4J3C A;  3KW2 A;  4MCD A;  3N4J A;  1VHK A;  4YQ5 A;  4YQ6 A;  4FAK A;  4H3Z A;  1J85 A;  2V3J A;  4XBO A;  4YVK A;  3KY7 A;  3BBE A;  1TO0 A;  4PZK A;  4YQS A;  1O6D A;  4YQK A;  2V3K A;  3OII A; 
#chains in the Genus database with same CATH homology
 2EGW A;  1NS5 A;  4X3M A;  1V2X A;  4CND A;  4YQA A;  3OIJ A;  4RG1 A;  4E8B A;  3BBD A;  1UAL A;  1P9P A;  1V6Z A;  5GMC A;  4YVH A;  4YVI A;  4JAK A;  3AI9 X;  3IEF A;  4YVG A;  4YQT A;  3L8U A;  1UAM A;  2QMM A;  4YPY A;  3ONP A;  1VH0 A;  4YVJ A;  2YY8 A;  1NXZ A;  5CO4 A;  5GMB A;  4YQ3 A;  4YQR A;  4JWH A;  3BBH A;  4JAL A;  4CNF A;  1X7P A;  4YQ9 A;  4YQP A;  3N4K A;  5D9F A;  4FMW A;  4CNG A;  3NK6 A;  3O7B A;  4YQD A;  4YQ0 A;  2O3A A;  5FAI A;  4JWF A;  4KDZ A;  1UAJ A;  2Z0Y A;  4KGN A;  4MCB A;  3AIA A;  4YQ4 A;  2I6D A;  4YQQ A;  4MCC A;  1IPA A;  3KNU A;  4YQI A;  3KTY A;  1VHY A;  4H3Y A;  4YPZ A;  1OY5 A;  4JWJ A;  4YQO A;  1UAK A;  3OIN A;  3IC6 A;  4YQL A;  2HA8 A;  4YQC A;  4L69 A;  2QWV A;  4YPX A;  4JWG A;  4CNE A;  4IG6 A;  3GYQ A;  3DCM X;  4YQ1 A;  1K3R A;  3NK7 A;  5GM8 A;  4YQJ A;  1MXI A;  4YQN A;  4YPW A;  4YQB A;  2CX8 A;  4X3L A;  3AXZ A;  4YQG A;  4YQ8 A;  3QUV A;  1GZ0 A;  2EGV A;  1ZJR A;  4YQ7 A;  4YQ2 A;  3E5Y A;  3ILK A;  1X7O A;  1Z85 A;  4J3C A;  3KW2 A;  4MCD A;  3N4J A;  1VHK A;  4YQ5 A;  4YQ6 A;  4FAK A;  4H3Z A;  1J85 A;  2V3J A;  4XBO A;  4YVK A;  3KY7 A;  3BBE A;  1TO0 A;  4PZK A;  4YQS A;  1O6D A;  4YQK A;  2V3K A;  3OII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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