1ZYMA

Amino terminal domain of enzyme i from escherichia coli
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
247
structure length
247
Chain Sequence
SGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphotransferase
source organism Escherichia coli
publication title The first step in sugar transport: crystal structure of the amino terminal domain of enzyme I of the E. coli PEP: sugar phosphotransferase system and a model of the phosphotransfer complex with HPr.
pubmed doi rcsb
molecule keywords ENZYME I
total genus 80
structure length 247
sequence length 247
chains with identical sequence B
ec nomenclature ec 2.7.3.9: Phosphoenolpyruvate--protein phosphotransferase.
pdb deposition date 1996-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00391 PEP-utilizers PEP-utilising enzyme, mobile domain
A PF05524 PEP-utilisers_N PEP-utilising enzyme, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.10 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 PtsI, HPr-binding domain 1zymA02
3.50.30.10 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Phosphohistidine domain 1zymA01
2EZBA 2HI6A 3EZBA 1VBHA 1GGOA 1KBLA 2OLSA 1JDEA 2MP0A 3T07A 1ZYMA 2HWGA 2E28A 2FM4A 1KC7A 1DIKA 1EZBA 2EZCA 2X0SA 2HROA 3T0TA 3T05A 2R82A 1VBGA 3EZEA 2DIKA 3EZAA 2EZAA 1EZAA 5JVLA
chains in the Genus database with same CATH superfamily
3H0GA 3EZBA 1VBHA 5F1YA 1JDEA 3TLAA 2A68D 1ZRSA 3VTAA 5IZ2A 4P4BA 1TWFA 3GTLA 2LYIA 1VBGA 2XEJA 4NGNA 3EZAA 1W27A 2JA5A 1CE8B 4C86A 3SJXA 2N3EA 3BHXA 2YJTA 3T5MA 3TLGB 2EZCA 4C8AA 4MCSA 2EZAA 1TWHA 1XF1A 4C8FA 3C8OA 2AUMA 2EK8A 4CEHA 1ZYRD 4BABA 4C9RA 4C2MA 2E2HA 4C9AA 2R93A 4TJXA 4C9VA 1KEEB 2C6PA 2JBKA 4OC0A 2YJVA 2OLSA 1BXRB 3BI1A 2VUMA 2E2IA 1YNND 1C30B 4OC2A 4CZ1A 4E94A 1I50A 3U1BA 4V2RA 4JYWA 2CIJA 4C9EA 2NVXA 2PCNA 4CEIA 3TLYA 2MP0A 4P45A 3K4IA 1KC7A 2YIIA 1CX8A 4NGRA 3KRVA 3T05A 3D7HA 4CDJA 2A6HD 2XEGA 1I6VD 4C8UA 3GTQA 2D0PA 1T6PA 2X0QA 1CS0B 1JDBC 3GTMA 4IIXA 4C5RA 1M6VB 3S9MA 2B0AA 2XEFA 1TWGA 1Y9ZA 4P4EA 3NZ4A 4NGQA 3T0TA 3EZEA 3S9NA 4LQGA 1HQMD 4C85A 2LKMB 2CW0D 2LPJA 4TWEA 4MI1A 4NGMA 3LR2A 4C8TA 1R9TA 3BXMA 2X0OA 2X0PA 1Z8LA 2C6CA 3D7GA 2HROA 4M8DA 4NGTA 2F5JA 2VK9A 2LTHA 2N1DB 5JVLA 1WCMA 5FD8A 1Y1VA 3TLCA 4C5UA 1TWCA 1A9XB 3BI0A 3T07A 3GTKA 4MCPA 4OC5A 4C9UA 4C99A 2EK9A 5K99A 1K83A 3NOJA 3TLEA 2FIOA 2PVWA 1I3QA 3D7FA 4MCQA 3SJFA 4C5SA 5F9MA 1IW7D 3FECA 2R92A 4P4FA 