1ZYMA

Amino terminal domain of enzyme i from escherichia coli
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
247
structure length
247
Chain Sequence
SGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords ENZYME I
publication title The first step in sugar transport: crystal structure of the amino terminal domain of enzyme I of the E. coli PEP: sugar phosphotransferase system and a model of the phosphotransfer complex with HPr.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Phosphotransferase
total genus 80
structure length 247
sequence length 247
chains with identical sequence B
ec nomenclature ec 2.7.3.9: Phosphoenolpyruvate--protein phosphotransferase.
pdb deposition date 1996-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00391 PEP-utilizers PEP-utilising enzyme, mobile domain
A PF05524 PEP-utilisers_N PEP-utilising enzyme, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.10 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 PtsI, HPr-binding domain 1zymA02
3.50.30.10 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Phosphohistidine domain 1zymA01
1GGOA 3EZEA 1VBGA 1EZAA 2MP0A 2DIKA 2OLSA 2HROA 3T05A 2EZAA 2HWGA 5JVLA 1VBHA 2EZCA 3T07A 1KC7A 3T0TA 2X0SA 2HI6A 1DIKA 2E28A 1ZYMA 3EZAA 3EZBA 2R82A 2FM4A 1KBLA 2EZBA 1JDEA 1EZBA
chains in the Genus database with same CATH superfamily
2N1DB 2NVXA 2MX8A 3TLGB 2LTHA 3SJEA 4E5SA 3TYXA 4CQ5A 2A6ED 2PVWA 3NZ4A 1Q5XA 4P45A 5F5XA 3T5MA 4C86A 1Y1VA 3FKIA 4E94A 3EZAA 2VUMA 2R82A 2YJVA 4C9VA 1K83A 4OMEA 3D7DA 2C6PA 3T05A 4NGSA 4COBA 4C2MA 4JYWA 2HWGA 1VI4A 2LYIA 1I6VD 3T07A 2E2IA 1NBWA 2C6CA 4INJA 2E2HA 1I3QA 3D7FA 4BABA 3BI1A 1CE8B 3BI0A 3LR2A 1IW7D 4QIWA 5IB9A 3BHXA 2EK9A 5ELYA 4P4EA 3K4IA 1V6CA 4NGNA 2FM4A 2R7ZA 4MCQA 2C5QA 2XEGA 2C6GA 1CS0B 3I74A 3FEDA 4OC5A 3KASA 2EK8A 1VBHA 2EZCA 2OOTA 4C8TA 4C9AA 2NVYA 3C8OA 4COGA 1R61A 4P4FA 1GGOA 3H0GA 3EZEA 2PVVA 2D0OA 2DIKA 4NGMA 2OLSA 2A69D 2PCNA 1DE4C 2YIIA 1DIKA 2YJTA 2XEJA 3S9MA 4NGQA 3GTMA 1SFOA 5FD8A 2FIPA 4C84A 4EYSA 3SJGA 4C5RA 1T36B 4IIXA 3T0TA 2HI6A 4P44A 1W27A 3EIFA 4CEIA 2EZBA 1CX8A 4MCPA 3GTOA 1JDBC 5F09A 2N3EA 4OC4A 4MCRA 2GP4A 2EZAA 1TWHA 3CQZA 4NGPA 5K99A 2JA6A 4FBSA 3TLAA 1KEEB 2X0PA 2JA7A 3S9LA 2LPIA 1C3OB 3EZBA 4C8CA 3GJZA 1JDEA 3GTGA 1TWGA 4M8DA 3U4QA 2JBJA 4TJXA 3RBUA 5IR2A 3FEEA 4H1HA 4JZ0A 1Y9ZA 4OC3A 3LR6A 4TJVA 4NGTA 4MJXA 2K3OA 1T6JA 1EZBA 