1CCQA

Nmr structure with tightly bound water molecules of cytotoxin ii (cardiotoxin) from naja naja oxiana in aqueous solution (minor form).
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
LKCKKLVPLFSKTCPAGKNLCYKMFMVAAPHVPVKRGCIDVCPKSSLLVKYVCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords PROTEIN (CYTOTOXIN 2)
publication title Two forms of cytotoxin II (cardiotoxin) from Naja naja oxiana in aqueous solution: spatial structures with tightly bound water molecules.
pubmed doi rcsb
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1999-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1ccqA00
1UG4A 2GOOC 5DZ5A 1KBSA 1FRAA 1QKEA 3PLCA 2QJBC 2BTXA 4EY8B 1B41B 1IQ9A 2LCRA 2MJYA 1MR6A 3KFDE 2MFAA 2MUPA 2CTXA 1CHVS 2H7ZB 1MAHF 1NYUA 1ERAA 4DO8A 2NBTA 3LAQU 1F94A 2J8BA 1CVOA 1ONJA 1CREA 1FF4A 2MJ4A 1TFSA 1HC9B 3U74U 2H62D 1KU6B 1CDQA 4IYEA 1FSCA 1KXIA 1LX5B 1ERGA 3FEVA 3U73U 2CDXA 1IJCA 1L4WA 2MJ0A 4FAOC 2H62C 2L03A 1S4YA 1KBAA 2PJYB 1BXPA 3NEQA 2H64B 4UY2C 1M9ZA 1NEAA 1V6PA 1KL8A 3BT2U 2CRSA 2PJYC 2N99A 1YWHA 1LXHA 3VTSA 2H64C 6EBXA 4ZQYA 2UX2A 4OM4A 1H0JA 4XJJA 1CDSA 2MHYA 1IDHA 2CRTA 4OM5A 1G6MA 1IDLA 1PLOA 1CXNA 1CCQA 1BTEA 1JE9A 1NYSA 1JBDA 1HAAA 4QTIU 1TXAA 2JQPA 3NDSA 1ES7B 5DO6A 1CRFA 3BT1U 1DRSA 4P7UA 1QM7A 1CTXA 3EVSC 3NH7A 4AEAA 1IKCA 4BDTB 1LXGA 4LFTA 2LA1A 2QC1A 3HH7A 1KS6A 2OFSA 2H5FA 3ERAA 1KBTA 1HC9A 5DU1A 1LJZA 1CXOA 1NTXA 1RL5A 3KFDI 1NXBA 2HLRA 2MUOA 2L5SA 2QJ9C 1KFHA 5EBXA 1CODA 2ERAA 1W6BA 1XT3A 1F8UB 1IK8A 1VB0A 2FD6U 1KTZB 1HAJA 1NORA 2K3GA 1COEA 1IDIA 4HQPF 2VLWA 1KC4A 1JGKA 1RGJA 1LSIA 2X8BB 1FSSB 2H7ZA 1ABTA 1CB9A 5IMTD 2QJAC 3QB4B 1TXBA 4BIKB 4FAOE 1FFJA 1CDRA 2H8UA 2I9BE 2ABXA 1NTNA 1TGXA 1QKDA 1HOYA 2GOOB 3EBXA 2CCXA 4RUDA 5IMYC 1I02A 1REWC 1FASA 2JVEA 2UWRA 1IDGA 1CDTA 2HLQA 2BHIA 1ZADA
chains in the Genus database with same CATH superfamily
