1ALIA

Alkaline phosphatase mutant (h412n)
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQENTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (phosphoric monoester)
molecule keywords ALKALINE PHOSPHATASE
publication title Escherichia coli alkaline phosphatase: X-ray structural studies of a mutant enzyme (His-412-->Asn) at one of the catalytically important zinc binding sites.
pubmed rcsb
source organism Escherichia coli
total genus 162
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1aliA00
1N2LA 3Q3QA 1EW2A 3KD8A 1HJKA 3M8YA 3NKMA 5LIAA 1SHNA 5KXAA 3NKOA 4LQYA 4UOPA 5L0BA 3WAVA 1KHJA 3SZYA 4KAYA 3IGZB 1ALIA 4KJDA 4GTWA 1ZEBA 4CXKA 5DLWA 4FDIA 3BDFA 2GSNA 4CXUA 1SHQA 4UOOA 1O98A 2W5WA 4KM4A 5AJ9A 1KH4A 3A52A 1AJAA 4UPIA 3UN3A 5K4PA 4UPLA 1E2SP 1ELXA 2VQRA 3UN5A 3WAXA 2W5VA 2XRGA 5GOVA 3M8ZA 2GSUA 1EW9A 2W5XA 3CMRA 1ANJA 3NKRA 3TG0A 4LRFA 3DPCA 2W5TA 2X98A 1ALHA 3IGYB 3WAWA 4KJGA 4GTZA 4UORA 1ELZA 4UPHA 2XR9A 2IFYA 2GA3A 2GSOA 4GTXA 4LRAA 4ZG7A 1KHKA 4LRBA 5LQQA 1ANIA 1KH5A 5C66A 1O99A 3T00A 3NVLA 3TX0A 4LRCA 4MY4A 5GRRA 3E2DA 4QAXA 1ALJA 1Y7AA 4ZG9A 3NKNA 4LRDA 5IJQA 4MIVA 3DYCA 1K7HA 4GTYA 1HQAA 1EW8A 4KAVA 1AJDA 1EJJA 1N2KA 1ED9A 5DLVA 4LREA 3TWZA 4NWXA 3OT9A 3T02A 2W8SA 3NKPA 1FSUA 1ALKA 1KHLA 1ELYA 4CXSA 3NKQA 2ZKTA 1B8JA 3M8WA 4UPKA 2W5QA 4CYRA 3ED4A 1ZEFA 2QZUA 2W8DA 5IJSA 1AJCA 3WAYA 4ZGAA 4LR2A 3UO0A 5LRNA 4FDJA 5L0EA 3LXQA 3BDGB 3WBHA 4CYSA 1KH7A 1EI6A 4LR8A 1EQJA 1AJBA 2IUCB 5EGHA 4YR1A 2GLQA 1Y6VA 3MK1A 1ZEDA 1HDHA 5EGEA 2D1GA 2W5RA 3BDGA 4MHXA 5TJ3A 4LR9A 3T01A 1KHNA 2IUCA 3BDHA 3B5QA 3MK2A 5LRMA 3UNYA 3SZZA 1ED8A 4N7TA 3UN2A 4LR7A 2RH6A 3M7VA 3IDDA 1AUKA 1URBA 1E1ZP 3MK0A 4NWJA 1URAA 2W5SA 5INHA 5HRTA 2ANHA 1E3CP 1P49A 5DLTA 4B56A 4ZG6A 2G9YA 4TN0A 1E33P 5L0KA 1KH9A
chains in the Genus database with same CATH superfamily
