1COPD

Three-dimensional dimer structure of the lambda-cro repressor in solution as determined by heteronuclear multidimensional nmr
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
66
structure length
66
Chain Sequence
MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNKKTTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulating protein
molecule keywords CRO REPRESSOR
publication title Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR.
pubmed doi rcsb
source organism Enterobacteria phage lambda
total genus 13
structure length 66
sequence length 66
chains with identical sequence E
ec nomenclature
pdb deposition date 1995-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF09048 Cro Cro
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.240.10 Alpha Beta 2-Layer Sandwich CRO Repressor CRO Repressor 1copD00
2ECSA 3ORCA 1COPD 2A63A 1D1LA 1ORCA 2OVGA 6CROA 2CW1A 2ORCA 5CROA 1D1MA
chains in the Genus database with same CATH superfamily
3ORCA 3C6FA 1D1LA 1ORCA 2LJYA 2FK4A 2ECSA 1COPD 2A63A 4GIZC 5CROA 4XR8F 6CROA 2OVGA 2CW1A 1WU7A 1D1MA 2LJZA 2LJXA 2ORCA 2M3LA
chains in the Genus database with same CATH topology
3ORCA 1D1LA 1ORCA 2LJYA 2FK4A 2ECSA 1COPD 2A63A 4GIZC 5CROA 4XR8F 6CROA 2OVGA 2CW1A 1WU7A 1D1MA 2LJZA 2LJXA 2ORCA 2M3LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ECS A;  3ORC A;  1COP D;  2A63 A;  1D1L A;  1ORC A;  2OVG A;  6CRO A;  2CW1 A;  2ORC A;  5CRO A;  1D1M A; 
#chains in the Genus database with same CATH topology
 3ORC A;  3C6F A;  1D1L A;  1ORC A;  2LJY A;  2FK4 A;  2ECS A;  1COP D;  2A63 A;  4GIZ C;  5CRO A;  4XR8 F;  6CRO A;  2OVG A;  2CW1 A;  1WU7 A;  1D1M A;  2LJZ A;  2LJX A;  2ORC A;  2M3L A; 
#chains in the Genus database with same CATH homology
 3ORC A;  1D1L A;  1ORC A;  2LJY A;  2FK4 A;  2ECS A;  1COP D;  2A63 A;  4GIZ C;  5CRO A;  4XR8 F;  6CRO A;  2OVG A;  2CW1 A;  1WU7 A;  1D1M A;  2LJZ A;  2LJX A;  2ORC A;  2M3L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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