1BW3A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
125
structure length
125
Chain Sequence
b'EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
total genus 22
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw3A00
3X2MA 5GLYA 5GLXA 2PNWA 2G6GA 3X2IA 4FFTA 2PJJA 1OA7A 1BW4A 2PI8A 5H4UA 3CZBA 1BW3A 2KQAA 1HD5A 3M3GA 3SULA 5GM9A 3SUKA 3SUJA 3X2KA 2GAEA 4AVRA 3X2LA 1WC2A 3ENGA 2BH0A 4L48A 4FG2A 3X2PA 4JCWA 4FERA 4ZM7A 3SUMA 1N10A 4FG4A 4JP7A 2AE0X 3X2NA 4JP6A 3X2OA 1OA9A 2PICA 4JJOA 3X2HA 3X2JA 2ENGA 1L8FA 4ENGA 2G5DA 2HCZX 3D30A 4JS7A 3X2GA
chains in the Genus database with same CATH superfamily
3X2MA 1DMRA 3GTJA 2PMZA 5GLYA 2IV2X 1SFOA 2JA5A 1KQGA 1Y1WA 2G6GA 2VPYA 3X2IA 1FDOA 2R93A 3IR6A 2EEOB 5FTJA 4D7ZB 4KLNA 1UHDA 1BW3A 3PLXB 4KO8A 2VPWA 4KODA 4CRYG 1IW7D 2KI8A 4NOHA 5GLFA 3GTGA 4AVRA 1I50A 1OGYA 4RV0A 1WC2A 4KDIA 2B63A 3CQZA 1Y4ZA 3IR7A 3GTQA 3HU3A 2A68D 1E60A 4AZDA 1OA9A 4JJOA 3X2HA 3QWZA 1L8FA 1Y5IA 1R9TA 2HCZX 3D30A 4AAYA 1SMYD 2R7ZA 2BE5D 2VPZA 5GLXA 1UHEA 2JIQA 1AA6A 3GTLA 2JIRA 4CS0A 4FFTA 4CRZA 5FTNA 1BW4A 2PI8A 1YNND 3CZBA 5H4UA 2E2IA 2Y0SA 3SULA 5GM9A 3SUKA 4AOKB 3GTKA 3X2KA 5FTKA 3HKZA 1DMSA 3TIWA 1QDNA 4L48A 3X2PA 4FERA 3IR5A 5DYGA 3SUMA 1TWAA 4JP6A 3X2OA 1R7RA 4C2MA 3OUGA 2A6ED 2ENGA 4DMRA 2A69D 2A6HD 2JIPA 4JS7A 2NAPA 2YUJA 1E5VA 1H0HA 1Q16A 4KDLA 5FTLA 2NVYA 1CR5A 1FDIA 1PYQA 2V45A 3QQ7A 1TMOA 3GTPA 3GTMA 5T5ID 1TWGA 5FTMA 2KQAA 5C1BA 3GTOA 1KQFA 2CW0D 1HD5A 3M3GA 3SUJA 1PQEA 2VUMA 2GAEA 5DYIA 2VPXA 3QQ8A 3HU2A 3ENGA 1PT0A 2BH0A 4GA5A 2WAQA 2V3VA 4GA6A 4JCWA 4QIWA 4ZM7A 1I3QA 1ZYRD 3DMRA 4JP7A 2AE0X 1QCSA 1YLEA 1TWHA 1G8KA 1R27A 3X2JA 2O5JD 1CZ4A 2DMRA 3H0GA 2G5DA 2YU9A 3X2GA 5B6CA 1VC3B 1G8JA 2JIMA 2R92A 3HU1A 1PPYA 1PT1A 2PNWA 1AW8B 3CF2A 1TWCA 1E18A 2JA7A 1S3SA 2PJJA 1OA7A 5T5MD 2C45A 1YNJD 2NVXA 1ZC1A 1Y1VA 2NYAA 4AONB 1E32A 2JA6A 1SIWA 3X2LA 3O5AA 3FKIA 5EPPA 2WB1A 4FG2A 1N10A 4FG4A 3ML1A 1PQFA 5C18A 1EU1A 3X2NA 2PICA 1PYUB 4AYBA 1PQHA 2E7ZA 4ENGA 3TM7B 1TWFA 1H5NA 1E61A 1WCMA 2JIOA 2PJHB 1K83A 3QC8A 2E2HA 1CZ5A 1WLFA
