1AONA

Crystal structure of the asymmetric chaperonin complex groel/groes/(adp)7
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
524
structure length
524
Chain Sequence
AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Complex (groel/groes)
molecule keywords GROEL
publication title The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex.
pubmed doi rcsb
source organism Escherichia coli
total genus 168
structure length 524
sequence length 524
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date 1997-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00118 Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.560.10 Mainly Alpha Orthogonal Bundle GROEL; domain 1 GroEL-like equatorial domain 1aonA01
3.30.260.10 Alpha Beta 2-Layer Sandwich GROEL; domain 2 TCP-1-like chaperonin intermediate domain 1aonA02
3.50.7.10 Alpha Beta 3-Layer(bba) Sandwich GroEL GroEL 1aonA03
1MNFA 3RTKA 1FYAA 1KP8A 1PCQA 4KI8A 4XCDA 1ASXA 3M6CA 1AONA 2NWCA 3RUSA 1XCKA 3VZ8A 4WSCA 3KO1A 4HELA 4PKOA 3RUWA 1Q2VA 1SRVA 1A6EA 4XCGA 1SS8A 1GRLA 1KIDA 1SX4A 1ASSA 1A6EB 1GMLA 4XCGB 3VZ6A 3AQ1B 1DKDA 1A6DA 1IOKA 4PKNA 3KFEA 3KFBA 1GN1A 1PF9A 1Q3SA 2EU1A 3RUQA 1Q3RA 4XCIB 3E76A 1Q3QA 1LA1A 1SVTA 3KTTB 1A6DB 1FY9A 1JONA 1OELA 3RUVA 3OSXA 3VZ7A 5CDIA 5CDKA 5CDJA 1DK7A 4PJ1A 1E0RB 3WVLA 4WGLA 1SJPA 1SX3A
chains in the Genus database with same CATH superfamily
1MNFA 3RTKA 1FYAA 1KP8A 1PCQA 4KI8A 4XCDA 1ASXA 3M6CA 1AONA 2NWCA 3RUSA 1XCKA 3VZ8A 4WSCA 3KO1A 4HELA 4PKOA 3RUWA 1Q2VA 1SRVA 1A6EA 4XCGA 1SS8A 1GRLA 1KIDA 1SX4A 4MO1A 1ASSA 1A6EB 1GMLA 4XCGB 3VZ6A 3AQ1B 1DKDA 1A6DA 1IOKA 4PKNA 3KFEA 3KFBA 1GN1A 1PF9A 1Q3SA 2EU1A 3RUQA 1Q3RA 4XCIB 3E76A 1Q3QA 1LA1A 1SVTA 3KTTB 1A6DB 1FY9A 1JONA 1OELA 3RUVA 3OSXA 3VZ7A 5CDIA 5CDKA 5CDJA 1DK7A 4PJ1A 1E0RB 3WVLA 4WGLA 1SJPA 1SX3A
chains in the Genus database with same CATH topology
1MNFA 3RTKA 1FYAA 1KP8A 1PCQA 4KI8A 4XCDA 1ASXA 3M6CA 1AONA 2NWCA 3RUSA 1XCKA 3VZ8A 4WSCA 3KO1A 4HELA 4PKOA 3RUWA 1Q2VA 1SRVA 1A6EA 4XCGA 1SS8A 1GRLA 1KIDA 1SX4A 1ASSA 1A6EB 1GMLA 4XCGB 3VZ6A 3AQ1B 1DKDA 1A6DA 1IOKA 4PKNA 3KFEA 3KFBA 1GN1A 1PF9A 1Q3SA 2EU1A 3RUQA 1Q3RA 4XCIB 3E76A 1Q3QA 1LA1A 1SVTA 3KTTB 1A6DB 1FY9A 1JONA 1OELA 3RUVA 3OSXA 