1ZUEA

Revised solution structure of dlp-2
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
42
structure length
41
Chain Sequence
IFFEMQACWSHSGVCRDKSERNCKPMAWTYCENRNQKCCEY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title D-amino acid residue in a defensin-like peptide from platypus venom: effect on structure and chromatographic properties.
pubmed doi rcsb
molecule tags Toxin
molecule keywords Defensin-like peptide 2/4
total genus 4
structure length 41
sequence length 42
ec nomenclature
pdb deposition date 2005-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08131 Defensin_3 Defensin-like peptide family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 1zueA00
1SH1A 1AHLA 1ZLIB 1WXNA 1SHIA 2MUBA 1ZUEA 1D6BA 2RNGA 2K2XA 1ZLHB 1ZUFA 2SH1A 2H9XA 2MN3A 1Z99A 1ATXA 2BDSA 3D4UB 1B8WA 1H5OA 3LMSB 4GV5A 1APFA 1WQKA 2JTOA 1BDSA
chains in the Genus database with same CATH superfamily
1SH1A 1AHLA 2JR3A 3C30A 2QSGA 1ZLIB 1WXNA 4YIRA 1SHIA 2MUBA 3C38A 1ZUEA 2IKEA 2XXLA 1D6BA 2HJ9C 2RNGA 1ZHHB 2K2XA 1ZLHB 3KEZA 3IF4A 1ZUFA 1EL6A 3MYVA 1GL9B 2SH1A 2H9XA 2MN3A 1GKUB 1Z99A 2QSHA 1ATXA 2BDSA 3D4UB 2B9KA 2DLAA 1B8WA 2IKDA 1H5OA 2QSFA 2HJEA 3LMSB 4GV5A 1APFA 1WQKA 2JTOA 1BDSA 3MCXA
chains in the Genus database with same CATH topology
1SH1A 1AHLA 2JR3A 3C30A 2QSGA 1ZLIB 1WXNA 4YIRA 1SHIA 2MUBA 3C38A 1ZUEA 2IKEA 2XXLA 1D6BA 2HJ9C 2RNGA 1ZHHB 2K2XA 1ZLHB 3KEZA 1ZUFA 3MYVA 2SH1A 2H9XA 2MN3A 1Z99A 2QSHA 1ATXA 2BDSA 3D4UB 2B9KA 2DLAA 1B8WA 2IKDA 1H5OA 2QSFA 2HJEA 3LMSB 4GV5A 1APFA 1WQKA 2JTOA 1BDSA 3MCXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SH1 A;  1AHL A;  1ZLI B;  1WXN A;  1SHI A;  2MUB A;  1ZUE A;  1D6B A;  2RNG A;  2K2X A;  1ZLH B;  1ZUF A;  2SH1 A;  2H9X A;  2MN3 A;  1Z99 A;  1ATX A;  2BDS A;  3D4U B;  1B8W A;  1H5O A;  3LMS B;  4GV5 A;  1APF A;  1WQK A;  2JTO A;  1BDS A; 
#chains in the Genus database with same CATH topology
 1SH1 A;  1AHL A;  2JR3 A;  3C30 A;  2QSG A;  1ZLI B;  1WXN A;  4YIR A;  1SHI A;  2MUB A;  3C38 A;  1ZUE A;  2IKE A;  2XXL A;  1D6B A;  2HJ9 C;  2RNG A;  1ZHH B;  2K2X A;  1ZLH B;  3KEZ A;  3IF4 A;  1ZUF A;  1EL6 A;  3MYV A;  1GL9 B;  2SH1 A;  2H9X A;  2MN3 A;  1GKU B;  1Z99 A;  2QSH A;  1ATX A;  2BDS A;  3D4U B;  2B9K A;  2DLA A;  1B8W A;  2IKD A;  1H5O A;  2QSF A;  2HJE A;  3LMS B;  4GV5 A;  1APF A;  1WQK A;  2JTO A;  1BDS A;  3MCX A; 
#chains in the Genus database with same CATH homology
 1SH1 A;  1AHL A;  2JR3 A;  3C30 A;  2QSG A;  1ZLI B;  1WXN A;  4YIR A;  1SHI A;  2MUB A;  3C38 A;  1ZUE A;  2IKE A;  2XXL A;  1D6B A;  2HJ9 C;  2RNG A;  1ZHH B;  2K2X A;  1ZLH B;  3KEZ A;  1ZUF A;  3MYV A;  2SH1 A;  2H9X A;  2MN3 A;  1Z99 A;  2QSH A;  1ATX A;  2BDS A;  3D4U B;  2B9K A;  2DLA A;  1B8W A;  2IKD A;  1H5O A;  2QSF A;  2HJE A;  3LMS B;  4GV5 A;  1APF A;  1WQK A;  2JTO A;  1BDS A;  3MCX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...