1ZVPA

Crystal structure of a protein of unknown function vc0802 from vibrio cholerae, possible transport protein
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
130
structure length
128
Chain Sequence
SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein VC0802
publication title The crystal structure of a hypothetical protein VC0802 from Vibrio cholerae
rcsb
source organism Vibrio cholerae
molecule tags Structural genomics, unknown function
total genus 29
structure length 128
sequence length 130
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10000 ACT_3 ACT domain
A PF13840 ACT_7 ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 1zvpA00
1ZVPA 3AB2A 3C1MA 3C20A 3C1NA 1ZHVA 2HMFA 2F06A 3AAWA 3TVIA 3AB4A
chains in the Genus database with same CATH superfamily
3V8VA 4KR9A 3TLJA 2C5SA 2HMFA 3TMAA 3LDUA 3TVIA 3K0BA 4KR7A 1ZVPA 3AB2A 3C1MA 3C20A 3LDGA 3C1NA 1ZHVA 3TM4A 2F06A 3AAWA 4KR6A 3AB4A 3TM5A 3V97A
chains in the Genus database with same CATH topology
3V8VA 4KR9A 3TLJA 2C5SA 2HMFA 3TMAA 3LDUA 3TVIA 3K0BA 4KR7A 1ZVPA 3AB2A 3C1MA 3C20A 3LDGA 3C1NA 1ZHVA 3TM4A 2F06A 3AAWA 4KR6A 3AB4A 3TM5A 3V97A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZVP A;  3AB2 A;  3C1M A;  3C20 A;  3C1N A;  1ZHV A;  2HMF A;  2F06 A;  3AAW A;  3TVI A;  3AB4 A; 
#chains in the Genus database with same CATH topology
 3V8V A;  4KR9 A;  3TLJ A;  2C5S A;  2HMF A;  3TMA A;  3LDU A;  3TVI A;  3K0B A;  4KR7 A;  1ZVP A;  3AB2 A;  3C1M A;  3C20 A;  3LDG A;  3C1N A;  1ZHV A;  3TM4 A;  2F06 A;  3AAW A;  4KR6 A;  3AB4 A;  3TM5 A;  3V97 A; 
#chains in the Genus database with same CATH homology
 3V8V A;  4KR9 A;  3TLJ A;  2C5S A;  2HMF A;  3TMA A;  3LDU A;  3TVI A;  3K0B A;  4KR7 A;  1ZVP A;  3AB2 A;  3C1M A;  3C20 A;  3LDG A;  3C1N A;  1ZHV A;  3TM4 A;  2F06 A;  3AAW A;  4KR6 A;  3AB4 A;  3TM5 A;  3V97 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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