1UG4A 2GOOC 5DZ5A 1KBSA 1FRAA 1QKEA 3PLCA 2QJBC 2BTXA 4EY8B 1B41B 1IQ9A 2LCRA 2MJYA 1MR6A 3KFDE 2MFAA 2MUPA 2CTXA 1CHVS 2H7ZB 1MAHF 1NYUA 1ERAA 4DO8A 2NBTA 3LAQU 1F94A 2J8BA 1CVOA 1ONJA 1CREA 1FF4A 2MJ4A 1TFSA 1HC9B 3U74U 2H62D 1KU6B 1CDQA 4IYEA 1FSCA 1KXIA 1LX5B 1ERGA 3FEVA 3U73U 2CDXA 1IJCA 1L4WA 2MJ0A 4FAOC 2H62C 2L03A 1S4YA 1KBAA 2PJYB 1BXPA 3NEQA 2H64B 4UY2C 1M9ZA 1NEAA 1V6PA 1KL8A 3BT2U 2CRSA 2PJYC 2N99A 1YWHA 1LXHA 3VTSA 2H64C 6EBXA 4ZQYA 2UX2A 4OM4A 1H0JA 4XJJA 1CDSA 2MHYA 1IDHA 2CRTA 4OM5A 1G6MA 1IDLA 1PLOA 1CXNA 1CCQA 1BTEA 1JE9A 1NYSA 1JBDA 1HAAA 4QTIU 1TXAA 2JQPA 3NDSA 1ES7B 5DO6A 1CRFA 3BT1U 1DRSA 4P7UA 1QM7A 1CTXA 3EVSC 3NH7A 4AEAA 1IKCA 4BDTB 1LXGA 4LFTA 2LA1A 2QC1A 3HH7A 1KS6A 2OFSA 2H5FA 3ERAA 1KBTA 1HC9A 5DU1A 1LJZA 1CXOA 1NTXA 1RL5A 3KFDI 1NXBA 2HLRA 2MUOA 2L5SA 2QJ9C 1KFHA 5EBXA 1CODA 2ERAA 1W6BA 1XT3A 1F8UB 1IK8A 1VB0A 2FD6U 1KTZB 1HAJA 1NORA 2K3GA 1COEA 1IDIA 4KSNA 4HQPF 2VLWA 1KC4A 1JGKA 1RGJA 1LSIA 2X8BB 1FSSB 2H7ZA 1ABTA 1CB9A 5IMTD 2QJAC 3QB4B 1TXBA 4BIKB 4FAOE 1FFJA 1CDRA 2H8UA 2I9BE 2ABXA 1NTNA 1TGXA 1QKDA 1HOYA 2GOOB 3EBXA 2CCXA 4RUDA 5IMYC 1I02A 1REWC 1FASA 2JVEA 2UWRA 1IDGA 1CDTA 2HLQA 2BHIA 1ZADA
chains in the Genus database with same CATH topology
1UG4A 2GOOC 5DZ5A 1KBSA 1FRAA 1QKEA 3PLCA 2QJBC 2BTXA 4EY8B 1B41B 1IQ9A 2LCRA 2MJYA 1MR6A 3KFDE 2MFAA 2MUPA 2CTXA 1CHVS 2H7ZB 1MAHF 1NYUA 1ERAA 4DO8A 2NBTA 3LAQU 1F94A 2J8BA 1CVOA 1ONJA 1CREA 1FF4A 2MJ4A 1TFSA 1HC9B 3U74U 2H62D 1KU6B 1CDQA 4IYEA 1FSCA 1KXIA 1LX5B 1ERGA 3FEVA 3U73U 2CDXA 1IJCA 1L4WA 2MJ0A 4FAOC 2H62C 2L03A 1S4YA 1KBAA 2PJYB 1BXPA 3NEQA 2H64B 4UY2C 1M9ZA 1NEAA 1V6PA 1KL8A 3BT2U 2CRSA 2PJYC 2N99A 1YWHA 1LXHA 3VTSA 2H64C 6EBXA 4ZQYA 2UX2A 4OM4A 1H0JA 4XJJA 1CDSA 2MHYA 1IDHA 2CRTA 4OM5A 1G6MA 1IDLA 1PLOA 1CXNA 1CCQA 1BTEA 1JE9A 1NYSA 1JBDA 1HAAA 4QTIU 1TXAA 2JQPA 3NDSA 1ES7B 5DO6A 1CRFA 3BT1U 1DRSA 4P7UA 1QM7A 1CTXA 3EVSC 3NH7A 4AEAA 1IKCA 4BDTB 1LXGA 4LFTA 2LA1A 2QC1A 3HH7A 1KS6A 2OFSA 2H5FA 3ERAA 1KBTA 1HC9A 5DU1A 1LJZA 1CXOA 1NTXA 1RL5A 3KFDI 1NXBA 2HLRA 2MUOA 2L5SA 2QJ9C 1KFHA 5EBXA 