1ALKA

Reaction mechanism of alkaline phosphatase based on crystal structures. two metal ion catalysis
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
molecule keywords ALKALINE PHOSPHATASE
publication title Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.
pubmed doi rcsb
source organism Escherichia coli
total genus 158
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1993-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1alkA00
4UPHA 1KHNA 4LREA 5DLVA 1Y6VA 1EJJA 2VQRA 4NWXA 4QAXA 3UN5A 3SZYA 4LR8A 1KH4A 3DYCA 4UPIA 3T01A 1E2SP 3E2DA 4CXSA 2W5VA 4MIVA 4LRFA 4FDIA 3M8ZA 2W8DA 4UORA 1B8JA 4LR9A 1EW8A 3T00A 1EW9A 2IFYA 3NKMA 5LRMA 2W5RA 3TWZA 1AJCA 3BDHA 2ANHA 2GSOA 1N2KA 3DPCA 3OT9A 4LR2A 3Q3QA 4UOOA 4LRBA 5K4PA 3TX0A 5EGHA 1ALJA 2W8SA 4CYRA 1SHNA 3M7VA 1E1ZP 3UN2A 3UNYA 5IJSA 4MHXA 3NKPA 2GA3A 3NKQA 3BDGA 4ZG6A 1HJKA 5DLTA 4B56A 5GOVA 2XRGA 3MK2A 1AJAA 1ZEBA 1ELXA 1EI6A 4KM4A 1AJBA 1ED8A 1ALHA 3CMRA 2RH6A 3UN3A 3TG0A 3LXQA 2IUCB 3BDFA 3WAYA 1HDHA 1KHJA 1ELYA 1ZEDA 3NVLA 3B5QA 5LIAA 4CXUA 2G9YA 1URBA 4GTZA 4TN0A 1ALIA 2D1GA 1KH7A 4UOPA 3M8YA 3IGZB 4CYSA 4ZG9A 3NKOA 3IGYB 5L0KA 2GSNA 4LRAA 5AJ9A 4ZGAA 5L0BA 1ZEFA 4UPLA 1KH5A 3MK0A 4LR7A 4YR1A 3IDDA 5LRNA 4LRDA 5TJ3A 3NKNA 3BDGB 1KHLA 4KAVA 5IJQA 4ZG7A 5C66A 3ED4A 4GTWA 4KAYA 1P49A 2W5TA 4LRCA 2X98A 1AUKA 1EQJA 2GLQA 5HRTA 3KD8A 1HQAA 4UPKA 1EW2A 1AJDA 1ALKA 1E33P 1O99A 1E3CP 3WAXA 3NKRA 4CXKA 4NWJA 1URAA 4FDJA 5DLWA 2ZKTA 1ANJA 1SHQA 1KH9A 3WBHA 2XR9A 1FSUA 1Y7AA 2W5XA 2QZUA 4MY4A 3UO0A 5EGEA 2W5WA 5GRRA 3A52A 3M8WA 3T02A 2IUCA 2W5SA 4GTYA 4KJDA 1ED9A 2W5QA 4KJGA 5INHA 1O98A 4LQYA 1ANIA 3MK1A 4GTXA 3SZZA 4N7TA 1N2LA 5LQQA 3WAWA 1ELZA 1KHKA 2GSUA 1K7HA 3WAVA 5L0EA 5KXAA
chains in the Genus database with same CATH superfamily
