1CZ5A

Nmr structure of vat-n: the n-terminal domain of vat (vcp-like atpase of thermoplasma)
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
185
structure length
185
Chain Sequence
MESNNGIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIREEPASEVLEEGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords VCP-LIKE ATPASE
publication title The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element.
pubmed doi rcsb
source organism Thermoplasma acidophilum
total genus 23
structure length 185
sequence length 185
ec nomenclature
pdb deposition date 1999-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1cz5A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 1cz5A02
3HU2A 1Y1WA 3CQZA 4C2MA 4DMRA 5DYGA 3OUGA 3DMRA 3TIWA 4KDIA 4KODA 5GLFA 5T5ID 1H5NA 1QCSA 3CF2A 1PT1A 4AYBA 1FDOA 1CR5A 5C1BA 2Y0SA 1KQGA 1S3SA 2PMZA 5FTMA 3IR5A 2VPXA 1E5VA 2VPZA 2R7ZA 2JIQA 1K83A 4KDLA 2VPYA 1EU1A 2JIOA 2B63A 2NVXA 1I3QA 2JA6A 3QQ7A 1CZ5A 4KO8A 1Y1VA 1E18A 3GTMA 3HU1A 1OGYA 1WLFA 3H0GA 2NAPA 2VPWA 3GTOA 3ML1A 2C45A 2E7ZA 3GTJA 1PT0A 1DMRA 1DMSA 1AA6A 2KI8A 3IR7A 5DYIA 3GTLA 3GTQA 2NVYA 1E32A 2V45A 1Y4ZA 3O5AA 3GTGA 2R93A 1Y5IA 3QQ8A 1TWAA 1AW8B 5EPPA 5FTLA 1R7RA 3HU3A 1SFOA 3FKIA 1I50A 2JIMA 2JA7A 1UHEA 2NYAA 2YU9A 3PLXB 2IV2X 1QDNA 1PYUB 4QIWA 3HKZA 1TWHA 3QC8A 5T5MD 1PQHA 2PJHB 1UHDA 4GA5A 1WCMA 2JV2A 4AONB 2JA5A 5B6CA 4CRZA 2DMRA 3TM7B 1G8KA 3QWZA 4AOKB 1Q16A 2VUMA 1TWGA 1ZC1A 1G8JA 1FDIA 1TWCA 1PQFA 1YLEA 1H0HA 1PQEA 1R27A 5FTJA 1E60A 1VC3B 1TMOA 4AZDA 1KQFA 3IR6A 1PPYA 2JIRA 1TWFA 4GA6A 5C18A 2E2IA 2EEOB 1SIWA 2R92A 1PYQA 2WAQA 2V3VA 5FTKA 3GTKA 1CZ4A 4D7ZB 3GTPA 4CS0A 1E61A 2YUJA 4RV0A 4KLNA 4AAYA 2JIPA 1R9TA 5FTNA 2WB1A 4CRYG 1IW7D 2E2HA
chains in the Genus database with same CATH superfamily
3HU2A 1Y1WA 3CQZA 4C2MA 4ENGA 5DYGA 3OUGA 3DMRA 4DMRA 3TIWA 5ERGB 4KDIA 1I9GA 4KODA 5GLFA 2PWYA 3FPTA 3X2JA 3ZJUA 1OA7A 4NOHA 5T5ID 3X2KA 2CW0D 4FIBA 4JCWA 1H5NA 4FG2A 3X2LA 1QCSA 3CF2A 3ENGA 1PT1A 4AYBA 1FDOA 1CR5A 1ZYRD 2Y0SA 5C1BA 1S3SA 1KQGA 2G6GA 3X2MA 1L8FA 2PNWA 2PMZA 5FTMA 3IR5A 4CQNA 4L48A 2GF7A 2VPXA 1E5VA 4JJOA 2VPZA 4ZM7A 2JIQA 1K83A 2R7ZA 3SUKA 2BH0A 2XDPA 4KDLA 4AS1A 