1ZZ3A

Crystal structure of a hdac-like protein with cypx bound
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
367
structure length
367
Chain Sequence
AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Histone deacetylase-like amidohydrolase
publication title Crystal structure of a bacterial class 2 histone deacetylase homologue
pubmed doi rcsb
source organism Alcaligenaceae bacterium
total genus 139
structure length 367
sequence length 367
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2005-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1zz3A00
5EFKB 5G0HA 1T67A 4CBYA 4ZUQA 3C0YA 5LI3A 5G1AA 5DC6A 3Q9BA 3MZ7A 4QA4A 4ZUOA 4QA5A 5G0JA 4QA0A 2VQJA 3MZ6A 4A69A 2VQVA 5D1BA 5THVA 1ZZ1A 3MENA 3ZNRA 5G1BA 5ICNB 5DC5A 5IWGA 3Q9CA 5EENA 2GH6A 5EEMA 5THTA 1VKGA 3C0ZA 4ZUPA 4RN2A 5EFJD 5G0GA 4RN0A 5EFNA 4BZ9A 4QA6A 5BWZA 3F07A 5EEKA 2VQQA 5G0IA 4BZ5A 4QA2A 1W22A 5THUA 3SFFA 3MZ3A 5DC7A 2VQWG 5G11A 4BKXB 1ZZ0A 2VQOA 5EEFA 4RN1A 5EFHA 3F06A 1T69A 1C3RA 5G17A 3Q9EA 5THSA 5G1CA 4LY1A 5A2SA 5G3WA 5EF7A 4CQFA 5D1CA 4CBTA 1ZZ3A 5G13A 5EFGA 4LXZA 4BZ8A 5FCWA 3MZ4A 4ZUMA 3EZPA 4BZ6A 4QA1A 5G10A 5G12A 1C3SA 4ZUNA 5EEIA 1C3PA 5JI5A 3ZNSA 3EWFA 2VCGA 1T64A 2V5WA 4ZURA 5IX0A 4QA7A 3C10A 3Q9FA 3F0RA 3SFHA 2V5XA 3MAXA 5FUEA 5G0XA 5G0YA 3EZTA 2VQMA 4QA3A 3RQDA 5EFBD 5DC8A 4BZ7A 5EF8A 5D1DA 3EW8A
chains in the Genus database with same CATH superfamily
5HJ9A 1RLAA 4RHLA 4ITYA 4Q3UA 4Q40A 5EFKB 5G0HA 4Q3VA 1T67A 4GSMA 4CBYA 4ZUQA 3C0YA 5LI3A 1T5FA 3LP7A 5G1AA 5DC6A 2CEVA 3Q9BA 1HQGA 1XFKA 3MZ7A 4HWWA 4QA4A 4ZUOA 4QA5A 3E8ZA 5G0JA 3TH7A 1R1OA 4QA0A 2VQJA 3MZ6A 3RLAA 3SL0A 4A69A 2VQVA 4MXRA 4DZ4A 3E8QA 2A0MA 2PLLA 5D1BA 3NIQA 5THVA 3THHA 1ZZ1A 3MENA 4IU0A 3ZNRA 4IE3A 2EIVA 5G1BA 1WVAA 1T4RA 4IU1A 5ICNB 5DC5A 5IWGA 3Q9CA 1ZPGA 4HXQA 3NIPA 3PZLA 5EENA 2GH6A 5EEMA 1TBJA 5THTA 4RHKA 3GMZA 3SL1A 4GWCA 4GWDA 1VKGA 3C0ZA 4Q3RA 4ZUPA 4I06A 3E9BA 4RN2A 5EFJD 5G0GA 3TF3A 1PQ3A 4RN0A 5EFNA 4BZ9A 1P8QA 1T4PA 2EF5A 1TA1A 4Q41A 4RHJA 2PHAA 4QA6A 4HZEA 5BWZA 3F07A 4Q3SA 5CEVA 1HQXA 1P8OA 5EEKA 2VQQA 3M1RA 3MFWA 3MJLA 5G0IA 1CEVA 4BZ5A 4QA2A 3MMRA 1W22A 5THUA 3SFFA 3MZ3A 1TBHA 4GSZA 2RLAA 3LP4A 3THJA 