1ZT2A

Heterodimeric structure of the core primase.
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
327
structure length
327
Chain Sequence
TFTLHQGQTNLIKSFFRNYYLNAELELPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEKAWMGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYVMGIGVPGYPGGSENAPGWVGRKNRGINGVTIDEQVTIDVKRLIRIPNSLHGKSGLIVKRVPNLDDFEFNETLSPFTGYTIFLPYITIETEVLGSIIKLNRGIPIKIKSSIGIYLHLRNLGEVKAYV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the heterodimeric core primase.
pubmed doi rcsb
molecule tags Replication, transferase
source organism Sulfolobus solfataricus
molecule keywords DNA primase small subunit
total genus 85
structure length 327
sequence length 327
chains with identical sequence C
ec nomenclature ec 2.7.7.-:
pdb deposition date 2005-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01896 DNA_primase_S DNA primase small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.920.30 Alpha Beta Alpha-Beta Complex DNA primase, PRIM domain DNA primase, PRIM domain 1zt2A00
4LIKA 4MM2A 4RR2A 4BPWA 4LILA 2FAOA 5EXRA 1ZT2A 4BPXA 4MHQA 2FAQA 4BPUA 2FARA 4LIMA
chains in the Genus database with same CATH superfamily
1G71A 2ATZA 4LIKA 4MM2A 4RR2A 4BPWA 4LILA 2FAOA 5EXRA 1ZT2A 4BPXA 4MHQA 2FAQA 1V34A 2FARA 4LIMA 4BPUA 1V33A
chains in the Genus database with same CATH topology
1G71A 4LIKA 4MM2A 4RR2A 4BPWA 4LILA 2FAOA 5EXRA 1ZT2A 4BPXA 4MHQA 2FAQA 1V34A 2FARA 4LIMA 4BPUA 1V33A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LIK A;  4MM2 A;  4RR2 A;  4BPW A;  4LIL A;  2FAO A;  5EXR A;  1ZT2 A;  4BPX A;  4MHQ A;  2FAQ A;  4BPU A;  2FAR A;  4LIM A; 
#chains in the Genus database with same CATH topology
 1G71 A;  2ATZ A;  4LIK A;  4MM2 A;  4RR2 A;  4BPW A;  4LIL A;  2FAO A;  5EXR A;  1ZT2 A;  4BPX A;  4MHQ A;  2FAQ A;  1V34 A;  2FAR A;  4LIM A;  4BPU A;  1V33 A; 
#chains in the Genus database with same CATH homology
 1G71 A;  4LIK A;  4MM2 A;  4RR2 A;  4BPW A;  4LIL A;  2FAO A;  5EXR A;  1ZT2 A;  4BPX A;  4MHQ A;  2FAQ A;  1V34 A;  2FAR A;  4LIM A;  4BPU A;  1V33 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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