2VPYA 3M3GA 1EU1A 2JIOA 4JS7A 2B63A 2NVXA 5GLYA 1I3QA 3ZJVA 5GM9A 5CCBA 3X2HA 3QQ7A 2JA6A 1CZ5A 4KO8A 1Y1VA 1E18A 1YNJD 3GTMA 3HU1A 2G5DA 2KY9A 1OGYA 3SUJA 1WLFA 3ZGZA 3H0GA 3SUMA 2NAPA 2YVLA 2MM0A 2AE0X 3MB5A 2VPWA 3X2NA 2PICA 5CCXA 3GTOA 3ML1A 2QQSA 2C45A 2E7ZA 3BQBA 4AVRA 5D6YA 2HCZX 3GTJA 1BW4A 1PT0A 1DMRA 1DMSA 1AA6A 2KI8A 3IR7A 2Q18X 5DYIA 3GTLA 3GTQA 2NVYA 1E32A 2V45A 1Y4ZA 3O5AA 3GTGA 2R93A 1SMYD 2Q19X 4FERA 2Q1DX 1Y5IA 3QQ8A 1TWAA 1AW8B 5EPPA 5FTLA 1R7RA 3HU3A 2Q1CX 1SFOA 3LHDA 3FKIA 4JP6A 1I50A 3CZBA 2JIMA 2JA7A 1UHEA 2NYAA 4JP7A 2QQRA 2YU9A 3X2OA 3X2GA 3PLXB 2IV2X 3D30A 1QDNA 5CD1A 1PYUB 4QIWA 3HKZA 1TWHA 3FPUA 2PJJA 3X2IA 5EQJB 3QC8A 4FFTA 5T5MD 2BE5D 1PQHA 2PJHB 1UHDA 4GA5A 1WCMA 2JV2A 2A6ED 4AONB 1BW3A 1HD5A 2JA5A 5B6CA 4CRZA 2DMRA 2KQAA 2GAEA 1G8KA 3TM7B 2O5JD 3QWZA 4AOKB 1Q16A 2VUMA 1O54A 2MM2A 1TWGA 4UC4A 1ZC1A 1YNND 1G8JA 1FDIA 4ARCA 1TWCA 2Q1AX 1PQFA 5D6WA 2A69D 1YLEA 1H0HA 3LGAA 1PQEA 1R27A 4FG4A 5FTJA 2GFAA 3ZJTA 1E60A 1VC3B 1TMOA 4AZDA 1KQFA 3IR6A 1PPYA 2JIRA 1TWFA 4GA6A 5C18A 2E2IA 2EEOB 1SIWA 2R92A 1PYQA 2B25A 2WAQA 2V3VA 5FTKA 3GTKA 3FPRA 1CZ4A 5D6XA 4D7ZB 3GTPA 1OA9A 1WC2A 2ENGA 5H4UA 1E61A 4CS0A 4AQ7A 5GLXA 2A68D 2YUJA 4RV0A 4KLNA 4AAYA 2JIPA 3X2PA 5FTNA 2A6HD 3SULA 1R9TA 2LW6A 2WB1A 2PI8A 4CRYG 1IW7D 4ARIA 1N10A 2E2HA
chains in the Genus database with same CATH topology
3HU2A 1Y1WA 3CQZA 4C2MA 4DMRA 5DYGA 3OUGA 3DMRA 5ERGB 3TIWA 4KDIA 1I9GA 4KODA 5GLFA 2PWYA 3FPTA 3ZJUA 4NOHA 5T5ID 2CW0D 4FIBA 1H5NA 1QCSA 3CF2A 1PT1A 4AYBA 1FDOA 1CR5A 1ZYRD 2Y0SA 5C1BA 1S3SA 1KQGA 2G6GA 2PNWA 2PMZA 5FTMA 3IR5A 4CQNA 2GF7A 2VPXA 1E5VA 2VPZA 2R7ZA 2JIQA 1K83A 2XDPA 4KDLA 4AS1A 2VPYA 1EU1A 2JIOA 2B63A 2NVXA 1I3QA 3ZJVA 5CCBA 2JA6A 3QQ7A 1CZ5A 4KO8A 1Y1VA 1E18A 1YNJD 3GTMA 3HU1A 2G5DA 2KY9A 1OGYA 1WLFA 3ZGZA 3H0GA 2YVLA 2NAPA 2MM0A 2AE0X 3MB5A 2VPWA 2PICA 5CCXA 3GTOA 3ML1A 2QQSA 2C45A 2E7ZA 3BQBA 5D6YA 3GTJA 1PT0A 1DMRA 1DMSA 1AA6A 2KI8A 3IR7A 2Q18X 5DYIA 3GTLA 3GTQA 2NVYA 1E32A 2V45A 1Y4ZA 3O5AA 3GTGA 2R93A 1SMYD 2Q19X 2Q1DX 1Y5IA 3QQ8A 1TWAA 1AW8B 5EPPA 5FTLA 1R7RA 3HU3A 2Q1CX 1SFOA 3LHDA 3FKIA 1I50A 3CZBA 2JIMA 2JA7A 1UHEA 2NYAA 2QQRA 2YU9A 3PLXB 2IV2X 1QDNA 5CD1A 1PYUB 