2MX9A 4OC0A 4V2QA 2MP0A 2VK9A 3TLBA 1J3LA 4TWEA 1TWAA 3GTLA 3D7GA 4MCSA 2CIJA 3GTJA 2AUMA 1TWFA 3IWWA 4LQGA 2R92A 4C5SA 1NXJA 1YNND 2OR4A 2FIOA 1Z8LA 2AUNA 3TLGA 3BXMA 3TLEA 5JYBA 4P4IA 2XEFA 2R93A 4OC2A 1ZL0A 2K3QA 4C99A 4P4DA 3GTQA 4C85A 1Y2MA 3GTKA 4C8UA 2LKMB 2B63A 4CO9A 1ZYRD 1M6VB 1ZYMA 2AQLA 4C8FA 1T6PA 4JVOA 4V2RA 5D29A 1HQMD 4BAAA 5F9MA 1VBGA 4X3RA 2X0OA 3FECA 4J0NA 2O5JD 1BXRB 2F5JA 2A6HD 3FF3A 2X0SA 4P4JA 3TLZA 2MQAA 2BE5D 4W9YA 4C8AA 3GTPA 2XEIA 4YN3A 3LR8A 4IIYA 4CEHA 1ZRSA 3ICUA 2HROA 4OC1A 1WVMA 1TWCA 1KC7A 1SMYD 3LRDA 2E28A 2JA5A 3IIBA 1I50A 4C6GA 3I6SA 2JBKA 5JVLA 2K3NA 1YNJD 3U1BA 1XF1A 4P4BA 1R9TA 3TLYA 4KNGE 3TLCA 4CZ1A 2X0QA 4MI1A 1EZAA 4C9UA 1Y1WA 2D0PA 4C5UA 2LPJA 3G23A 4CDKA 4C9RA 3U44A 3SR3A 4CEJA 5F1YA 3SJXA 1KBLA 3KRVA 2B0AA 1C30B 3D7HA 2CW0D 1A9XB 4NGRA 4C9EA 2Y0NA 4C8PA 4CDJA 3S9NA 3K9TA 5IZ2A 2YU9A 3SJFA 3NOJA 3VTAA 2A68D 1WCMA
chains in the Genus database with same CATH topology
1GGOA 3EZEA 1VBGA 1EZAA 2MP0A 2DIKA 2OLSA 2HROA 3T05A 2EZAA 2HWGA 5JVLA 1VBHA 2EZCA 3T07A 1KC7A 3T0TA 2X0SA 2HI6A 1DIKA 2E28A 1ZYMA 3EZAA 3EZBA 2R82A 2FM4A 1KBLA 2EZBA 1JDEA 1EZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GGO A;  3EZE A;  1VBG A;  1EZA A;  2MP0 A;  2DIK A;  2OLS A;  2HRO A;  3T05 A;  2EZA A;  2HWG A;  5JVL A;  1VBH A;  2EZC A;  3T07 A;  1KC7 A;  3T0T A;  2X0S A;  2HI6 A;  1DIK A;  2E28 A;  1ZYM A;  3EZA A;  3EZB A;  2R82 A;  2FM4 A;  1KBL A;  2EZB A;  1JDE A;  1EZB A; 
#chains in the Genus database with same CATH topology
 2N1D B;  2NVX A;  2MX8 A;  3TLG B;  2LTH A;  3SJE A;  4E5S A;  3TYX A;  4CQ5 A;  2A6E D;  2PVW A;  3NZ4 A;  1Q5X A;  4P45 A;  5F5X A;  3T5M A;  4C86 A;  1Y1V A;  3FKI A;  4E94 A;  3EZA A;  2VUM A;  2R82 A;  2YJV A;  4C9V A;  1K83 A;  4OME A;  3D7D A;  2C6P A;  3T05 A;  4NGS A;  4COB A;  4C2M A;  4JYW A;  2HWG A;  1VI4 A;  2LYI A;  1I6V D;  3T07 A;  2E2I A;  1NBW A;  2C6C A;  4INJ A;  2E2H A;  1I3Q A;  3D7F A;  4BAB A;  3BI1 A;  1CE8 B;  3BI0 A;  3LR2 A;  1IW7 D;  4QIW A;  5IB9 A;  3BHX A;  2EK9 A;  5ELY A;  4P4E A;  3K4I A;  1V6C A;  4NGN A;  2FM4 A;  2R7Z A;  4MCQ A;  2C5Q A;  2XEG A;  2C6G A;  1CS0 B;  3I74 A;  3FED A;  4OC5 A;  3KAS A;  2EK8 A;  1VBH A;  2EZC A;  2OOT A;  4C8T A;  4C9A A;  2NVY A;  3C8O A;  4COG A;  1R61 A;  4P4F A;  1GGO A;  3H0G A;  3EZE A;  2PVV A;  2D0O A;  2DIK A;  4NGM A;  2OLS A;  2A69 D;  2PCN A;  