1ATXA

Three-dimensional structure of the neurotoxin atx ia from anemonia sulcata in aqueous solution determined by nuclear magnetic resonance spectroscopy
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
GAACLCKSDGPNTRGNSMSGTIWVFGCPSGWNNCEGRAIIGYCCKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sea anemone toxin
molecule keywords ATX IA
publication title Three-dimensional structure of the neurotoxin ATX Ia from Anemonia sulcata in aqueous solution determined by nuclear magnetic resonance spectroscopy.
pubmed doi rcsb
source organism Anemonia sulcata
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 1990-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00706 Toxin_4 Anenome neurotoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 1atxA00
1AHLA 2H9XA 1ZUFA 1ZLHB 2MN3A 2MUBA 2RNGA 1WQKA 1BDSA 2BDSA 3LMSB 1ATXA 4GV5A 1ZUEA 1SHIA 3D4UB 1ZLIB 1D6BA 1SH1A 2SH1A 1B8WA 2JTOA 1APFA 1WXNA 1Z99A 2K2XA 1H5OA
chains in the Genus database with same CATH superfamily
2QSHA 1AHLA 2JR3A 2H9XA 2B9KA 1GKUB 2QSGA 1ZUFA 1ZLHB 2HJEA 2MN3A 2MUBA 3IF4A 2RNGA 1EL6A 1WQKA 1BDSA 2BDSA 3LMSB 3C30A 2IKEA 2QSFA 4GV5A 1ATXA 1ZUEA 1SHIA 3MCXA 3D4UB 1ZLIB 1GL9B 2HJ9C 1D6BA 1SH1A 3C38A 2SH1A 4YIRA 1B8WA 2IKDA 2DLAA 2JTOA 2XXLA 1APFA 1WXNA 1Z99A 3KEZA 2K2XA 1ZHHB 1H5OA 3MYVA
chains in the Genus database with same CATH topology
2QSHA 1AHLA 2JR3A 2H9XA 2B9KA 2QSGA 1ZUFA 1ZLHB 2HJEA 2MN3A 2MUBA 2RNGA 1WQKA 1BDSA 2BDSA 3LMSB 3C30A 2IKEA 2QSFA 4GV5A 1ATXA 1ZUEA 1SHIA 3MCXA 3D4UB 1ZLIB 2HJ9C 1D6BA 1SH1A 3C38A 2SH1A 4YIRA 1B8WA 2IKDA 2DLAA 2JTOA 2XXLA 1APFA 1WXNA 1Z99A 3KEZA 2K2XA 1ZHHB 1H5OA 3MYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHL A;  2H9X A;  1ZUF A;  1ZLH B;  2MN3 A;  2MUB A;  2RNG A;  1WQK A;  1BDS A;  2BDS A;  3LMS B;  1ATX A;  4GV5 A;  1ZUE A;  1SHI A;  3D4U B;  1ZLI B;  1D6B A;  1SH1 A;  2SH1 A;  1B8W A;  2JTO A;  1APF A;  1WXN A;  1Z99 A;  2K2X A;  1H5O A; 
#chains in the Genus database with same CATH topology
 2QSH A;  1AHL A;  2JR3 A;  2H9X A;  2B9K A;  1GKU B;  2QSG A;  1ZUF A;  1ZLH B;  2HJE A;  2MN3 A;  2MUB A;  3IF4 A;  2RNG A;  1EL6 A;  1WQK A;  1BDS A;  2BDS A;  3LMS B;  3C30 A;  2IKE A;  2QSF A;  4GV5 A;  1ATX A;  1ZUE A;  1SHI A;  3MCX A;  3D4U B;  1ZLI B;  1GL9 B;  2HJ9 C;  1D6B A;  1SH1 A;  3C38 A;  2SH1 A;  4YIR A;  1B8W A;  2IKD A;  2DLA A;  2JTO A;  2XXL A;  1APF A;  1WXN A;  1Z99 A;  3KEZ A;  2K2X A;  1ZHH B;  1H5O A;  3MYV A; 
#chains in the Genus database with same CATH homology
 2QSH A;  1AHL A;  2JR3 A;  2H9X A;  2B9K A;  2QSG A;  1ZUF A;  1ZLH B;  2HJE A;  2MN3 A;  2MUB A;  2RNG A;  1WQK A;  1BDS A;  2BDS A;  3LMS B;  3C30 A;  2IKE A;  2QSF A;  4GV5 A;  1ATX A;  1ZUE A;  1SHI A;  3MCX A;  3D4U B;  1ZLI B;  2HJ9 C;  1D6B A;  1SH1 A;  3C38 A;  2SH1 A;  4YIR A;  1B8W A;  2IKD A;  2DLA A;  2JTO A;  2XXL A;  1APF A;  1WXN A;  1Z99 A;  3KEZ A;  2K2X A;  1ZHH B;  1H5O A;  3MYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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