4QIWA 3HKZA 1TWHA 3FPUA 2PJJA 5EQJB 3QC8A 5T5MD 2BE5D 1PQHA 2PJHB 1UHDA 4GA5A 1WCMA 2JV2A 2A6ED 4AONB 2JA5A 5B6CA 4CRZA 2DMRA 2GAEA 1G8KA 3TM7B 2O5JD 3QWZA 4AOKB 1Q16A 2VUMA 1O54A 2MM2A 1TWGA 4UC4A 1ZC1A 1YNND 1G8JA 1FDIA 4ARCA 1TWCA 2Q1AX 1PQFA 5D6WA 2A69D 1YLEA 1H0HA 3LGAA 1PQEA 1R27A 2GFAA 5FTJA 3ZJTA 1E60A 1VC3B 1TMOA 4AZDA 1KQFA 3IR6A 1PPYA 2JIRA 1TWFA 4GA6A 5C18A 2E2IA 2EEOB 1SIWA 2R92A 1PYQA 2B25A 2WAQA 2V3VA 5FTKA 3GTKA 3FPRA 1CZ4A 5D6XA 4D7ZB 3GTPA 4AQ7A 4CS0A 1E61A 2A68D 2YUJA 4RV0A 4KLNA 4AAYA 2JIPA 1R9TA 5FTNA 2A6HD 2LW6A 2WB1A 2PI8A 4CRYG 1IW7D 4ARIA 2E2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HU2 A;  1Y1W A;  3CQZ A;  4C2M A;  4DMR A;  5DYG A;  3OUG A;  3DMR A;  3TIW A;  4KDI A;  4KOD A;  5GLF A;  5T5I D;  1H5N A;  1QCS A;  3CF2 A;  1PT1 A;  4AYB A;  1FDO A;  1CR5 A;  5C1B A;  2Y0S A;  1KQG A;  1S3S A;  2PMZ A;  5FTM A;  3IR5 A;  2VPX A;  1E5V A;  2VPZ A;  2R7Z A;  2JIQ A;  1K83 A;  4KDL A;  2VPY A;  1EU1 A;  2JIO A;  2B63 A;  2NVX A;  1I3Q A;  2JA6 A;  3QQ7 A;  1CZ5 A;  4KO8 A;  1Y1V A;  1E18 A;  3GTM A;  3HU1 A;  1OGY A;  1WLF A;  3H0G A;  2NAP A;  2VPW A;  3GTO A;  3ML1 A;  2C45 A;  2E7Z A;  3GTJ A;  1PT0 A;  1DMR A;  1DMS A;  1AA6 A;  2KI8 A;  3IR7 A;  5DYI A;  3GTL A;  3GTQ A;  2NVY A;  1E32 A;  2V45 A;  1Y4Z A;  3O5A A;  3GTG A;  2R93 A;  1Y5I A;  3QQ8 A;  1TWA A;  1AW8 B;  5EPP A;  5FTL A;  1R7R A;  3HU3 A;  1SFO A;  3FKI A;  1I50 A;  2JIM A;  2JA7 A;  1UHE A;  2NYA A;  2YU9 A;  3PLX B;  2IV2 X;  1QDN A;  1PYU B;  4QIW A;  3HKZ A;  1TWH A;  3QC8 A;  5T5M D;  1PQH A;  2PJH B;  1UHD A;  4GA5 A;  1WCM A;  2JV2 A;  4AON B;  2JA5 A;  5B6C A;  4CRZ A;  2DMR A;  3TM7 B;  1G8K A;  3QWZ A;  4AOK B;  1Q16 A;  2VUM A;  1TWG A;  1ZC1 A;  1G8J A;  1FDI A;  1TWC A;  1PQF A;  1YLE A;  1H0H A;  1PQE A;  1R27 A;  5FTJ A;  1E60 A;  1VC3 B;  1TMO A;  4AZD A;  1KQF A;  3IR6 A;  1PPY A;  2JIR A;  1TWF A;  4GA6 A;  5C18 A;  2E2I A;  2EEO B;  1SIW A;  2R92 A;  1PYQ A;  2WAQ A;  2V3V A;  5FTK A;  3GTK A;  1CZ4 A;  4D7Z B;  3GTP A;  4CS0 A;  1E61 A;  2YUJ A;  4RV0 A;  4KLN A;  4AAY A;  2JIP A;  1R9T A;  5FTN A;  2WB1 A;  4CRY G;  1IW7 D;  2E2H A; 