4UPHA 1KHNA 4LREA 5DLVA 1Y6VA 1EJJA 2VQRA 4NWXA 4QAXA 3UN5A 3SZYA 4LR8A 1KH4A 3DYCA 4UPIA 3T01A 1E2SP 3E2DA 4CXSA 2W5VA 4MIVA 4LRFA 4FDIA 3M8ZA 2W8DA 4UORA 1B8JA 4LR9A 1EW8A 3T00A 1EW9A 2IFYA 3NKMA 5LRMA 2W5RA 3TWZA 1AJCA 3BDHA 2ANHA 2GSOA 1N2KA 3DPCA 3OT9A 4LR2A 3Q3QA 4UOOA 4LRBA 5K4PA 3TX0A 5EGHA 1ALJA 2W8SA 4CYRA 1SHNA 3M7VA 1E1ZP 3UN2A 3UNYA 5IJSA 4MHXA 3NKPA 2GA3A 3NKQA 3BDGA 4ZG6A 1HJKA 5DLTA 4B56A 5GOVA 2XRGA 3MK2A 1AJAA 1ZEBA 1ELXA 1EI6A 4KM4A 1AJBA 1ED8A 1ALHA 3CMRA 2RH6A 3UN3A 3TG0A 3LXQA 2IUCB 3BDFA 3WAYA 1HDHA 1KHJA 1ELYA 1ZEDA 3NVLA 3B5QA 5LIAA 4CXUA 2G9YA 1URBA 4GTZA 4TN0A 1ALIA 2D1GA 1KH7A 4UOPA 3M8YA 3IGZB 4CYSA 4ZG9A 3NKOA 3IGYB 5L0KA 2GSNA 4LRAA 5AJ9A 4ZGAA 5L0BA 1ZEFA 4UPLA 1KH5A 3MK0A 4LR7A 4YR1A 3IDDA 5LRNA 4LRDA 5TJ3A 3NKNA 3BDGB 1KHLA 4KAVA 5IJQA 4ZG7A 5C66A 3ED4A 4GTWA 4KAYA 1P49A 2W5TA 4LRCA 2X98A 1AUKA 1EQJA 2GLQA 5HRTA 3KD8A 1HQAA 4UPKA 1EW2A 1AJDA 1ALKA 1E33P 1O99A 1E3CP 3WAXA 3NKRA 4CXKA 4NWJA 1URAA 4FDJA 5DLWA 2ZKTA 1ANJA 1SHQA 1KH9A 3WBHA 2XR9A 1FSUA 1Y7AA 2W5XA 2QZUA 4MY4A 3UO0A 5EGEA 2W5WA 5GRRA 3A52A 3M8WA 3T02A 2IUCA 2W5SA 4GTYA 4KJDA 1ED9A 2W5QA 4KJGA 5INHA 1O98A 4LQYA 1ANIA 3MK1A 4GTXA 3SZZA 4N7TA 1N2LA 5LQQA 3WAWA 1ELZA 1KHKA 2GSUA 1K7HA 3WAVA 5L0EA 5KXAA
chains in the Genus database with same CATH topology
4UPHA 1KHNA 4LREA 5DLVA 1Y6VA 1EJJA 2VQRA 4NWXA 4QAXA 3UN5A 3SZYA 4LR8A 1KH4A 3DYCA 4UPIA 3T01A 1E2SP 3E2DA 4CXSA 2W5VA 4MIVA 4LRFA 4FDIA 3M8ZA 2W8DA 4UORA 1B8JA 4LR9A 1EW8A 3T00A 1EW9A 2IFYA 3NKMA 5LRMA 2W5RA 3TWZA 1AJCA 3BDHA 2ANHA 2GSOA 1N2KA 3DPCA 3OT9A 4LR2A 3Q3QA 4UOOA 4LRBA 5K4PA 3TX0A 5EGHA 1ALJA 2W8SA 4CYRA 1SHNA 3M7VA 1E1ZP 3UN2A 3UNYA 5IJSA 4MHXA 3NKPA 2GA3A 3NKQA 3BDGA 4ZG6A 1HJKA 5DLTA 4B56A 5GOVA 2XRGA 3MK2A 1AJAA 1ZEBA 1ELXA 1EI6A 4KM4A 1AJBA 1ED8A 1ALHA 3CMRA 2RH6A 3UN3A 3TG0A 3LXQA 2IUCB 3BDFA 3WAYA 1HDHA 1KHJA 1ELYA 1ZEDA 3NVLA 3B5QA 5LIAA 4CXUA 2G9YA 1URBA 4GTZA 4TN0A 1ALIA 2D1GA 1KH7A 4UOPA 3M8YA 3IGZB 4CYSA 4ZG9A 3NKOA 3IGYB 5L0KA 2GSNA 4LRAA 5AJ9A 4ZGAA 5L0BA 1ZEFA 4UPLA 1KH5A 3MK0A 4LR7A 4YR1A 3IDDA 5LRNA 4LRDA 5TJ3A 3NKNA 3BDGB 1KHLA 4KAVA 5IJQA 4ZG7A 5C66A 3ED4A 4GTWA 4KAYA 1P49A 2W5TA 4LRCA 2X98A 1AUKA 1EQJA 2GLQA 5HRTA 3KD8A 1HQAA 4UPKA 1EW2A 1AJDA 1ALKA 1E33P 1O99A 1E3CP 3WAXA 3NKRA 4CXKA 4NWJA 1URAA 4FDJA 5DLWA 2ZKTA 1ANJA 1SHQA 1KH9A 