1ZWOA

Nmr structure of murine gamma-s crystallin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
177
structure length
177
Chain Sequence
SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Gamma crystallin S
publication title Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR.
pubmed doi rcsb
source organism Mus musculus
total genus 26
structure length 177
sequence length 177
ec nomenclature
pdb deposition date 2005-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zwoA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zwoA01
2JDFA 1HDFA 1GAMA 4PSRA 1YHPA 4W9AA 1E7NA 2B1OA 3SNZA 3CW3A 5HT8A 1ZGTA 3IAJA 2KFBA 1H4AX 1A7HA 1BLBA 1ZIRA 1A5DA 4GCRA 2BV2A 2M3CA 4IAUA 1DSLA 2M3UA 1BD7A 1YTQA 3I9HA 3ENTA 2A5MA 1A45A 4AKAA 4FD9A 1NPSA 1ELPA 3ENUA 4JGFA 3SO1A 3SO0A 2G98A 4EL6A 3HZBA 5HT9A 1OKIA 1ZWOA 3QK3A 4GR7A 3LWKA 2BB2A 4NI3A 2K1WA 1AG4A 3SNYA 1ZIEA 2V2UA 2DADA 1HK0X 2NBRA 2JDGA 2K1XA 3HZ2A 2M3TA 4PSPA 1ZWMA 1GCSA 1PRRA 1ZIQA 4W9BA 1HA4A 1AMMA 1PRSA 2KP5A 1I5IA 1M8UA
chains in the Genus database with same CATH superfamily
1E7NA 3IAJA 2KFBA 1H4AX 1ZIRA 4GCRA 2BV2A 1A45A 3ENUA 3SO0A 1ZWOA 2BB2A 1AG4A 2V2UA 1F53A 1ZWMA 1I5IA 4PSRA 4W9AA 2B1OA 3CW3A 1BLBA 2M3UA 1YTQA 4AKAA 3SO1A 4EL6A 1OKIA 3QK3A 3LWKA 4NI3A 2NBRA 2JDGA 3HZ2A 2M3TA 1ZIQA 1AMMA 2JDFA 1GAMA 1YHPA 3SNZA 5HT8A 1A7HA 1G6EA 1A5DA 4IAUA 2A5MA 1C01A 1WKTA 3SNYA 1HK0X 4PSPA 1PRSA 3UJZA 1HDFA 2M3CA 1DSLA 1BD7A 3I9HA 3ENTA 4FD9A 1NPSA 1ELPA 1GH5A 4JGFA 2G98A 5HT9A 3HZBA 4GR7A 2K1WA 1ZIEA 2DADA 2K1XA 1GCSA 1PRRA 4W9BA 1HA4A 1BHUA 2KP5A 1ZGTA 1M8UA
chains in the Genus database with same CATH topology
2JDFA 1HDFA 1GAMA 4PSRA 1YHPA 4W9AA 1E7NA 2B1OA 3SNZA 3CW3A 5HT8A 1ZGTA 3IAJA 2KFBA 1H4AX 1A7HA 1BLBA 1ZIRA 1A5DA 4GCRA 2BV2A 2M3CA 4IAUA 1DSLA 2M3UA 1BD7A 1YTQA 3I9HA 3ENTA 2A5MA 1A45A 4AKAA 4FD9A 1NPSA 1ELPA 3ENUA 4JGFA 3SO1A 3SO0A 2G98A 4EL6A 3HZBA 5HT9A 1OKIA 1ZWOA 3QK3A 4GR7A 3LWKA 2BB2A 4NI3A 2K1WA 1AG4A 3SNYA 1ZIEA 2V2UA 2DADA 1HK0X 2NBRA 2JDGA 2K1XA 3HZ2A 2M3TA 4PSPA 1ZWMA 1GCSA 1PRRA 1ZIQA 4W9BA 1HA4A 1AMMA 1PRSA 2KP5A 1I5IA 1M8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JDF A;  1HDF A;  1GAM A;  4PSR A;  1YHP A;  4W9A A;  1E7N A;  2B1O A;  3SNZ A;  3CW3 A;  5HT8 