1CODA 2ERAA 1W6BA 1XT3A 1F8UB 1IK8A 1VB0A 2FD6U 1KTZB 1HAJA 1NORA 2K3GA 1COEA 1IDIA 4KSNA 4HQPF 2VLWA 1KC4A 1JGKA 1RGJA 1LSIA 2X8BB 1FSSB 2H7ZA 1ABTA 1CB9A 5IMTD 2QJAC 3QB4B 1TXBA 4BIKB 4FAOE 1FFJA 1CDRA 2H8UA 2I9BE 2ABXA 1NTNA 1TGXA 1QKDA 1HOYA 2GOOB 3EBXA 2CCXA 4RUDA 5IMYC 1I02A 1REWC 1FASA 2JVEA 2UWRA 1IDGA 1CDTA 2HLQA 2BHIA 1ZADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UG4 A;  2GOO C;  5DZ5 A;  1KBS A;  1FRA A;  1QKE A;  3PLC A;  2QJB C;  2BTX A;  4EY8 B;  1B41 B;  1IQ9 A;  2LCR A;  2MJY A;  1MR6 A;  3KFD E;  2MFA A;  2MUP A;  2CTX A;  1CHV S;  2H7Z B;  1MAH F;  1NYU A;  1ERA A;  4DO8 A;  2NBT A;  3LAQ U;  1F94 A;  2J8B A;  1CVO A;  1ONJ A;  1CRE A;  1FF4 A;  2MJ4 A;  1TFS A;  1HC9 B;  3U74 U;  2H62 D;  1KU6 B;  1CDQ A;  4IYE A;  1FSC A;  1KXI A;  1LX5 B;  1ERG A;  3FEV A;  3U73 U;  2CDX A;  1IJC A;  1L4W A;  2MJ0 A;  4FAO C;  2H62 C;  2L03 A;  1S4Y A;  1KBA A;  2PJY B;  1BXP A;  3NEQ A;  2H64 B;  4UY2 C;  1M9Z A;  1NEA A;  1V6P A;  1KL8 A;  3BT2 U;  2CRS A;  2PJY C;  2N99 A;  1YWH A;  1LXH A;  3VTS A;  2H64 C;  6EBX A;  4ZQY A;  2UX2 A;  4OM4 A;  1H0J A;  4XJJ A;  1CDS A;  2MHY A;  1IDH A;  2CRT A;  4OM5 A;  1G6M A;  1IDL A;  1PLO A;  1CXN A;  1CCQ A;  1BTE A;  1JE9 A;  1NYS A;  1JBD A;  1HAA A;  4QTI U;  1TXA A;  2JQP A;  3NDS A;  1ES7 B;  5DO6 A;  1CRF A;  3BT1 U;  1DRS A;  4P7U A;  1QM7 A;  1CTX A;  3EVS C;  3NH7 A;  4AEA A;  1IKC A;  4BDT B;  1LXG A;  4LFT A;  2LA1 A;  2QC1 A;  3HH7 A;  1KS6 A;  2OFS A;  2H5F A;  3ERA A;  1KBT A;  1HC9 A;  5DU1 A;  1LJZ A;  1CXO A;  1NTX A;  1RL5 A;  3KFD I;  1NXB A;  2HLR A;  2MUO A;  2L5S A;  2QJ9 C;  1KFH A;  5EBX A;  1COD A;  2ERA A;  1W6B A;  1XT3 A;  1F8U B;  1IK8 A;  1VB0 A;  2FD6 U;  1KTZ B;  1HAJ A;  1NOR A;  2K3G A;  1COE A;  1IDI A;  4HQP F;  2VLW A;  1KC4 A;  1JGK A;  1RGJ A;  1LSI A;  2X8B B;  1FSS B;  2H7Z A;  1ABT A;  1CB9 A;  5IMT D;  2QJA C;  3QB4 B;  1TXB A;  4BIK B;  4FAO E;  1FFJ A;  1CDR A;  2H8U A;  2I9B E;  2ABX A;  1NTN A;  1TGX A;  1QKD A;  1HOY A;  2GOO B;  3EBX A;  2CCX A;  4RUD A;  5IMY C;  1I02 A;  1REW C;  1FAS A;  2JVE A;  2UWR A;  1IDG A;  1CDT A;  2HLQ A;  2BHI A;  1ZAD A; 