1N2LA 3Q3QA 1EW2A 3KD8A 1HJKA 3M8YA 3NKMA 5LIAA 1SHNA 5KXAA 3NKOA 4LQYA 4UOPA 5L0BA 3WAVA 1KHJA 3SZYA 4KAYA 3IGZB 1ALIA 4KJDA 4GTWA 1ZEBA 4CXKA 5DLWA 4FDIA 3BDFA 2GSNA 4CXUA 1SHQA 4UOOA 1O98A 2W5WA 4KM4A 5AJ9A 1KH4A 3A52A 1AJAA 4UPIA 3UN3A 5K4PA 4UPLA 1E2SP 1ELXA 2VQRA 3UN5A 3WAXA 2W5VA 2XRGA 5GOVA 3M8ZA 2GSUA 1EW9A 2W5XA 3CMRA 1ANJA 3NKRA 3TG0A 4LRFA 3DPCA 2W5TA 2X98A 1ALHA 3IGYB 3WAWA 4KJGA 4GTZA 4UORA 1ELZA 4UPHA 2XR9A 2IFYA 2GA3A 2GSOA 4GTXA 4LRAA 4ZG7A 1KHKA 4LRBA 5LQQA 1ANIA 1KH5A 5C66A 1O99A 3T00A 3NVLA 3TX0A 4LRCA 4MY4A 5GRRA 3E2DA 4QAXA 1ALJA 1Y7AA 4ZG9A 3NKNA 4LRDA 5IJQA 4MIVA 3DYCA 1K7HA 4GTYA 1HQAA 1EW8A 4KAVA 1AJDA 1EJJA 1N2KA 1ED9A 5DLVA 4LREA 3TWZA 4NWXA 3OT9A 3T02A 2W8SA 3NKPA 1FSUA 1ALKA 1KHLA 1ELYA 4CXSA 3NKQA 2ZKTA 1B8JA 3M8WA 4UPKA 2W5QA 4CYRA 3ED4A 1ZEFA 2QZUA 2W8DA 5IJSA 1AJCA 3WAYA 4ZGAA 4LR2A 3UO0A 5LRNA 4FDJA 5L0EA 3LXQA 3BDGB 3WBHA 4CYSA 1KH7A 1EI6A 4LR8A 1EQJA 1AJBA 2IUCB 5EGHA 4YR1A 2GLQA 1Y6VA 3MK1A 1ZEDA 1HDHA 5EGEA 2D1GA 2W5RA 3BDGA 4MHXA 5TJ3A 4LR9A 3T01A 1KHNA 2IUCA 3BDHA 3B5QA 3MK2A 5LRMA 3UNYA 3SZZA 1ED8A 4N7TA 3UN2A 4LR7A 2RH6A 3M7VA 3IDDA 1AUKA 1URBA 1E1ZP 3MK0A 4NWJA 1URAA 2W5SA 5INHA 5HRTA 2ANHA 1E3CP 1P49A 5DLTA 4B56A 4ZG6A 2G9YA 4TN0A 1E33P 5L0KA 1KH9A
chains in the Genus database with same CATH topology
1N2LA 3Q3QA 1EW2A 3KD8A 1HJKA 3M8YA 3NKMA 5LIAA 1SHNA 5KXAA 3NKOA 4LQYA 4UOPA 5L0BA 3WAVA 1KHJA 3SZYA 4KAYA 3IGZB 1ALIA 4KJDA 4GTWA 1ZEBA 4CXKA 5DLWA 4FDIA 3BDFA 2GSNA 4CXUA 1SHQA 4UOOA 1O98A 2W5WA 4KM4A 5AJ9A 1KH4A 3A52A 1AJAA 4UPIA 3UN3A 5K4PA 4UPLA 1E2SP 1ELXA 2VQRA 3UN5A 3WAXA 2W5VA 2XRGA 5GOVA 3M8ZA 2GSUA 1EW9A 2W5XA 3CMRA 1ANJA 3NKRA 3TG0A 4LRFA 3DPCA 2W5TA 2X98A 1ALHA 3IGYB 3WAWA 4KJGA 4GTZA 4UORA 1ELZA 4UPHA 2XR9A 2IFYA 2GA3A 2GSOA 4GTXA 4LRAA 4ZG7A 1KHKA 4LRBA 5LQQA 1ANIA 1KH5A 5C66A 1O99A 3T00A 3NVLA 3TX0A 4LRCA 4MY4A 5GRRA 3E2DA 4QAXA 1ALJA 1Y7AA 4ZG9A 3NKNA 4LRDA 5IJQA 4MIVA 3DYCA 1K7HA 4GTYA 1HQAA 1EW8A 4KAVA 1AJDA 1EJJA 1N2KA 1ED9A 5DLVA 4LREA 3TWZA 4NWXA 3OT9A 3T02A 2W8SA 3NKPA 1FSUA 1ALKA 1KHLA 1ELYA 4CXSA 3NKQA 2ZKTA 1B8JA 3M8WA 4UPKA 2W5QA 4CYRA 3ED4A 1ZEFA 2QZUA 2W8DA 5IJSA 1AJCA 3WAYA 4ZGAA 4LR2A 3UO0A 5LRNA 4FDJA 5L0EA 3LXQA 3BDGB 3WBHA 4CYSA 1KH7A 1EI6A 4LR8A 1EQJA 1AJBA 2IUCB 5EGHA 4YR1A 2GLQA 1Y6VA 3MK1A 