1AJWA

Structure of rhogdi: a c-terminal binding domain targets an n-terminal inhibitory peptide to gtpases, nmr, 20 structures
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
145
structure length
145
Chain Sequence
AVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rho-gtpase inhibitor
molecule keywords RHOGDI
publication title C-terminal binding domain of Rho GDP-dissociation inhibitor directs N-terminal inhibitory peptide to GTPases.
pubmed doi rcsb
source organism Bos taurus
total genus 12
structure length 145
sequence length 145
ec nomenclature
pdb deposition date 1997-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 1ajwA00
1FSOA 1FT0A 1HH4D 2JHZA 2JHUA 2JHTA 1AJWA 4F38B 1GDFA 2JHWA 1FSTA 2JHYA 2BXWA 1DS6B 2JHXA 2JHVA 1FT3A 1KMTA 2JHSA 2JI0A 1RHOA 1QVYA 1DOAB
chains in the Genus database with same CATH superfamily
3JUAA 2JHZA 5ACFA 5HNOA 4FMRA 4OY8A 4F38B 4ALTA 4JHPB 2JHYA 4OY6A 5ACHA 2JI0A 2JHSA 5DQ8A 4B5QA 4LN0A 4GOJC 2BENA 4RE1A 5IJUA 4ALQA 4EISA 2JHUA 2JHTA 2VTCA 4QI8A 5HNPA 5FJQA 2R5OA 2JHWA 5DQEA 5ACGA 1FSTA 3KYSA 2YETA 3ZUDA 4EISB 2JHVA 1FT3A 2YOYA 4OY7A 5ACJA 5TARB 4MAIA 3EJAA 4GBOA 4D7UA 5E8FA 1KSJB 2YOWA 4ALCA 1FSOA 5EMWA 3T5IA 1AJWA 1GDFA 3RBQA 3L15A 2XWXA 4EIRA 1DS6B 5F2UA 3T5GB 4ALSA 4ALRA 2LHSA 1RHOA 4JV8B 4MAHA 3EIIA 4GOKC 4A02A 1DOAB 1FT0A 1HH4D 5TB5B 5ACIA 5HGUA 1KSGB 4D7VA 5L7KA 4JVBB 3UAMA 5FTZA 2BXWA 4ALEA 2JHXA 2YOXA 5FOHA 4JV6B 5AA7A 4JVFB 1KMTA 5EMVA 5E80A 1KSHB 3GQQA 2BEMA 1QVYA
chains in the Genus database with same CATH topology
1FSOA 1FT0A 1HH4D 2JHZA 2JHUA 2JHTA 1AJWA 4F38B 1GDFA 2JHWA 1FSTA 2JHYA 2BXWA 1DS6B 2JHXA 2JHVA 1FT3A 1KMTA 2JHSA 2JI0A 1RHOA 1QVYA 1DOAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FSO A;  1FT0 A;  1HH4 D;  2JHZ A;  2JHU A;  2JHT A;  1AJW A;  4F38 B;  1GDF A;  2JHW A;  1FST A;  2JHY A;  2BXW A;  1DS6 B;  2JHX A;  2JHV A;  1FT3 A;  1KMT A;  2JHS A;  2JI0 A;  1RHO A;  1QVY A;  1DOA B; 
#chains in the Genus database with same CATH topology
 3JUA A;  2JHZ A;  5ACF A;  5HNO A;  4FMR A;  4OY8 A;  4F38 B;  4ALT A;  4JHP B;  2JHY A;  4OY6 A;  5ACH A;  2JI0 A;  2JHS A;  5DQ8 A;  4B5Q A;  4LN0 A;  4GOJ C;  2BEN A;  4RE1 A;  5IJU A;  4ALQ A;  4EIS A;  2JHU A;  2JHT A;  2VTC A;  4QI8 A;  5HNP A;  5FJQ A;  2R5O A;  2JHW A;  5DQE A;  5ACG A;  1FST A;  3KYS A;  2YET A;  3ZUD A;  4EIS B;  2JHV A;  1FT3 A;  2YOY A;  4OY7 A;  5ACJ A;  5TAR B;  4MAI A;  3EJA A;  4GBO A;  4D7U A;  5E8F A;  1KSJ B;  2YOW A;  4ALC A;  1FSO A;  5EMW A;  3T5I A;  1AJW A;  1GDF A;  3RBQ A;  3L15 A;  2XWX A;  4EIR A;  1DS6 B;  5F2U A;  3T5G B;  4ALS A;  4ALR A;  2LHS A;  1RHO A;  4JV8 B;  4MAH A;  3EII A;  4GOK C;  4A02 A;  1DOA B;  1FT0 A;  1HH4 D;  5TB5 B;  5ACI A;  5HGU A;  1KSG B;  4D7V A;  5L7K A;  4JVB B;  3UAM A;  5FTZ A;  2BXW A;  4ALE A;  2JHX A;  2YOX A;  5FOH A;  4JV6 B;  5AA7 A;  4JVF B;  1KMT A;  5EMV A;  5E80 A;  1KSH B;  3GQQ A;  2BEM A;  1QVY A; 
#chains in the Genus database with same CATH homology
 1FSO A;  1FT0 A;  1HH4 D;  2JHZ A;  2JHU A;  2JHT A;  1AJW A;  4F38 B;  1GDF A;  2JHW A;  1FST A;  2JHY A;  2BXW A;  1DS6 B;  2JHX A;  2JHV A;  1FT3 A;  1KMT A;  2JHS A;  2JI0 A;  1RHO A;  1QVY A;  1DOA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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