#chains in the Genus database with same CATH topology
 1UG4 A;  2GOO C;  5DZ5 A;  1KBS A;  1FRA A;  1QKE A;  3PLC A;  2QJB C;  2BTX A;  4EY8 B;  1B41 B;  1IQ9 A;  2LCR A;  2MJY A;  1MR6 A;  3KFD E;  2MFA A;  2MUP A;  2CTX A;  1CHV S;  2H7Z B;  1MAH F;  1NYU A;  1ERA A;  4DO8 A;  2NBT A;  3LAQ U;  1F94 A;  2J8B A;  1CVO A;  1ONJ A;  1CRE A;  1FF4 A;  2MJ4 A;  1TFS A;  1HC9 B;  3U74 U;  2H62 D;  1KU6 B;  1CDQ A;  4IYE A;  1FSC A;  1KXI A;  1LX5 B;  1ERG A;  3FEV A;  3U73 U;  2CDX A;  1IJC A;  1L4W A;  2MJ0 A;  4FAO C;  2H62 C;  2L03 A;  1S4Y A;  1KBA A;  2PJY B;  1BXP A;  3NEQ A;  2H64 B;  4UY2 C;  1M9Z A;  1NEA A;  1V6P A;  1KL8 A;  3BT2 U;  2CRS A;  2PJY C;  2N99 A;  1YWH A;  1LXH A;  3VTS A;  2H64 C;  6EBX A;  4ZQY A;  2UX2 A;  4OM4 A;  1H0J A;  4XJJ A;  1CDS A;  2MHY A;  1IDH A;  2CRT A;  4OM5 A;  1G6M A;  1IDL A;  1PLO A;  1CXN A;  1CCQ A;  1BTE A;  1JE9 A;  1NYS A;  1JBD A;  1HAA A;  4QTI U;  1TXA A;  2JQP A;  3NDS A;  1ES7 B;  5DO6 A;  1CRF A;  3BT1 U;  1DRS A;  4P7U A;  1QM7 A;  1CTX A;  3EVS C;  3NH7 A;  4AEA A;  1IKC A;  4BDT B;  1LXG A;  4LFT A;  2LA1 A;  2QC1 A;  3HH7 A;  1KS6 A;  2OFS A;  2H5F A;  3ERA A;  1KBT A;  1HC9 A;  5DU1 A;  1LJZ A;  1CXO A;  1NTX A;  1RL5 A;  3KFD I;  1NXB A;  2HLR A;  2MUO A;  2L5S A;  2QJ9 C;  1KFH A;  5EBX A;  1COD A;  2ERA A;  1W6B A;  1XT3 A;  1F8U B;  1IK8 A;  1VB0 A;  2FD6 U;  1KTZ B;  1HAJ A;  1NOR A;  2K3G A;  1COE A;  1IDI A;  4KSN A;  4HQP F;  2VLW A;  1KC4 A;  1JGK A;  1RGJ A;  1LSI A;  2X8B B;  1FSS B;  2H7Z A;  1ABT A;  1CB9 A;  5IMT D;  2QJA C;  3QB4 B;  1TXB A;  4BIK B;  4FAO E;  1FFJ A;  1CDR A;  2H8U A;  2I9B E;  2ABX A;  1NTN A;  1TGX A;  1QKD A;  1HOY A;  2GOO B;  3EBX A;  2CCX A;  4RUD A;  5IMY C;  1I02 A;  1REW C;  1FAS A;  2JVE A;  2UWR A;  1IDG A;  1CDT A;  2HLQ A;  2BHI A;  1ZAD A; 