A;  1ZGT A;  3IAJ A;  2KFB A;  1H4A X;  1A7H A;  1BLB A;  1ZIR A;  1A5D A;  4GCR A;  2BV2 A;  2M3C A;  4IAU A;  1DSL A;  2M3U A;  1BD7 A;  1YTQ A;  3I9H A;  3ENT A;  2A5M A;  1A45 A;  4AKA A;  4FD9 A;  1NPS A;  1ELP A;  3ENU A;  4JGF A;  3SO1 A;  3SO0 A;  2G98 A;  4EL6 A;  3HZB A;  5HT9 A;  1OKI A;  1ZWO A;  3QK3 A;  4GR7 A;  3LWK A;  2BB2 A;  4NI3 A;  2K1W A;  1AG4 A;  3SNY A;  1ZIE A;  2V2U A;  2DAD A;  1HK0 X;  2NBR A;  2JDG A;  2K1X A;  3HZ2 A;  2M3T A;  4PSP A;  1ZWM A;  1GCS A;  1PRR A;  1ZIQ A;  4W9B A;  1HA4 A;  1AMM A;  1PRS A;  2KP5 A;  1I5I A;  1M8U A; 
#chains in the Genus database with same CATH topology
 1E7N A;  3IAJ A;  2KFB A;  1H4A X;  1ZIR A;  4GCR A;  2BV2 A;  1A45 A;  3ENU A;  3SO0 A;  1ZWO A;  2BB2 A;  1AG4 A;  2V2U A;  1F53 A;  1ZWM A;  1I5I A;  4PSR A;  4W9A A;  2B1O A;  3CW3 A;  1BLB A;  2M3U A;  1YTQ A;  4AKA A;  3SO1 A;  4EL6 A;  1OKI A;  3QK3 A;  3LWK A;  4NI3 A;  2NBR A;  2JDG A;  3HZ2 A;  2M3T A;  1ZIQ A;  1AMM A;  2JDF A;  1GAM A;  1YHP A;  3SNZ A;  5HT8 A;  1A7H A;  1G6E A;  1A5D A;  4IAU A;  2A5M A;  1C01 A;  1WKT A;  3SNY A;  1HK0 X;  4PSP A;  1PRS A;  3UJZ A;  1HDF A;  2M3C A;  1DSL A;  1BD7 A;  3I9H A;  3ENT A;  4FD9 A;  1NPS A;  1ELP A;  1GH5 A;  4JGF A;  2G98 A;  5HT9 A;  3HZB A;  4GR7 A;  2K1W A;  1ZIE A;  2DAD A;  2K1X A;  1GCS A;  1PRR A;  4W9B A;  1HA4 A;  1BHU A;  2KP5 A;  1ZGT A;  1M8U A; 
#chains in the Genus database with same CATH homology
 2JDF A;  1HDF A;  1GAM A;  4PSR A;  1YHP A;  4W9A A;  1E7N A;  2B1O A;  3SNZ A;  3CW3 A;  5HT8 A;  1ZGT A;  3IAJ A;  2KFB A;  1H4A X;  1A7H A;  1BLB A;  1ZIR A;  1A5D A;  4GCR A;  2BV2 A;  2M3C A;  4IAU A;  1DSL A;  2M3U A;  1BD7 A;  1YTQ A;  3I9H A;  3ENT A;  2A5M A;  1A45 A;  4AKA A;  4FD9 A;  1NPS A;  1ELP A;  3ENU A;  4JGF A;  3SO1 A;  3SO0 A;  2G98 A;  4EL6 A;  3HZB A;  5HT9 A;  1OKI A;  1ZWO A;  3QK3 A;  4GR7 A;  3LWK A;  2BB2 A;  4NI3 A;  2K1W A;  1AG4 A;  3SNY A;  1ZIE A;  2V2U A;  2DAD A;  1HK0 X;  2NBR A;  2JDG A;  2K1X A;  3HZ2 A;  2M3T A;  4PSP A;  1ZWM A;  1GCS A;  1PRR A;  1ZIQ A;  4W9B A;  1HA4 A;  1AMM A;  1PRS A;  2KP5 A;  1I5I A;  1M8U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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