1ZEDA 1HDHA 5EGEA 2D1GA 2W5RA 3BDGA 4MHXA 5TJ3A 4LR9A 3T01A 1KHNA 2IUCA 3BDHA 3B5QA 3MK2A 5LRMA 3UNYA 3SZZA 1ED8A 4N7TA 3UN2A 4LR7A 2RH6A 3M7VA 3IDDA 1AUKA 1URBA 1E1ZP 3MK0A 4NWJA 1URAA 2W5SA 5INHA 5HRTA 2ANHA 1E3CP 1P49A 5DLTA 4B56A 4ZG6A 2G9YA 4TN0A 1E33P 5L0KA 1KH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N2L A;  3Q3Q A;  1EW2 A;  3KD8 A;  1HJK A;  3M8Y A;  3NKM A;  5LIA A;  1SHN A;  5KXA A;  3NKO A;  4LQY A;  4UOP A;  5L0B A;  3WAV A;  1KHJ A;  3SZY A;  4KAY A;  3IGZ B;  1ALI A;  4KJD A;  4GTW A;  1ZEB A;  4CXK A;  5DLW A;  4FDI A;  3BDF A;  2GSN A;  4CXU A;  1SHQ A;  4UOO A;  1O98 A;  2W5W A;  4KM4 A;  5AJ9 A;  1KH4 A;  3A52 A;  1AJA A;  4UPI A;  3UN3 A;  5K4P A;  4UPL A;  1E2S P;  1ELX A;  2VQR A;  3UN5 A;  3WAX A;  2W5V A;  2XRG A;  5GOV A;  3M8Z A;  2GSU A;  1EW9 A;  2W5X A;  3CMR A;  1ANJ A;  3NKR A;  3TG0 A;  4LRF A;  3DPC A;  2W5T A;  2X98 A;  1ALH A;  3IGY B;  3WAW A;  4KJG A;  4GTZ A;  4UOR A;  1ELZ A;  4UPH A;  2XR9 A;  2IFY A;  2GA3 A;  2GSO A;  4GTX A;  4LRA A;  4ZG7 A;  1KHK A;  4LRB A;  5LQQ A;  1ANI A;  1KH5 A;  5C66 A;  1O99 A;  3T00 A;  3NVL A;  3TX0 A;  4LRC A;  4MY4 A;  5GRR A;  3E2D A;  4QAX A;  1ALJ A;  1Y7A A;  4ZG9 A;  3NKN A;  4LRD A;  5IJQ A;  4MIV A;  3DYC A;  1K7H A;  4GTY A;  1HQA A;  1EW8 A;  4KAV A;  1AJD A;  1EJJ A;  1N2K A;  1ED9 A;  5DLV A;  4LRE A;  3TWZ A;  4NWX A;  3OT9 A;  3T02 A;  2W8S A;  3NKP A;  1FSU A;  1ALK A;  1KHL A;  1ELY A;  4CXS A;  3NKQ A;  2ZKT A;  1B8J A;  3M8W A;  4UPK A;  2W5Q A;  4CYR A;  3ED4 A;  1ZEF A;  2QZU A;  2W8D A;  5IJS A;  1AJC A;  3WAY A;  4ZGA A;  4LR2 A;  3UO0 A;  5LRN A;  4FDJ A;  5L0E A;  3LXQ A;  3BDG B;  3WBH A;  4CYS A;  1KH7 A;  1EI6 A;  4LR8 A;  1EQJ A;  1AJB A;  2IUC B;  5EGH A;  4YR1 A;  2GLQ A;  1Y6V A;  3MK1 A;  1ZED A;  1HDH A;  5EGE A;  2D1G A;  2W5R A;  3BDG A;  4MHX A;  5TJ3 A;  4LR9 A;  3T01 A;  1KHN A;  2IUC A;  3BDH A;  3B5Q A;  3MK2 A;  5LRM A;  3UNY A;  3SZZ A;  1ED8 A;  4N7T A;  3UN2 A;  4LR7 A;  2RH6 A;  3M7V A;  3IDD A;  1AUK A;  1URB A;  1E1Z P;  3MK0 A;  4NWJ A;  1URA A;  2W5S A;  5INH A;  5HRT A;  2ANH A;  1E3C P;  1P49 A;  5DLT A;  4B56 A;  4ZG6 A;  2G9Y A;  4TN0 A;  1E33 P;  5L0K A;  1KH9 A; 