#chains in the Genus database with same CATH homology
 1UG4 A;  2GOO C;  5DZ5 A;  1KBS A;  1FRA A;  1QKE A;  3PLC A;  2QJB C;  2BTX A;  4EY8 B;  1B41 B;  1IQ9 A;  2LCR A;  2MJY A;  1MR6 A;  3KFD E;  2MFA A;  2MUP A;  2CTX A;  1CHV S;  2H7Z B;  1MAH F;  1NYU A;  1ERA A;  4DO8 A;  2NBT A;  3LAQ U;  1F94 A;  2J8B A;  1CVO A;  1ONJ A;  1CRE A;  1FF4 A;  2MJ4 A;  1TFS A;  1HC9 B;  3U74 U;  2H62 D;  1KU6 B;  1CDQ A;  4IYE A;  1FSC A;  1KXI A;  1LX5 B;  1ERG A;  3FEV A;  3U73 U;  2CDX A;  1IJC A;  1L4W A;  2MJ0 A;  4FAO C;  2H62 C;  2L03 A;  1S4Y A;  1KBA A;  2PJY B;  1BXP A;  3NEQ A;  2H64 B;  4UY2 C;  1M9Z A;  1NEA A;  1V6P A;  1KL8 A;  3BT2 U;  2CRS A;  2PJY C;  2N99 A;  1YWH A;  1LXH A;  3VTS A;  2H64 C;  6EBX A;  4ZQY A;  2UX2 A;  4OM4 A;  1H0J A;  4XJJ A;  1CDS A;  2MHY A;  1IDH A;  2CRT A;  4OM5 A;  1G6M A;  1IDL A;  1PLO A;  1CXN A;  1CCQ A;  1BTE A;  1JE9 A;  1NYS A;  1JBD A;  1HAA A;  4QTI U;  1TXA A;  2JQP A;  3NDS A;  1ES7 B;  5DO6 A;  1CRF A;  3BT1 U;  1DRS A;  4P7U A;  1QM7 A;  1CTX A;  3EVS C;  3NH7 A;  4AEA A;  1IKC A;  4BDT B;  1LXG A;  4LFT A;  2LA1 A;  2QC1 A;  3HH7 A;  1KS6 A;  2OFS A;  2H5F A;  3ERA A;  1KBT A;  1HC9 A;  5DU1 A;  1LJZ A;  1CXO A;  1NTX A;  1RL5 A;  3KFD I;  1NXB A;  2HLR A;  2MUO A;  2L5S A;  2QJ9 C;  1KFH A;  5EBX A;  1COD A;  2ERA A;  1W6B A;  1XT3 A;  1F8U B;  1IK8 A;  1VB0 A;  2FD6 U;  1KTZ B;  1HAJ A;  1NOR A;  2K3G A;  1COE A;  1IDI A;  4KSN A;  4HQP F;  2VLW A;  1KC4 A;  1JGK A;  1RGJ A;  1LSI A;  2X8B B;  1FSS B;  2H7Z A;  1ABT A;  1CB9 A;  5IMT D;  2QJA C;  3QB4 B;  1TXB A;  4BIK B;  4FAO E;  1FFJ A;  1CDR A;  2H8U A;  2I9B E;  2ABX A;  1NTN A;  1TGX A;  1QKD A;  1HOY A;  2GOO B;  3EBX A;  2CCX A;  4RUD A;  5IMY C;  1I02 A;  1REW C;  1FAS A;  2JVE A;  2UWR A;  1IDG A;  1CDT A;  2HLQ A;  2BHI A;  1ZAD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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