5DC7A 3CEVA 2VQWG 4GSVA 4IXUA 4RHMA 5G11A 1WOGA 4BKXB 1ZZ0A 2VQOA 4IU5A 2ZAVA 5EEFA 4MYFA 4RN1A 3E6VA 5EFHA 3F06A 3DJ8A 1T69A 1C3RA 5G17A 3Q9EA 4IE1A 5G1CA 3MFVA 4LY1A 5THSA 3SJTA 5A2SA 3LHLA 5G3WA 5EF7A 4CQFA 3SKKA 1P8PA 5D1CA 4CBTA 1ZZ3A 5G13A 1ZPEA 5EFGA 4LXZA 5RLAA 2AEBA 4BZ8A 1GQ6A 1HQFA 5FCWA 1HQHA 3F80A 3MZ4A 2PHOA 4Q3QA 1HQ5A 4ZUMA 1P8NA 1WOHA 1T4TA 3EZPA 4BZ6A 4G3HA 1T5GA 1P8MA 3GN0A 3NIOA 1C3SA 4Q3TA 4QA1A 5G10A 4ZUNA 5G12A 5EEIA 1C3PA 5JI5A 4FCIA 4RHIA 3ZNSA 3EWFA 2VCGA 1T64A 1D3VA 1P8RA 4Q42A 4MYKA 4MYNA 2V5WA 3THEA 4ZURA 5IX0A 4RLAA 2EF4A 1GQ7A 4QA7A 1TBLA 3C10A 4FCKA 3Q9FA 4Q3RC 3F0RA 3SFHA 1WOIA 2V5XA 1T4SA 3MAXA 5FUEA 5G0XA 4RHQA 5G0YA 4Q3PA 4IU4A 3EZTA 3KV2A 1WVBA 2VQMA 4IXVA 4QA3A 3E6KA 5HJAA 1P8SA 4IE2A 3RQDA 4CEVA 5EFBD 5DC8A 4BZ7A 5EF8A 5D1DA 4MYLA 3EW8A
chains in the Genus database with same CATH topology
5EFKB 5G0HA 1T67A 4CBYA 4ZUQA 3C0YA 5LI3A 5G1AA 5DC6A 3Q9BA 3MZ7A 4QA4A 4ZUOA 4QA5A 5G0JA 4QA0A 2VQJA 3MZ6A 4A69A 2VQVA 5D1BA 5THVA 1ZZ1A 3MENA 3ZNRA 5G1BA 5ICNB 5DC5A 5IWGA 3Q9CA 5EENA 2GH6A 5EEMA 5THTA 1VKGA 3C0ZA 4ZUPA 4RN2A 5EFJD 5G0GA 4RN0A 5EFNA 4BZ9A 4QA6A 5BWZA 3F07A 5EEKA 2VQQA 5G0IA 4BZ5A 4QA2A 1W22A 5THUA 3SFFA 3MZ3A 5DC7A 2VQWG 5G11A 4BKXB 1ZZ0A 2VQOA 5EEFA 4RN1A 5EFHA 3F06A 1T69A 1C3RA 5G17A 3Q9EA 5THSA 5G1CA 4LY1A 5A2SA 5G3WA 5EF7A 4CQFA 5D1CA 4CBTA 1ZZ3A 5G13A 5EFGA 4LXZA 4BZ8A 5FCWA 3MZ4A 4ZUMA 3EZPA 4BZ6A 4QA1A 5G10A 5G12A 1C3SA 4ZUNA 5EEIA 1C3PA 5JI5A 3ZNSA 3EWFA 2VCGA 1T64A 2V5WA 4ZURA 5IX0A 4QA7A 3C10A 3Q9FA 3F0RA 3SFHA 2V5XA 3MAXA 5FUEA 5G0XA 5G0YA 3EZTA 2VQMA 4QA3A 3RQDA 5EFBD 5DC8A 4BZ7A 5EF8A 5D1DA 3EW8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EFK B;  5G0H A;  1T67 A;  4CBY A;  4ZUQ A;  3C0Y A;  5LI3 A;  5G1A A;  5DC6 A;  3Q9B A;  3MZ7 A;  4QA4 A;  4ZUO A;  4QA5 A;  5G0J A;  4QA0 A;  2VQJ A;  3MZ6 A;  4A69 A;  2VQV A;  5D1B A;  5THV A;  1ZZ1 A;  3MEN A;  3ZNR A;  5G1B A;  5ICN B;  5DC5 A;  5IWG A;  3Q9C A;  5EEN A;  2GH6 A;  5EEM A;  5THT A;  1VKG A;  3C0Z A;  4ZUP A;  4RN2 A;  5EFJ D;  5G0G A;  4RN0 A;  5EFN A;  4BZ9 A;  4QA6 A;  5BWZ A;  3F07 A;  5EEK A;  2VQQ A;  5G0I A;  4BZ5 A;  4QA2 A;  1W22 A;  5THU A;  3SFF A;  3MZ3 