#chains in the Genus database with same CATH topology
 1N2L A;  3Q3Q A;  1EW2 A;  3KD8 A;  1HJK A;  3M8Y A;  3NKM A;  5LIA A;  1SHN A;  5KXA A;  3NKO A;  4LQY A;  4UOP A;  5L0B A;  3WAV A;  1KHJ A;  3SZY A;  4KAY A;  3IGZ B;  1ALI A;  4KJD A;  4GTW A;  1ZEB A;  4CXK A;  5DLW A;  4FDI A;  3BDF A;  2GSN A;  4CXU A;  1SHQ A;  4UOO A;  1O98 A;  2W5W A;  4KM4 A;  5AJ9 A;  1KH4 A;  3A52 A;  1AJA A;  4UPI A;  3UN3 A;  5K4P A;  4UPL A;  1E2S P;  1ELX A;  2VQR A;  3UN5 A;  3WAX A;  2W5V A;  2XRG A;  5GOV A;  3M8Z A;  2GSU A;  1EW9 A;  2W5X A;  3CMR A;  1ANJ A;  3NKR A;  3TG0 A;  4LRF A;  3DPC A;  2W5T A;  2X98 A;  1ALH A;  3IGY B;  3WAW A;  4KJG A;  4GTZ A;  4UOR A;  1ELZ A;  4UPH A;  2XR9 A;  2IFY A;  2GA3 A;  2GSO A;  4GTX A;  4LRA A;  4ZG7 A;  1KHK A;  4LRB A;  5LQQ A;  1ANI A;  1KH5 A;  5C66 A;  1O99 A;  3T00 A;  3NVL A;  3TX0 A;  4LRC A;  4MY4 A;  5GRR A;  3E2D A;  4QAX A;  1ALJ A;  1Y7A A;  4ZG9 A;  3NKN A;  4LRD A;  5IJQ A;  4MIV A;  3DYC A;  1K7H A;  4GTY A;  1HQA A;  1EW8 A;  4KAV A;  1AJD A;  1EJJ A;  1N2K A;  1ED9 A;  5DLV A;  4LRE A;  3TWZ A;  4NWX A;  3OT9 A;  3T02 A;  2W8S A;  3NKP A;  1FSU A;  1ALK A;  1KHL A;  1ELY A;  4CXS A;  3NKQ A;  2ZKT A;  1B8J A;  3M8W A;  4UPK A;  2W5Q A;  4CYR A;  3ED4 A;  1ZEF A;  2QZU A;  2W8D A;  5IJS A;  1AJC A;  3WAY A;  4ZGA A;  4LR2 A;  3UO0 A;  5LRN A;  4FDJ A;  5L0E A;  3LXQ A;  3BDG B;  3WBH A;  4CYS A;  1KH7 A;  1EI6 A;  4LR8 A;  1EQJ A;  1AJB A;  2IUC B;  5EGH A;  4YR1 A;  2GLQ A;  1Y6V A;  3MK1 A;  1ZED A;  1HDH A;  5EGE A;  2D1G A;  2W5R A;  3BDG A;  4MHX A;  5TJ3 A;  4LR9 A;  3T01 A;  1KHN A;  2IUC A;  3BDH A;  3B5Q A;  3MK2 A;  5LRM A;  3UNY A;  3SZZ A;  1ED8 A;  4N7T A;  3UN2 A;  4LR7 A;  2RH6 A;  3M7V A;  3IDD A;  1AUK A;  1URB A;  1E1Z P;  3MK0 A;  4NWJ A;  1URA A;  2W5S A;  5INH A;  5HRT A;  2ANH A;  1E3C P;  1P49 A;  5DLT A;  4B56 A;  4ZG6 A;  2G9Y A;  4TN0 A;  1E33 P;  5L0K A;  1KH9 A; 