4E5SA 2FM4A 4C8CA 1TWAA 2OOTA 2X0SA 1Y2MA 3TLGA 3G23A 3FEEA 4QIWA 1WVMA 5F09A 3KASA 2FIPA 1GGOA 3EIFA 1C3OB 3TYXA 2DIKA 1SFOA 4OC3A 4CDKA 3SJGA 2B63A 2EZBA 3TLBA 1Q5XA 2C6GA 3GTPA 2C5QA 3LRDA 4V2QA 2MX8A 3SJEA 2HWGA 2E28A 1NXJA 2JBJA 1DIKA 3FF3A 3IIBA 5IR2A 1R61A 2JA6A 2XEIA 3U4QA 4EYSA 2R82A 4YN3A 2K3QA 4KNGE 4OC4A 2PVVA 2D0OA 4JZ0A 1Y1WA 3GTOA 4P4JA 4TJVA 4W9YA 2GP4A 4C8PA 4NGSA 4NGPA 3D7DA 4JVOA 2A69D 1EZAA 4CQ5A 4C6GA 4P4IA 3S9LA 3U44A 2MX9A 4P44A 5D29A 4COBA 3FKIA 2K3NA 4MCRA 3GTJA 4C84A 2Y0NA 4CEJA 3IWWA 3I6SA 4INJA 1VI4A 5F5XA 5ELYA 1T36B 2HI6A 2A6ED 4OC1A 3K9TA 2YU9A 3ICUA 4OMEA 4CO9A 5JYBA 5IB9A 1YNJD 3GJZA 4J0NA 1DE4C 2MQAA 1ZYMA 3LR6A 1J3LA 1EZBA 3CQZA 2LPIA 4H1HA 3GTGA 2K3OA 1SMYD 2O5JD 4FBSA 2AUNA 1V6CA 3LR8A 4X3RA 2BE5D 4IIYA 4COGA 4BAAA 3TLZA 3I74A 1T6JA 2R7ZA 4P4DA 2JA7A 3FEDA 2OR4A 2AQLA 1NBWA 2NVYA 1ZL0A 4MJXA 3RBUA 3SR3A 1KBLA
chains in the Genus database with same CATH topology
2EZBA 2HI6A 3EZBA 1VBHA 1GGOA 1KBLA 2OLSA 1JDEA 2MP0A 3T07A 1ZYMA 2HWGA 2E28A 2FM4A 1KC7A 1DIKA 1EZBA 2EZCA 2X0SA 2HROA 3T0TA 3T05A 2R82A 1VBGA 3EZEA 2DIKA 3EZAA 2EZAA 1EZAA 5JVLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EZB A;  2HI6 A;  3EZB A;  1VBH A;  1GGO A;  1KBL A;  2OLS A;  1JDE A;  2MP0 A;  3T07 A;  1ZYM A;  2HWG A;  2E28 A;  2FM4 A;  1KC7 A;  1DIK A;  1EZB A;  2EZC A;  2X0S A;  2HRO A;  3T0T A;  3T05 A;  2R82 A;  1VBG A;  3EZE A;  2DIK A;  3EZA A;  2EZA A;  1EZA A;  5JVL A; 
#chains in the Genus database with same CATH topology
 3H0G A;  3EZB A;  1VBH A;  5F1Y A;  1JDE A;  3TLA A;  2A68 D;  1ZRS A;  3VTA A;  5IZ2 A;  4P4B A;  1TWF A;  3GTL A;  2LYI A;  1VBG A;  2XEJ A;  4NGN A;  3EZA A;  1W27 A;  2JA5 A;  1CE8 B;  4C86 A;  3SJX A;  2N3E A;  3BHX A;  2YJT A;  3T5M A;  3TLG B;  2EZC A;  4C8A A;  4MCS A;  2EZA A;  1TWH A;  1XF1 A;  4C8F A;  3C8O A;  2AUM A;  2EK8 A;  4CEH A;  1ZYR D;  4BAB A;  4C9R A;  4C2M A;  2E2H A;  4C9A A;  2R93 A;  4TJX A;  4C9V A;  1KEE B;  2C6P A;  2JBK A;  4OC0 A;  2YJV A;  2OLS A;  1BXR B;  3BI1 A;  2VUM A;  2E2I A;  1YNN D;  1C30 B;  4OC2 A;  4CZ1 A;  4E94 A;  1I50 A;  3U1B A;  4V2R A;  4JYW A;  2CIJ A;  4C9E A;  2NVX A;  2PCN A;  4CEI A;  3TLY A;  2MP0 A;  4P45 A;  3K4I A;  1KC7 A;  2YII A;  1CX8 A;  4NGR A;  3KRV A;  3T05 A;  3D7H A;  4CDJ A;  2A6H D;  2XEG A;  1I6V D;  4C8U A;  3GTQ A;  2D0P A;  1T6P A;  2X0Q A;  1CS0 B;  1JDB C;  3GTM A;  4IIX A;  4C5R