The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
80
|
sequence length |
247
|
structure length |
247
|
Chain Sequence |
SGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
ENZYME I
|
| publication title |
The first step in sugar transport: crystal structure of the amino terminal domain of enzyme I of the E. coli PEP: sugar phosphotransferase system and a model of the phosphotransfer complex with HPr.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| molecule tags |
Phosphotransferase
|
| total genus |
80
|
| structure length |
247
|
| sequence length |
247
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.7.3.9: Phosphoenolpyruvate--protein phosphotransferase. |
| pdb deposition date | 1996-05-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00391 | PEP-utilizers | PEP-utilising enzyme, mobile domain |
| A | PF05524 | PEP-utilisers_N | PEP-utilising enzyme, N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Enzyme I; Chain A, domain 2 | PtsI, HPr-binding domain | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Phosphohistidine domain |
#chains in the Genus database with same CATH superfamily 1GGO A; 3EZE A; 1VBG A; 1EZA A; 2MP0 A; 2DIK A; 2OLS A; 2HRO A; 3T05 A; 2EZA A; 2HWG A; 5JVL A; 1VBH A; 2EZC A; 3T07 A; 1KC7 A; 3T0T A; 2X0S A; 2HI6 A; 1DIK A; 2E28 A; 1ZYM A; 3EZA A; 3EZB A; 2R82 A; 2FM4 A; 1KBL A; 2EZB A; 1JDE A; 1EZB A; #chains in the Genus database with same CATH topology 2N1D B; 2NVX A; 2MX8 A; 3TLG B; 2LTH A; 3SJE A; 4E5S A; 3TYX A; 4CQ5 A; 2A6E D; 2PVW A; 3NZ4 A; 1Q5X A; 4P45 A; 5F5X A; 3T5M A; 4C86 A; 1Y1V A; 3FKI A; 4E94 A; 3EZA A; 2VUM A; 2R82 A; 2YJV A; 4C9V A; 1K83 A; 4OME A; 3D7D A; 2C6P A; 3T05 A; 4NGS A; 4COB A; 4C2M A; 4JYW A; 2HWG A; 1VI4 A; 2LYI A; 1I6V D; 3T07 A; 2E2I A; 1NBW A; 2C6C A; 4INJ A; 2E2H A; 1I3Q A; 3D7F A; 4BAB A; 3BI1 A; 1CE8 B; 3BI0 A; 3LR2 A; 1IW7 D; 4QIW A; 5IB9 A; 3BHX A; 2EK9 A; 5ELY A; 4P4E A; 3K4I A; 1V6C A; 4NGN A; 2FM4 A; 2R7Z A; 4MCQ A; 2C5Q A; 2XEG A; 2C6G A; 1CS0 B; 3I74 A; 3FED A; 4OC5 A; 3KAS A; 2EK8 A; 1VBH A; 2EZC A; 2OOT A; 4C8T A; 4C9A A; 2NVY A; 3C8O A; 4COG A; 1R61 A; 4P4F A; 1GGO A; 3H0G A; 3EZE A; 2PVV A; 2D0O A; 2DIK A; 4NGM A; 2OLS A; 2A69 D; 2PCN A; 1DE4 C; 2YII A; 1DIK A; 2YJT A; 2XEJ A; 3S9M A; 4NGQ A; 3GTM A; 1SFO A; 5FD8 A; 2FIP A; 4C84 A; 4EYS A; 3SJG A; 4C5R A; 1T36 B; 4IIX A; 3T0T A; 2HI6 A; 4P44 A; 1W27 A; 3EIF A; 4CEI A; 2EZB A; 1CX8 A; 4MCP A; 3GTO A; 1JDB C; 5F09 A; 2N3E A; 4OC4 A; 4MCR A; 2GP4 A; 2EZA A; 1TWH A; 3CQZ A; 4NGP A; 5K99 A; 2JA6 A; 4FBS A; 3TLA A; 1KEE B; 2X0P A; 2JA7 A; 3S9L A; 2LPI A; 1C3O B; 3EZB A; 4C8C A; 3GJZ A; 1JDE A; 3GTG A; 1TWG A; 4M8D A; 3U4Q A; 2JBJ A; 4TJX A; 3RBU A; 5IR2 A; 3FEE A; 4H1H A; 4JZ0 A; 1Y9Z A; 4OC3 A; 3LR6 A; 4TJV A; 4NGT A; 4MJX A; 2K3O A; 1T6J A; 1EZB A; 2MX9 A; 4OC0 A; 4V2Q A; 2MP0 A; 2VK9 A; 3TLB A; 1J3L A; 4TWE A; 1TWA A; 3GTL A; 3D7G A; 4MCS A; 2CIJ A; 3GTJ A; 2AUM A; 1TWF A; 3IWW A; 4LQG A; 2R92 A; 4C5S A; 1NXJ A; 1YNN D; 2OR4 A; 2FIO A; 1Z8L A; 2AUN A; 3TLG A; 3BXM A; 3TLE A; 5JYB A; 4P4I A; 2XEF A; 2R93 A; 4OC2 A; 1ZL0 A; 2K3Q A; 4C99 A; 4P4D A; 3GTQ A; 4C85 A; 1Y2M A; 3GTK A; 4C8U A; 2LKM B; 2B63 A; 4CO9 A; 1ZYR D; 1M6V B; 1ZYM A; 2AQL A; 4C8F A; 1T6P A; 4JVO A; 4V2R A; 5D29 A; 1HQM D; 4BAA A; 5F9M A; 1VBG A; 4X3R A; 2X0O A; 3FEC A; 4J0N A; 2O5J D; 1BXR B; 2F5J A; 2A6H D; 3FF3 A; 2X0S A; 4P4J A; 3TLZ A; 2MQA A; 2BE5 D; 4W9Y A; 4C8A A; 3GTP A; 2XEI A; 4YN3 A; 3LR8 A; 4IIY A; 4CEH A; 1ZRS A; 3ICU A; 2HRO A; 4OC1 A; 1WVM A; 1TWC A; 1KC7 A; 1SMY D; 3LRD A; 2E28 A; 2JA5 A; 3IIB A; 1I50 A; 4C6G A; 3I6S A; 2JBK A; 5JVL A; 2K3N A; 1YNJ D; 3U1B A; 1XF1 A; 4P4B A; 1R9T A; 3TLY A; 4KNG E; 3TLC A; 4CZ1 A; 2X0Q A; 4MI1 A; 1EZA A; 4C9U A; 1Y1W A; 2D0P A; 4C5U A; 2LPJ A; 3G23 A; 4CDK A; 4C9R A; 3U44 A; 3SR3 A; 4CEJ A; 5F1Y A; 3SJX A; 1KBL A; 3KRV A; 2B0A A; 1C30 B; 3D7H A; 2CW0 D; 1A9X B; 4NGR A; 4C9E A; 2Y0N A; 4C8P A; 4CDJ A; 3S9N A; 3K9T A; 5IZ2 A; 2YU9 A; 3SJF A; 3NOJ A; 3VTA A; 2A68 D; 1WCM A; #chains in the Genus database with same CATH homology 1GGO A; 3EZE A; 1VBG A; 1EZA A; 2MP0 A; 2DIK A; 2OLS A; 2HRO A; 3T05 A; 2EZA A; 2HWG A; 5JVL A; 1VBH A; 2EZC A; 3T07 A; 1KC7 A; 3T0T A; 2X0S A; 2HI6 A; 1DIK A; 2E28 A; 1ZYM A; 3EZA A; 3EZB A; 2R82 A; 2FM4 A; 1KBL A; 2EZB A; 1JDE A; 1EZB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