#chains in the Genus database with same CATH homology
 1N2L A;  3Q3Q A;  1EW2 A;  3KD8 A;  1HJK A;  3M8Y A;  3NKM A;  5LIA A;  1SHN A;  5KXA A;  3NKO A;  4LQY A;  4UOP A;  5L0B A;  3WAV A;  1KHJ A;  3SZY A;  4KAY A;  3IGZ B;  1ALI A;  4KJD A;  4GTW A;  1ZEB A;  4CXK A;  5DLW A;  4FDI A;  3BDF A;  2GSN A;  4CXU A;  1SHQ A;  4UOO A;  1O98 A;  2W5W A;  4KM4 A;  5AJ9 A;  1KH4 A;  3A52 A;  1AJA A;  4UPI A;  3UN3 A;  5K4P A;  4UPL A;  1E2S P;  1ELX A;  2VQR A;  3UN5 A;  3WAX A;  2W5V A;  2XRG A;  5GOV A;  3M8Z A;  2GSU A;  1EW9 A;  2W5X A;  3CMR A;  1ANJ A;  3NKR A;  3TG0 A;  4LRF A;  3DPC A;  2W5T A;  2X98 A;  1ALH A;  3IGY B;  3WAW A;  4KJG A;  4GTZ A;  4UOR A;  1ELZ A;  4UPH A;  2XR9 A;  2IFY A;  2GA3 A;  2GSO A;  4GTX A;  4LRA A;  4ZG7 A;  1KHK A;  4LRB A;  5LQQ A;  1ANI A;  1KH5 A;  5C66 A;  1O99 A;  3T00 A;  3NVL A;  3TX0 A;  4LRC A;  4MY4 A;  5GRR A;  3E2D A;  4QAX A;  1ALJ A;  1Y7A A;  4ZG9 A;  3NKN A;  4LRD A;  5IJQ A;  4MIV A;  3DYC A;  1K7H A;  4GTY A;  1HQA A;  1EW8 A;  4KAV A;  1AJD A;  1EJJ A;  1N2K A;  1ED9 A;  5DLV A;  4LRE A;  3TWZ A;  4NWX A;  3OT9 A;  3T02 A;  2W8S A;  3NKP A;  1FSU A;  1ALK A;  1KHL A;  1ELY A;  4CXS A;  3NKQ A;  2ZKT A;  1B8J A;  3M8W A;  4UPK A;  2W5Q A;  4CYR A;  3ED4 A;  1ZEF A;  2QZU A;  2W8D A;  5IJS A;  1AJC A;  3WAY A;  4ZGA A;  4LR2 A;  3UO0 A;  5LRN A;  4FDJ A;  5L0E A;  3LXQ A;  3BDG B;  3WBH A;  4CYS A;  1KH7 A;  1EI6 A;  4LR8 A;  1EQJ A;  1AJB A;  2IUC B;  5EGH A;  4YR1 A;  2GLQ A;  1Y6V A;  3MK1 A;  1ZED A;  1HDH A;  5EGE A;  2D1G A;  2W5R A;  3BDG A;  4MHX A;  5TJ3 A;  4LR9 A;  3T01 A;  1KHN A;  2IUC A;  3BDH A;  3B5Q A;  3MK2 A;  5LRM A;  3UNY A;  3SZZ A;  1ED8 A;  4N7T A;  3UN2 A;  4LR7 A;  2RH6 A;  3M7V A;  3IDD A;  1AUK A;  1URB A;  1E1Z P;  3MK0 A;  4NWJ A;  1URA A;  2W5S A;  5INH A;  5HRT A;  2ANH A;  1E3C P;  1P49 A;  5DLT A;  4B56 A;  4ZG6 A;  2G9Y A;  4TN0 A;  1E33 P;  5L0K A;  1KH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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