A;  1M6V B;  3S9M A;  2B0A A;  2XEF A;  1TWG A;  1Y9Z A;  4P4E A;  3NZ4 A;  4NGQ A;  3T0T A;  3EZE A;  3S9N A;  4LQG A;  1HQM D;  4C85 A;  2LKM B;  2CW0 D;  2LPJ A;  4TWE A;  4MI1 A;  4NGM A;  3LR2 A;  4C8T A;  1R9T A;  3BXM A;  2X0O A;  2X0P A;  1Z8L A;  2C6C A;  3D7G A;  2HRO A;  4M8D A;  4NGT A;  2F5J A;  2VK9 A;  2LTH A;  2N1D B;  5JVL A;  1WCM A;  5FD8 A;  1Y1V A;  3TLC A;  4C5U A;  1TWC A;  1A9X B;  3BI0 A;  3T07 A;  3GTK A;  4MCP A;  4OC5 A;  4C9U A;  4C99 A;  2EK9 A;  5K99 A;  1K83 A;  3NOJ A;  3TLE A;  2FIO A;  2PVW A;  1I3Q A;  3D7F A;  4MCQ A;  3SJF A;  4C5S A;  5F9M A;  1IW7 D;  3FEC A;  2R92 A;  4P4F A;  4E5S A;  2FM4 A;  4C8C A;  1TWA A;  2OOT A;  2X0S A;  1Y2M A;  3TLG A;  3G23 A;  3FEE A;  4QIW A;  1WVM A;  5F09 A;  3KAS A;  2FIP A;  1GGO A;  3EIF A;  1C3O B;  3TYX A;  2DIK A;  1SFO A;  4OC3 A;  4CDK A;  3SJG A;  2B63 A;  2EZB A;  3TLB A;  1Q5X A;  2C6G A;  3GTP A;  2C5Q A;  3LRD A;  4V2Q A;  2MX8 A;  3SJE A;  2HWG A;  2E28 A;  1NXJ A;  2JBJ A;  1DIK A;  3FF3 A;  3IIB A;  5IR2 A;  1R61 A;  2JA6 A;  2XEI A;  3U4Q A;  4EYS A;  2R82 A;  4YN3 A;  2K3Q A;  4KNG E;  4OC4 A;  2PVV A;  2D0O A;  4JZ0 A;  1Y1W A;  3GTO A;  4P4J A;  4TJV A;  4W9Y A;  2GP4 A;  4C8P A;  4NGS A;  4NGP A;  3D7D A;  4JVO A;  2A69 D;  1EZA A;  4CQ5 A;  4C6G A;  4P4I A;  3S9L A;  3U44 A;  2MX9 A;  4P44 A;  5D29 A;  4COB A;  3FKI A;  2K3N A;  4MCR A;  3GTJ A;  4C84 A;  2Y0N A;  4CEJ A;  3IWW A;  3I6S A;  4INJ A;  1VI4 A;  5F5X A;  5ELY A;  1T36 B;  2HI6 A;  2A6E D;  4OC1 A;  3K9T A;  2YU9 A;  3ICU A;  4OME A;  4CO9 A;  5JYB A;  5IB9 A;  1YNJ D;  3GJZ A;  4J0N A;  1DE4 C;  2MQA A;  1ZYM A;  3LR6 A;  1J3L A;  1EZB A;  3CQZ A;  2LPI A;  4H1H A;  3GTG A;  2K3O A;  1SMY D;  2O5J D;  4FBS A;  2AUN A;  1V6C A;  3LR8 A;  4X3R A;  2BE5 D;  4IIY A;  4COG A;  4BAA A;  3TLZ A;  3I74 A;  1T6J A;  2R7Z A;  4P4D A;  2JA7 A;  3FED A;  2OR4 A;  2AQL A;  1NBW A;  2NVY A;  1ZL0 A;  4MJX A;  3RBU A;  3SR3 A;  1KBL A; 
#chains in the Genus database with same CATH homology
 2EZB A;  2HI6 A;  3EZB A;  1VBH A;  1GGO A;  1KBL A;  2OLS A;  1JDE A;  2MP0 A;  3T07 A;  1ZYM A;  2HWG A;  2E28 A;  2FM4 A;  1KC7 A;  1DIK A;  1EZB A;  2EZC A;  2X0S A;  2HRO A;  3T0T A;  3T05 A;  2R82 A;  1VBG A;  3EZE A;  2DIK A;  3EZA A;  2EZA A;  1EZA A;  5JVL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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