A;  5DC7 A;  2VQW G;  5G11 A;  4BKX B;  1ZZ0 A;  2VQO A;  5EEF A;  4RN1 A;  5EFH A;  3F06 A;  1T69 A;  1C3R A;  5G17 A;  3Q9E A;  5THS A;  5G1C A;  4LY1 A;  5A2S A;  5G3W A;  5EF7 A;  4CQF A;  5D1C A;  4CBT A;  1ZZ3 A;  5G13 A;  5EFG A;  4LXZ A;  4BZ8 A;  5FCW A;  3MZ4 A;  4ZUM A;  3EZP A;  4BZ6 A;  4QA1 A;  5G10 A;  5G12 A;  1C3S A;  4ZUN A;  5EEI A;  1C3P A;  5JI5 A;  3ZNS A;  3EWF A;  2VCG A;  1T64 A;  2V5W A;  4ZUR A;  5IX0 A;  4QA7 A;  3C10 A;  3Q9F A;  3F0R A;  3SFH A;  2V5X A;  3MAX A;  5FUE A;  5G0X A;  5G0Y A;  3EZT A;  2VQM A;  4QA3 A;  3RQD A;  5EFB D;  5DC8 A;  4BZ7 A;  5EF8 A;  5D1D A;  3EW8 A; 
#chains in the Genus database with same CATH topology
 5HJ9 A;  1RLA A;  4RHL A;  4ITY A;  4Q3U A;  4Q40 A;  5EFK B;  5G0H A;  4Q3V A;  1T67 A;  4GSM A;  4CBY A;  4ZUQ A;  3C0Y A;  5LI3 A;  1T5F A;  3LP7 A;  5G1A A;  5DC6 A;  2CEV A;  3Q9B A;  1HQG A;  1XFK A;  3MZ7 A;  4HWW A;  4QA4 A;  4ZUO A;  4QA5 A;  3E8Z A;  5G0J A;  3TH7 A;  1R1O A;  4QA0 A;  2VQJ A;  3MZ6 A;  3RLA A;  3SL0 A;  4A69 A;  2VQV A;  4MXR A;  4DZ4 A;  3E8Q A;  2A0M A;  2PLL A;  5D1B A;  3NIQ A;  5THV A;  3THH A;  1ZZ1 A;  3MEN A;  4IU0 A;  3ZNR A;  4IE3 A;  2EIV A;  5G1B A;  1WVA A;  1T4R A;  4IU1 A;  5ICN B;  5DC5 A;  5IWG A;  3Q9C A;  1ZPG A;  4HXQ A;  3NIP A;  3PZL A;  5EEN A;  2GH6 A;  5EEM A;  1TBJ A;  5THT A;  4RHK A;  3GMZ A;  3SL1 A;  4GWC A;  4GWD A;  1VKG A;  3C0Z A;  4Q3R A;  4ZUP A;  4I06 A;  3E9B A;  4RN2 A;  5EFJ D;  5G0G A;  3TF3 A;  1PQ3 A;  4RN0 A;  5EFN A;  4BZ9 A;  1P8Q A;  1T4P A;  2EF5 A;  1TA1 A;  4Q41 A;  4RHJ A;  2PHA A;  4QA6 A;  4HZE A;  5BWZ A;  3F07 A;  4Q3S A;  5CEV A;  1HQX A;  1P8O A;  5EEK A;  2VQQ A;  3M1R A;  3MFW A;  3MJL A;  5G0I A;  1CEV A;  4BZ5 A;  4QA2 A;  3MMR A;  1W22 A;  5THU A;  3SFF A;  3MZ3 A;  1TBH A;  4GSZ A;  2RLA A;  3LP4 A;  3THJ A;  5DC7 A;  3CEV A;  2VQW G;  4GSV A;  4IXU A;  4RHM A;  5G11 A;  1WOG A;  4BKX B;  1ZZ0 A;  2VQO A;  4IU5 A;  2ZAV A;  5EEF A;  4MYF A;  4RN1 A;  3E6V A;  5EFH A;  3F06 A;  3DJ8 A;  1T69 A;  1C3R A;  5G17 A;  3Q9E A;  4IE1 A;  5G1C A;  3MFV A;  4LY1 A;  5THS A;  3SJT A;  5A2S A;  3LHL A;  5G3W A;  5EF7 A;  4CQF A;  3SKK A;  1P8P