chains in the Genus database with same CATH topology
3X2MA 5GLYA 5GLXA 2PNWA 2G6GA 3X2IA 4FFTA 2PJJA 1OA7A 1BW4A 2PI8A 5H4UA 3CZBA 1BW3A 2KQAA 1HD5A 3M3GA 3SULA 5GM9A 3SUKA 3SUJA 3X2KA 2GAEA 4AVRA 3X2LA 1WC2A 3ENGA 2BH0A 4L48A 4FG2A 3X2PA 4JCWA 4FERA 4ZM7A 3SUMA 1N10A 4FG4A 4JP7A 2AE0X 3X2NA 4JP6A 3X2OA 1OA9A 2PICA 4JJOA 3X2HA 3X2JA 2ENGA 1L8FA 4ENGA 2G5DA 2HCZX 3D30A 4JS7A 3X2GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2M A;  5GLY A;  5GLX A;  2PNW A;  2G6G A;  3X2I A;  4FFT A;  2PJJ A;  1OA7 A;  1BW4 A;  2PI8 A;  5H4U A;  3CZB A;  1BW3 A;  2KQA A;  1HD5 A;  3M3G A;  3SUL A;  5GM9 A;  3SUK A;  3SUJ A;  3X2K A;  2GAE A;  4AVR A;  3X2L A;  1WC2 A;  3ENG A;  2BH0 A;  4L48 A;  4FG2 A;  3X2P A;  4JCW A;  4FER A;  4ZM7 A;  3SUM A;  1N10 A;  4FG4 A;  4JP7 A;  2AE0 X;  3X2N A;  4JP6 A;  3X2O A;  1OA9 A;  2PIC A;  4JJO A;  3X2H A;  3X2J A;  2ENG A;  1L8F A;  4ENG A;  2G5D A;  2HCZ X;  3D30 A;  4JS7 A;  3X2G A; 
#chains in the Genus database with same CATH topology
 3X2M A;  1DMR A;  3GTJ A;  2PMZ A;  5GLY A;  2IV2 X;  1SFO A;  2JA5 A;  1KQG A;  1Y1W A;  2G6G A;  2VPY A;  3X2I A;  1FDO A;  2R93 A;  3IR6 A;  2EEO B;  5FTJ A;  4D7Z B;  4KLN A;  1UHD A;  1BW3 A;  3PLX B;  4KO8 A;  2VPW A;  4KOD A;  4CRY G;  1IW7 D;  2KI8 A;  4NOH A;  5GLF A;  3GTG A;  4AVR A;  1I50 A;  1OGY A;  4RV0 A;  1WC2 A;  4KDI A;  2B63 A;  3CQZ A;  1Y4Z A;  3IR7 A;  3GTQ A;  3HU3 A;  2A68 D;  1E60 A;  4AZD A;  1OA9 A;  4JJO A;  3X2H A;  3QWZ A;  1L8F A;  1Y5I A;  1R9T A;  2HCZ X;  3D30 A;  4AAY A;  1SMY D;  2R7Z A;  2BE5 D;  2VPZ A;  5GLX A;  1UHE A;  2JIQ A;  1AA6 A;  3GTL A;  2JIR A;  4CS0 A;  4FFT A;  4CRZ A;  5FTN A;  1BW4 A;  2PI8 A;  1YNN D;  3CZB A;  5H4U A;  2E2I A;  2Y0S A;  3SUL A;  5GM9 A;  3SUK A;  4AOK B;  3GTK A;  3X2K A;  5FTK A;  3HKZ A;  1DMS A;  3TIW A;  1QDN A;  4L48 A;  3X2P A;  