3WBHA 2XR9A 1FSUA 1Y7AA 2W5XA 2QZUA 4MY4A 3UO0A 5EGEA 2W5WA 5GRRA 3A52A 3M8WA 3T02A 2IUCA 2W5SA 4GTYA 4KJDA 1ED9A 2W5QA 4KJGA 5INHA 1O98A 4LQYA 1ANIA 3MK1A 4GTXA 3SZZA 4N7TA 1N2LA 5LQQA 3WAWA 1ELZA 1KHKA 2GSUA 1K7HA 3WAVA 5L0EA 5KXAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UPH A;  1KHN A;  4LRE A;  5DLV A;  1Y6V A;  1EJJ A;  2VQR A;  4NWX A;  4QAX A;  3UN5 A;  3SZY A;  4LR8 A;  1KH4 A;  3DYC A;  4UPI A;  3T01 A;  1E2S P;  3E2D A;  4CXS A;  2W5V A;  4MIV A;  4LRF A;  4FDI A;  3M8Z A;  2W8D A;  4UOR A;  1B8J A;  4LR9 A;  1EW8 A;  3T00 A;  1EW9 A;  2IFY A;  3NKM A;  5LRM A;  2W5R A;  3TWZ A;  1AJC A;  3BDH A;  2ANH A;  2GSO A;  1N2K A;  3DPC A;  3OT9 A;  4LR2 A;  3Q3Q A;  4UOO A;  4LRB A;  5K4P A;  3TX0 A;  5EGH A;  1ALJ A;  2W8S A;  4CYR A;  1SHN A;  3M7V A;  1E1Z P;  3UN2 A;  3UNY A;  5IJS A;  4MHX A;  3NKP A;  2GA3 A;  3NKQ A;  3BDG A;  4ZG6 A;  1HJK A;  5DLT A;  4B56 A;  5GOV A;  2XRG A;  3MK2 A;  1AJA A;  1ZEB A;  1ELX A;  1EI6 A;  4KM4 A;  1AJB A;  1ED8 A;  1ALH A;  3CMR A;  2RH6 A;  3UN3 A;  3TG0 A;  3LXQ A;  2IUC B;  3BDF A;  3WAY A;  1HDH A;  1KHJ A;  1ELY A;  1ZED A;  3NVL A;  3B5Q A;  5LIA A;  4CXU A;  2G9Y A;  1URB A;  4GTZ A;  4TN0 A;  1ALI A;  2D1G A;  1KH7 A;  4UOP A;  3M8Y A;  3IGZ B;  4CYS A;  4ZG9 A;  3NKO A;  3IGY B;  5L0K A;  2GSN A;  4LRA A;  5AJ9 A;  4ZGA A;  5L0B A;  1ZEF A;  4UPL A;  1KH5 A;  3MK0 A;  4LR7 A;  4YR1 A;  3IDD A;  5LRN A;  4LRD A;  5TJ3 A;  3NKN A;  3BDG B;  1KHL A;  4KAV A;  5IJQ A;  4ZG7 A;  5C66 A;  3ED4 A;  4GTW A;  4KAY A;  1P49 A;  2W5T A;  4LRC A;  2X98 A;  1AUK A;  1EQJ A;  2GLQ A;  5HRT A;  3KD8 A;  1HQA A;  4UPK A;  1EW2 A;  1AJD A;  1ALK A;  1E33 P;  1O99 A;  1E3C P;  3WAX A;  3NKR A;  4CXK A;  4NWJ A;  1URA A;  4FDJ A;  5DLW A;  2ZKT A;  1ANJ A;  1SHQ A;  1KH9 A;  3WBH A;  2XR9 A;  1FSU A;  1Y7A A;  2W5X A;  2QZU A;  4MY4 A;  3UO0 A;  5EGE A;  2W5W A;  5GRR A;  3A52 A;  3M8W A;  3T02 A;  2IUC A;  2W5S A;  4GTY A;  4KJD A;  1ED9 A;  2W5Q A;  4KJG A;  5INH A;  1O98 A;  4LQY A;  1ANI A;  3MK1 A;  4GTX A;  3SZZ A;  4N7T A;  1N2L A;  5LQQ A;  3WAW A;  1ELZ A;  1KHK A;  2GSU A;  1K7H A;  3WAV A;  5L0E A;  5KXA A; 
