1BV2A

Lipid transfer protein from rice seeds, nmr, 14 structures
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
91
structure length
91
Chain Sequence
ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lipid binding protein
molecule keywords NONSPECIFIC LIPID TRANSFER PROTEIN
publication title Solution structure of a lipid transfer protein extracted from rice seeds. Comparison with homologous proteins.
pubmed doi rcsb
total genus 24
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 1998-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1bv2A00
1SM7A 1BFAA 1BIPA 1FK3A 1T12A 1FK6A 1W2QA 1AFHA 1UVCA 1PSYA 3GSHA 1FK4A 1BE2A 1JTBA 2RKNA 1BV2A 1GH1A 2N81A 1FK5A 1PNBB 1S6DA 5DOMA 2MALA 1HYPA 1RZLA 1FK0A 4XUWA 1FK1A 1B1UA 2DS2B 1BEAA 2ALGA 1MZLA 1L6HA 1UVAA 1SIYA 1N89A 4CVWC 1FK7A 1TMQB 1BWOA 1HSSA 1MZMA 1MIDA 2N2ZA 1CZ2A 1UVBA 1FK2A 1TUKA 2LVFA 2B5SA 1LIPA
chains in the Genus database with same CATH superfamily
1SM7A 1BFAA 1BIPA 1FK3A 1T12A 2VKZG 1FK6A 1W2QA 3H3AA 1AFHA 2UV8G 3H37A 1UVCA 1PSYA 3GSHA 1FK4A 1BE2A 1JTBA 2RKNA 1BV2A 1GH1A 2N81A 1FK5A 1PNBB 1S6DA 5DOMA 2MALA 1HYPA 1RZLA 1FK0A 1MIWA 1MIYA 4XUWA 1FK1A 1B1UA 2DS2B 1BEAA 1MIVA 1MZLA 2ALGA 1L6HA 1UVAA 1SIYA 1N89A 4CVWC 1FK7A 1TMQB 1BWOA 1HSSA 1MZMA 1MIDA 3HMJG 2N2ZA 1CZ2A 1UVBA 1FK2A 1TUKA 2LVFA 2B5SA 1LIPA
chains in the Genus database with same CATH topology
1SM7A 1BFAA 1BIPA 1FK3A 1T12A 1FK6A 1W2QA 1AFHA 1UVCA 1PSYA 3GSHA 1FK4A 1BE2A 1JTBA 2RKNA 1BV2A 1GH1A 2N81A 1FK5A 1PNBB 1S6DA 5DOMA 2MALA 1HYPA 1RZLA 1FK0A 4XUWA 1FK1A 1B1UA 2DS2B 1BEAA 2ALGA 1MZLA 1L6HA 1UVAA 1SIYA 1N89A 4CVWC 1FK7A 1TMQB 1BWOA 1HSSA 1MZMA 1MIDA 2N2ZA 1CZ2A 1UVBA 1FK2A 1TUKA 2LVFA 2B5SA 1LIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SM7 A;  1BFA A;  1BIP A;  1FK3 A;  1T12 A;  1FK6 A;  1W2Q A;  1AFH A;  1UVC A;  1PSY A;  3GSH A;  1FK4 A;  1BE2 A;  1JTB A;  2RKN A;  1BV2 A;  1GH1 A;  2N81 A;  1FK5 A;  1PNB B;  1S6D A;  5DOM A;  2MAL A;  1HYP A;  1RZL A;  1FK0 A;  4XUW A;  1FK1 A;  1B1U A;  2DS2 B;  1BEA A;  2ALG A;  1MZL A;  1L6H A;  1UVA A;  1SIY A;  1N89 A;  4CVW C;  1FK7 A;  1TMQ B;  1BWO A;  1HSS A;  1MZM A;  1MID A;  2N2Z A;  1CZ2 A;  1UVB A;  1FK2 A;  1TUK A;  2LVF A;  2B5S A;  1LIP A; 
#chains in the Genus database with same CATH topology
 1SM7 A;  1BFA A;  1BIP A;  1FK3 A;  1T12 A;  2VKZ G;  1FK6 A;  1W2Q A;  3H3A A;  1AFH A;  2UV8 G;  3H37 A;  1UVC A;  1PSY A;  3GSH A;  1FK4 A;  1BE2 A;  1JTB A;  2RKN A;  1BV2 A;  1GH1 A;  2N81 A;  1FK5 A;  1PNB B;  1S6D A;  5DOM A;  2MAL A;  1HYP A;  1RZL A;  1FK0 A;  1MIW A;  1MIY A;  4XUW A;  1FK1 A;  1B1U A;  2DS2 B;  1BEA A;  1MIV A;  1MZL A;  2ALG A;  1L6H A;  1UVA A;  1SIY A;  1N89 A;  4CVW C;  1FK7 A;  1TMQ B;  1BWO A;  1HSS A;  1MZM A;  1MID A;  3HMJ G;  2N2Z A;  1CZ2 A;  1UVB A;  1FK2 A;  1TUK A;  2LVF A;  2B5S A;  1LIP A; 
#chains in the Genus database with same CATH homology
 1SM7 A;  1BFA A;  1BIP A;  1FK3 A;  1T12 A;  1FK6 A;  1W2Q A;  1AFH A;  1UVC A;  1PSY A;  3GSH A;  1FK4 A;  1BE2 A;  1JTB A;  2RKN A;  1BV2 A;  1GH1 A;  2N81 A;  1FK5 A;  1PNB B;  1S6D A;  5DOM A;  2MAL A;  1HYP A;  1RZL A;  1FK0 A;  4XUW A;  1FK1 A;  1B1U A;  2DS2 B;  1BEA A;  2ALG A;  1MZL A;  1L6H A;  1UVA A;  1SIY A;  1N89 A;  4CVW C;  1FK7 A;  1TMQ B;  1BWO A;  1HSS A;  1MZM A;  1MID A;  2N2Z A;  1CZ2 A;  1UVB A;  1FK2 A;  1TUK A;  2LVF A;  2B5S A;  1LIP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...