4FER A;  3IR5 A;  5DYG A;  3SUM A;  1TWA A;  4JP6 A;  3X2O A;  1R7R A;  4C2M A;  3OUG A;  2A6E D;  2ENG A;  4DMR A;  2A69 D;  2A6H D;  2JIP A;  4JS7 A;  2NAP A;  2YUJ A;  1E5V A;  1H0H A;  1Q16 A;  4KDL A;  5FTL A;  2NVY A;  1CR5 A;  1FDI A;  1PYQ A;  2V45 A;  3QQ7 A;  1TMO A;  3GTP A;  3GTM A;  5T5I D;  1TWG A;  5FTM A;  2KQA A;  5C1B A;  3GTO A;  1KQF A;  2CW0 D;  1HD5 A;  3M3G A;  3SUJ A;  1PQE A;  2VUM A;  2GAE A;  5DYI A;  2VPX A;  3QQ8 A;  3HU2 A;  3ENG A;  1PT0 A;  2BH0 A;  4GA5 A;  2WAQ A;  2V3V A;  4GA6 A;  4JCW A;  4QIW A;  4ZM7 A;  1I3Q A;  1ZYR D;  3DMR A;  4JP7 A;  2AE0 X;  1QCS A;  1YLE A;  1TWH A;  1G8K A;  1R27 A;  3X2J A;  2O5J D;  1CZ4 A;  2DMR A;  3H0G A;  2G5D A;  2YU9 A;  3X2G A;  5B6C A;  1VC3 B;  1G8J A;  2JIM A;  2R92 A;  3HU1 A;  1PPY A;  1PT1 A;  2PNW A;  1AW8 B;  3CF2 A;  1TWC A;  1E18 A;  2JA7 A;  1S3S A;  2PJJ A;  1OA7 A;  5T5M D;  2C45 A;  1YNJ D;  2NVX A;  1ZC1 A;  1Y1V A;  2NYA A;  4AON B;  1E32 A;  2JA6 A;  1SIW A;  3X2L A;  3O5A A;  3FKI A;  5EPP A;  2WB1 A;  4FG2 A;  1N10 A;  4FG4 A;  3ML1 A;  1PQF A;  5C18 A;  1EU1 A;  3X2N A;  2PIC A;  1PYU B;  4AYB A;  1PQH A;  2E7Z A;  4ENG A;  3TM7 B;  1TWF A;  1H5N A;  1E61 A;  1WCM A;  2JIO A;  2PJH B;  1K83 A;  3QC8 A;  2E2H A;  1CZ5 A;  1WLF A; 
#chains in the Genus database with same CATH homology
 3X2M A;  5GLY A;  5GLX A;  2PNW A;  2G6G A;  3X2I A;  4FFT A;  2PJJ A;  1OA7 A;  1BW4 A;  2PI8 A;  5H4U A;  3CZB A;  1BW3 A;  2KQA A;  1HD5 A;  3M3G A;  3SUL A;  5GM9 A;  3SUK A;  3SUJ A;  3X2K A;  2GAE A;  4AVR A;  3X2L A;  1WC2 A;  3ENG A;  2BH0 A;  4L48 A;  4FG2 A;  3X2P A;  4JCW A;  4FER A;  4ZM7 A;  3SUM A;  1N10 A;  4FG4 A;  4JP7 A;  2AE0 X;  3X2N A;  4JP6 A;  3X2O A;  1OA9 A;  2PIC A;  4JJO A;  3X2H A;  3X2J A;  2ENG A;  1L8F A;  4ENG A;  2G5D A;  2HCZ X;  3D30 A;  4JS7 A;  3X2G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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