#chains in the Genus database with same CATH topology
 4UPH A;  1KHN A;  4LRE A;  5DLV A;  1Y6V A;  1EJJ A;  2VQR A;  4NWX A;  4QAX A;  3UN5 A;  3SZY A;  4LR8 A;  1KH4 A;  3DYC A;  4UPI A;  3T01 A;  1E2S P;  3E2D A;  4CXS A;  2W5V A;  4MIV A;  4LRF A;  4FDI A;  3M8Z A;  2W8D A;  4UOR A;  1B8J A;  4LR9 A;  1EW8 A;  3T00 A;  1EW9 A;  2IFY A;  3NKM A;  5LRM A;  2W5R A;  3TWZ A;  1AJC A;  3BDH A;  2ANH A;  2GSO A;  1N2K A;  3DPC A;  3OT9 A;  4LR2 A;  3Q3Q A;  4UOO A;  4LRB A;  5K4P A;  3TX0 A;  5EGH A;  1ALJ A;  2W8S A;  4CYR A;  1SHN A;  3M7V A;  1E1Z P;  3UN2 A;  3UNY A;  5IJS A;  4MHX A;  3NKP A;  2GA3 A;  3NKQ A;  3BDG A;  4ZG6 A;  1HJK A;  5DLT A;  4B56 A;  5GOV A;  2XRG A;  3MK2 A;  1AJA A;  1ZEB A;  1ELX A;  1EI6 A;  4KM4 A;  1AJB A;  1ED8 A;  1ALH A;  3CMR A;  2RH6 A;  3UN3 A;  3TG0 A;  3LXQ A;  2IUC B;  3BDF A;  3WAY A;  1HDH A;  1KHJ A;  1ELY A;  1ZED A;  3NVL A;  3B5Q A;  5LIA A;  4CXU A;  2G9Y A;  1URB A;  4GTZ A;  4TN0 A;  1ALI A;  2D1G A;  1KH7 A;  4UOP A;  3M8Y A;  3IGZ B;  4CYS A;  4ZG9 A;  3NKO A;  3IGY B;  5L0K A;  2GSN A;  4LRA A;  5AJ9 A;  4ZGA A;  5L0B A;  1ZEF A;  4UPL A;  1KH5 A;  3MK0 A;  4LR7 A;  4YR1 A;  3IDD A;  5LRN A;  4LRD A;  5TJ3 A;  3NKN A;  3BDG B;  1KHL A;  4KAV A;  5IJQ A;  4ZG7 A;  5C66 A;  3ED4 A;  4GTW A;  4KAY A;  1P49 A;  2W5T A;  4LRC A;  2X98 A;  1AUK A;  1EQJ A;  2GLQ A;  5HRT A;  3KD8 A;  1HQA A;  4UPK A;  1EW2 A;  1AJD A;  1ALK A;  1E33 P;  1O99 A;  1E3C P;  3WAX A;  3NKR A;  4CXK A;  4NWJ A;  1URA A;  4FDJ A;  5DLW A;  2ZKT A;  1ANJ A;  1SHQ A;  1KH9 A;  3WBH A;  2XR9 A;  1FSU A;  1Y7A A;  2W5X A;  2QZU A;  4MY4 A;  3UO0 A;  5EGE A;  2W5W A;  5GRR A;  3A52 A;  3M8W A;  3T02 A;  2IUC A;  2W5S A;  4GTY A;  4KJD A;  1ED9 A;  2W5Q A;  4KJG A;  5INH A;  1O98 A;  4LQY A;  1ANI A;  3MK1 A;  4GTX A;  3SZZ A;  4N7T A;  1N2L A;  5LQQ A;  3WAW A;  1ELZ A;  1KHK A;  2GSU A;  1K7H A;  3WAV A;  5L0E A;  5KXA A; 