#chains in the Genus database with same CATH topology
 3HU2 A;  1Y1W A;  3CQZ A;  4C2M A;  4ENG A;  5DYG A;  3OUG A;  3DMR A;  4DMR A;  3TIW A;  5ERG B;  4KDI A;  1I9G A;  4KOD A;  5GLF A;  2PWY A;  3FPT A;  3X2J A;  3ZJU A;  1OA7 A;  4NOH A;  5T5I D;  3X2K A;  2CW0 D;  4FIB A;  4JCW A;  1H5N A;  4FG2 A;  3X2L A;  1QCS A;  3CF2 A;  3ENG A;  1PT1 A;  4AYB A;  1FDO A;  1CR5 A;  1ZYR D;  2Y0S A;  5C1B A;  1S3S A;  1KQG A;  2G6G A;  3X2M A;  1L8F A;  2PNW A;  2PMZ A;  5FTM A;  3IR5 A;  4CQN A;  4L48 A;  2GF7 A;  2VPX A;  1E5V A;  4JJO A;  2VPZ A;  4ZM7 A;  2JIQ A;  1K83 A;  2R7Z A;  3SUK A;  2BH0 A;  2XDP A;  4KDL A;  4AS1 A;  2VPY A;  3M3G A;  1EU1 A;  2JIO A;  4JS7 A;  2B63 A;  2NVX A;  5GLY A;  1I3Q A;  3ZJV A;  5GM9 A;  5CCB A;  3X2H A;  3QQ7 A;  2JA6 A;  1CZ5 A;  4KO8 A;  1Y1V A;  1E18 A;  1YNJ D;  3GTM A;  3HU1 A;  2G5D A;  2KY9 A;  1OGY A;  3SUJ A;  1WLF A;  3ZGZ A;  3H0G A;  3SUM A;  2NAP A;  2YVL A;  2MM0 A;  2AE0 X;  3MB5 A;  2VPW A;  3X2N A;  2PIC A;  5CCX A;  3GTO A;  3ML1 A;  2QQS A;  2C45 A;  2E7Z A;  3BQB A;  4AVR A;  5D6Y A;  2HCZ X;  3GTJ A;  1BW4 A;  1PT0 A;  1DMR A;  1DMS A;  1AA6 A;  2KI8 A;  3IR7 A;  2Q18 X;  5DYI A;  3GTL A;  3GTQ A;  2NVY A;  1E32 A;  2V45 A;  1Y4Z A;  3O5A A;  3GTG A;  2R93 A;  1SMY D;  2Q19 X;  4FER A;  2Q1D X;  1Y5I A;  3QQ8 A;  1TWA A;  1AW8 B;  5EPP A;  5FTL A;  1R7R A;  3HU3 A;  2Q1C X;  1SFO A;  3LHD A;  3FKI A;  4JP6 A;  1I50 A;  3CZB A;  2JIM A;  2JA7 A;  1UHE A;  2NYA A;  4JP7 A;  2QQR A;  2YU9 A;  3X2O A;  3X2G A;  3PLX B;  2IV2 X;  3D30 A;  1QDN A;  5CD1 A;  1PYU B;  4QIW A;  3HKZ A;  1TWH A;  3FPU A;  2PJJ A;  3X2I A;  5EQJ B;  3QC8 A;  4FFT A;  5T5M D;  2BE5 D;  1PQH A;  2PJH B;  1UHD A;  4GA5 A;  1WCM A;  2JV2 A;  2A6E D;  4AON B;  1BW3 A;  1HD5 A;  2JA5 A;  5B6C A;  4CRZ A;  2DMR A;  2KQA A;  2GAE A;  1G8K A;  3TM7 B;  2O5J D;  3QWZ A;  4AOK B;  1Q16 A;  2VUM A;  1O54 A;  2MM2 A;  1TWG A;  4UC4 A;  1ZC1 A;  1YNN D;  1G8J A;  1FDI A;  4ARC A;  1TWC A;  2Q1A X;  1PQF A;  5D6W A;  2A69 D;  1YLE A;  1H0H A;  3LGA A;  1PQE A;  1R27 A;  4FG4 A;  5FTJ A;  2GFA A;  3ZJT A;  1E60 A;  1VC3 B;  1TMO A;  4AZD A;  1KQF A;  3IR6 A;  1PPY A;  2JIR A;  1TWF A;  