3VZ7A 5CDIA 5CDKA 5CDJA 1DK7A 4PJ1A 1E0RB 3WVLA 4WGLA 1SJPA 1SX3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MNF A;  3RTK A;  1FYA A;  1KP8 A;  1PCQ A;  4KI8 A;  4XCD A;  1ASX A;  3M6C A;  1AON A;  2NWC A;  3RUS A;  1XCK A;  3VZ8 A;  4WSC A;  3KO1 A;  4HEL A;  4PKO A;  3RUW A;  1Q2V A;  1SRV A;  1A6E A;  4XCG A;  1SS8 A;  1GRL A;  1KID A;  1SX4 A;  1ASS A;  1A6E B;  1GML A;  4XCG B;  3VZ6 A;  3AQ1 B;  1DKD A;  1A6D A;  1IOK A;  4PKN A;  3KFE A;  3KFB A;  1GN1 A;  1PF9 A;  1Q3S A;  2EU1 A;  3RUQ A;  1Q3R A;  4XCI B;  3E76 A;  1Q3Q A;  1LA1 A;  1SVT A;  3KTT B;  1A6D B;  1FY9 A;  1JON A;  1OEL A;  3RUV A;  3OSX A;  3VZ7 A;  5CDI A;  5CDK A;  5CDJ A;  1DK7 A;  4PJ1 A;  1E0R B;  3WVL A;  4WGL A;  1SJP A;  1SX3 A; 
#chains in the Genus database with same CATH topology
 1MNF A;  3RTK A;  1FYA A;  1KP8 A;  1PCQ A;  4KI8 A;  4XCD A;  1ASX A;  3M6C A;  1AON A;  2NWC A;  3RUS A;  1XCK A;  3VZ8 A;  4WSC A;  3KO1 A;  4HEL A;  4PKO A;  3RUW A;  1Q2V A;  1SRV A;  1A6E A;  4XCG A;  1SS8 A;  1GRL A;  1KID A;  1SX4 A;  4MO1 A;  1ASS A;  1A6E B;  1GML A;  4XCG B;  3VZ6 A;  3AQ1 B;  1DKD A;  1A6D A;  1IOK A;  4PKN A;  3KFE A;  3KFB A;  1GN1 A;  1PF9 A;  1Q3S A;  2EU1 A;  3RUQ A;  1Q3R A;  4XCI B;  3E76 A;  1Q3Q A;  1LA1 A;  1SVT A;  3KTT B;  1A6D B;  1FY9 A;  1JON A;  1OEL A;  3RUV A;  3OSX A;  3VZ7 A;  5CDI A;  5CDK A;  5CDJ A;  1DK7 A;  4PJ1 A;  1E0R B;  3WVL A;  4WGL A;  1SJP A;  1SX3 A; 
#chains in the Genus database with same CATH homology
 1MNF A;  3RTK A;  1FYA A;  1KP8 A;  1PCQ A;  4KI8 A;  4XCD A;  1ASX A;  3M6C A;  1AON A;  2NWC A;  3RUS A;  1XCK A;  3VZ8 A;  4WSC A;  3KO1 A;  4HEL A;  4PKO A;  3RUW A;  1Q2V A;  1SRV A;  1A6E A;  4XCG A;  1SS8 A;  1GRL A;  1KID A;  1SX4 A;  1ASS A;  1A6E B;  1GML A;  4XCG B;  3VZ6 A;  3AQ1 B;  1DKD A;  1A6D A;  1IOK A;  4PKN A;  3KFE A;  3KFB A;  1GN1 A;  1PF9 A;  1Q3S A;  2EU1 A;  3RUQ A;  1Q3R A;  4XCI B;  3E76 A;  1Q3Q A;  1LA1 A;  1SVT A;  3KTT B;  1A6D B;  1FY9 A;  1JON A;  1OEL A;  3RUV A;  3OSX A;  3VZ7 A;  5CDI A;  5CDK A;  5CDJ A;  1DK7 A;  4PJ1 A;  1E0R B;  3WVL A;  4WGL A;  1SJP A;  1SX3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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