#chains in the Genus database with same CATH homology
 4UPH A;  1KHN A;  4LRE A;  5DLV A;  1Y6V A;  1EJJ A;  2VQR A;  4NWX A;  4QAX A;  3UN5 A;  3SZY A;  4LR8 A;  1KH4 A;  3DYC A;  4UPI A;  3T01 A;  1E2S P;  3E2D A;  4CXS A;  2W5V A;  4MIV A;  4LRF A;  4FDI A;  3M8Z A;  2W8D A;  4UOR A;  1B8J A;  4LR9 A;  1EW8 A;  3T00 A;  1EW9 A;  2IFY A;  3NKM A;  5LRM A;  2W5R A;  3TWZ A;  1AJC A;  3BDH A;  2ANH A;  2GSO A;  1N2K A;  3DPC A;  3OT9 A;  4LR2 A;  3Q3Q A;  4UOO A;  4LRB A;  5K4P A;  3TX0 A;  5EGH A;  1ALJ A;  2W8S A;  4CYR A;  1SHN A;  3M7V A;  1E1Z P;  3UN2 A;  3UNY A;  5IJS A;  4MHX A;  3NKP A;  2GA3 A;  3NKQ A;  3BDG A;  4ZG6 A;  1HJK A;  5DLT A;  4B56 A;  5GOV A;  2XRG A;  3MK2 A;  1AJA A;  1ZEB A;  1ELX A;  1EI6 A;  4KM4 A;  1AJB A;  1ED8 A;  1ALH A;  3CMR A;  2RH6 A;  3UN3 A;  3TG0 A;  3LXQ A;  2IUC B;  3BDF A;  3WAY A;  1HDH A;  1KHJ A;  1ELY A;  1ZED A;  3NVL A;  3B5Q A;  5LIA A;  4CXU A;  2G9Y A;  1URB A;  4GTZ A;  4TN0 A;  1ALI A;  2D1G A;  1KH7 A;  4UOP A;  3M8Y A;  3IGZ B;  4CYS A;  4ZG9 A;  3NKO A;  3IGY B;  5L0K A;  2GSN A;  4LRA A;  5AJ9 A;  4ZGA A;  5L0B A;  1ZEF A;  4UPL A;  1KH5 A;  3MK0 A;  4LR7 A;  4YR1 A;  3IDD A;  5LRN A;  4LRD A;  5TJ3 A;  3NKN A;  3BDG B;  1KHL A;  4KAV A;  5IJQ A;  4ZG7 A;  5C66 A;  3ED4 A;  4GTW A;  4KAY A;  1P49 A;  2W5T A;  4LRC A;  2X98 A;  1AUK A;  1EQJ A;  2GLQ A;  5HRT A;  3KD8 A;  1HQA A;  4UPK A;  1EW2 A;  1AJD A;  1ALK A;  1E33 P;  1O99 A;  1E3C P;  3WAX A;  3NKR A;  4CXK A;  4NWJ A;  1URA A;  4FDJ A;  5DLW A;  2ZKT A;  1ANJ A;  1SHQ A;  1KH9 A;  3WBH A;  2XR9 A;  1FSU A;  1Y7A A;  2W5X A;  2QZU A;  4MY4 A;  3UO0 A;  5EGE A;  2W5W A;  5GRR A;  3A52 A;  3M8W A;  3T02 A;  2IUC A;  2W5S A;  4GTY A;  4KJD A;  1ED9 A;  2W5Q A;  4KJG A;  5INH A;  1O98 A;  4LQY A;  1ANI A;  3MK1 A;  4GTX A;  3SZZ A;  4N7T A;  1N2L A;  5LQQ A;  3WAW A;  1ELZ A;  1KHK A;  2GSU A;  1K7H A;  3WAV A;  5L0E A;  5KXA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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