1DE4 C;  2YII A;  1DIK A;  2YJT A;  2XEJ A;  3S9M A;  4NGQ A;  3GTM A;  1SFO A;  5FD8 A;  2FIP A;  4C84 A;  4EYS A;  3SJG A;  4C5R A;  1T36 B;  4IIX A;  3T0T A;  2HI6 A;  4P44 A;  1W27 A;  3EIF A;  4CEI A;  2EZB A;  1CX8 A;  4MCP A;  3GTO A;  1JDB C;  5F09 A;  2N3E A;  4OC4 A;  4MCR A;  2GP4 A;  2EZA A;  1TWH A;  3CQZ A;  4NGP A;  5K99 A;  2JA6 A;  4FBS A;  3TLA A;  1KEE B;  2X0P A;  2JA7 A;  3S9L A;  2LPI A;  1C3O B;  3EZB A;  4C8C A;  3GJZ A;  1JDE A;  3GTG A;  1TWG A;  4M8D A;  3U4Q A;  2JBJ A;  4TJX A;  3RBU A;  5IR2 A;  3FEE A;  4H1H A;  4JZ0 A;  1Y9Z A;  4OC3 A;  3LR6 A;  4TJV A;  4NGT A;  4MJX A;  2K3O A;  1T6J A;  1EZB A;  2MX9 A;  4OC0 A;  4V2Q A;  2MP0 A;  2VK9 A;  3TLB A;  1J3L A;  4TWE A;  1TWA A;  3GTL A;  3D7G A;  4MCS A;  2CIJ A;  3GTJ A;  2AUM A;  1TWF A;  3IWW A;  4LQG A;  2R92 A;  4C5S A;  1NXJ A;  1YNN D;  2OR4 A;  2FIO A;  1Z8L A;  2AUN A;  3TLG A;  3BXM A;  3TLE A;  5JYB A;  4P4I A;  2XEF A;  2R93 A;  4OC2 A;  1ZL0 A;  2K3Q A;  4C99 A;  4P4D A;  3GTQ A;  4C85 A;  1Y2M A;  3GTK A;  4C8U A;  2LKM B;  2B63 A;  4CO9 A;  1ZYR D;  1M6V B;  1ZYM A;  2AQL A;  4C8F A;  1T6P A;  4JVO A;  4V2R A;  5D29 A;  1HQM D;  4BAA A;  5F9M A;  1VBG A;  4X3R A;  2X0O A;  3FEC A;  4J0N A;  2O5J D;  1BXR B;  2F5J A;  2A6H D;  3FF3 A;  2X0S A;  4P4J A;  3TLZ A;  2MQA A;  2BE5 D;  4W9Y A;  4C8A A;  3GTP A;  2XEI A;  4YN3 A;  3LR8 A;  4IIY A;  4CEH A;  1ZRS A;  3ICU A;  2HRO A;  4OC1 A;  1WVM A;  1TWC A;  1KC7 A;  1SMY D;  3LRD A;  2E28 A;  2JA5 A;  3IIB A;  1I50 A;  4C6G A;  3I6S A;  2JBK A;  5JVL A;  2K3N A;  1YNJ D;  3U1B A;  1XF1 A;  4P4B A;  1R9T A;  3TLY A;  4KNG E;  3TLC A;  4CZ1 A;  2X0Q A;  4MI1 A;  1EZA A;  4C9U A;  1Y1W A;  2D0P A;  4C5U A;  2LPJ A;  3G23 A;  4CDK A;  4C9R A;  3U44 A;  3SR3 A;  4CEJ A;  5F1Y A;  3SJX A;  1KBL A;  3KRV A;  2B0A A;  1C30 B;  3D7H A;  2CW0 D;  1A9X B;  4NGR A;  4C9E A;  2Y0N A;  4C8P A;  4CDJ A;  3S9N A;  3K9T A;  5IZ2 A;  2YU9 A;  3SJF A;  3NOJ A;  3VTA A;  2A68 D;  1WCM A; 
#chains in the Genus database with same CATH homology
 1GGO A;  3EZE A;  1VBG A;  1EZA A;  2MP0 A;  2DIK A;  2OLS A;  2HRO A;  3T05 A;  2EZA A;  2HWG A;  5JVL A;  1VBH A;  2EZC A;  3T07 A;  1KC7 A;  3T0T A;  2X0S A;  2HI6 A;  1DIK A;  2E28 A;  1ZYM A;  3EZA A;  3EZB A;  2R82 A;  2FM4 A;  1KBL A;  2EZB A;  1JDE A;  1EZB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...