A;  5D1C A;  4CBT A;  1ZZ3 A;  5G13 A;  1ZPE A;  5EFG A;  4LXZ A;  5RLA A;  2AEB A;  4BZ8 A;  1GQ6 A;  1HQF A;  5FCW A;  1HQH A;  3F80 A;  3MZ4 A;  2PHO A;  4Q3Q A;  1HQ5 A;  4ZUM A;  1P8N A;  1WOH A;  1T4T A;  3EZP A;  4BZ6 A;  4G3H A;  1T5G A;  1P8M A;  3GN0 A;  3NIO A;  1C3S A;  4Q3T A;  4QA1 A;  5G10 A;  4ZUN A;  5G12 A;  5EEI A;  1C3P A;  5JI5 A;  4FCI A;  4RHI A;  3ZNS A;  3EWF A;  2VCG A;  1T64 A;  1D3V A;  1P8R A;  4Q42 A;  4MYK A;  4MYN A;  2V5W A;  3THE A;  4ZUR A;  5IX0 A;  4RLA A;  2EF4 A;  1GQ7 A;  4QA7 A;  1TBL A;  3C10 A;  4FCK A;  3Q9F A;  4Q3R C;  3F0R A;  3SFH A;  1WOI A;  2V5X A;  1T4S A;  3MAX A;  5FUE A;  5G0X A;  4RHQ A;  5G0Y A;  4Q3P A;  4IU4 A;  3EZT A;  3KV2 A;  1WVB A;  2VQM A;  4IXV A;  4QA3 A;  3E6K A;  5HJA A;  1P8S A;  4IE2 A;  3RQD A;  4CEV A;  5EFB D;  5DC8 A;  4BZ7 A;  5EF8 A;  5D1D A;  4MYL A;  3EW8 A; 
#chains in the Genus database with same CATH homology
 5EFK B;  5G0H A;  1T67 A;  4CBY A;  4ZUQ A;  3C0Y A;  5LI3 A;  5G1A A;  5DC6 A;  3Q9B A;  3MZ7 A;  4QA4 A;  4ZUO A;  4QA5 A;  5G0J A;  4QA0 A;  2VQJ A;  3MZ6 A;  4A69 A;  2VQV A;  5D1B A;  5THV A;  1ZZ1 A;  3MEN A;  3ZNR A;  5G1B A;  5ICN B;  5DC5 A;  5IWG A;  3Q9C A;  5EEN A;  2GH6 A;  5EEM A;  5THT A;  1VKG A;  3C0Z A;  4ZUP A;  4RN2 A;  5EFJ D;  5G0G A;  4RN0 A;  5EFN A;  4BZ9 A;  4QA6 A;  5BWZ A;  3F07 A;  5EEK A;  2VQQ A;  5G0I A;  4BZ5 A;  4QA2 A;  1W22 A;  5THU A;  3SFF A;  3MZ3 A;  5DC7 A;  2VQW G;  5G11 A;  4BKX B;  1ZZ0 A;  2VQO A;  5EEF A;  4RN1 A;  5EFH A;  3F06 A;  1T69 A;  1C3R A;  5G17 A;  3Q9E A;  5THS A;  5G1C A;  4LY1 A;  5A2S A;  5G3W A;  5EF7 A;  4CQF A;  5D1C A;  4CBT A;  1ZZ3 A;  5G13 A;  5EFG A;  4LXZ A;  4BZ8 A;  5FCW A;  3MZ4 A;  4ZUM A;  3EZP A;  4BZ6 A;  4QA1 A;  5G10 A;  5G12 A;  1C3S A;  4ZUN A;  5EEI A;  1C3P A;  5JI5 A;  3ZNS A;  3EWF A;  2VCG A;  1T64 A;  2V5W A;  4ZUR A;  5IX0 A;  4QA7 A;  3C10 A;  3Q9F A;  3F0R A;  3SFH A;  2V5X A;  3MAX A;  5FUE A;  5G0X A;  5G0Y A;  3EZT A;  2VQM A;  4QA3 A;  3RQD A;  5EFB D;  5DC8 A;  4BZ7 A;  5EF8 A;  5D1D A;  3EW8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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