4GA6 A;  5C18 A;  2E2I A;  2EEO B;  1SIW A;  2R92 A;  1PYQ A;  2B25 A;  2WAQ A;  2V3V A;  5FTK A;  3GTK A;  3FPR A;  1CZ4 A;  5D6X A;  4D7Z B;  3GTP A;  1OA9 A;  1WC2 A;  2ENG A;  5H4U A;  1E61 A;  4CS0 A;  4AQ7 A;  5GLX A;  2A68 D;  2YUJ A;  4RV0 A;  4KLN A;  4AAY A;  2JIP A;  3X2P A;  5FTN A;  2A6H D;  3SUL A;  1R9T A;  2LW6 A;  2WB1 A;  2PI8 A;  4CRY G;  1IW7 D;  4ARI A;  1N10 A;  2E2H A; 
#chains in the Genus database with same CATH homology
 3HU2 A;  1Y1W A;  3CQZ A;  4C2M A;  4DMR A;  5DYG A;  3OUG A;  3DMR A;  5ERG B;  3TIW A;  4KDI A;  1I9G A;  4KOD A;  5GLF A;  2PWY A;  3FPT A;  3ZJU A;  4NOH A;  5T5I D;  2CW0 D;  4FIB A;  1H5N A;  1QCS A;  3CF2 A;  1PT1 A;  4AYB A;  1FDO A;  1CR5 A;  1ZYR D;  2Y0S A;  5C1B A;  1S3S A;  1KQG A;  2G6G A;  2PNW A;  2PMZ A;  5FTM A;  3IR5 A;  4CQN A;  2GF7 A;  2VPX A;  1E5V A;  2VPZ A;  2R7Z A;  2JIQ A;  1K83 A;  2XDP A;  4KDL A;  4AS1 A;  2VPY A;  1EU1 A;  2JIO A;  2B63 A;  2NVX A;  1I3Q A;  3ZJV A;  5CCB A;  2JA6 A;  3QQ7 A;  1CZ5 A;  4KO8 A;  1Y1V A;  1E18 A;  1YNJ D;  3GTM A;  3HU1 A;  2G5D A;  2KY9 A;  1OGY A;  1WLF A;  3ZGZ A;  3H0G A;  2YVL A;  2NAP A;  2MM0 A;  2AE0 X;  3MB5 A;  2VPW A;  2PIC A;  5CCX A;  3GTO A;  3ML1 A;  2QQS A;  2C45 A;  2E7Z A;  3BQB A;  5D6Y A;  3GTJ A;  1PT0 A;  1DMR A;  1DMS A;  1AA6 A;  2KI8 A;  3IR7 A;  2Q18 X;  5DYI A;  3GTL A;  3GTQ A;  2NVY A;  1E32 A;  2V45 A;  1Y4Z A;  3O5A A;  3GTG A;  2R93 A;  1SMY D;  2Q19 X;  2Q1D X;  1Y5I A;  3QQ8 A;  1TWA A;  1AW8 B;  5EPP A;  5FTL A;  1R7R A;  3HU3 A;  2Q1C X;  1SFO A;  3LHD A;  3FKI A;  1I50 A;  3CZB A;  2JIM A;  2JA7 A;  1UHE A;  2NYA A;  2QQR A;  2YU9 A;  3PLX B;  2IV2 X;  1QDN A;  5CD1 A;  1PYU B;  4QIW A;  3HKZ A;  1TWH A;  3FPU A;  2PJJ A;  5EQJ B;  3QC8 A;  5T5M D;  2BE5 D;  1PQH A;  2PJH B;  1UHD A;  4GA5 A;  1WCM A;  2JV2 A;  2A6E D;  4AON B;  2JA5 A;  5B6C A;  4CRZ A;  2DMR A;  2GAE A;  1G8K A;  3TM7 B;  2O5J D;  3QWZ A;  4AOK B;  1Q16 A;  2VUM A;  1O54 A;  2MM2 A;  1TWG A;  4UC4 A;  1ZC1 A;  1YNN D;  1G8J A;  1FDI A;  4ARC A;  1TWC A;  2Q1A X;  1PQF A;  5D6W A;  2A69 D;  1YLE A;  1H0H A;  3LGA A;  1PQE A;  1R27 A;  2GFA A;  5FTJ A;  3ZJT A;  1E60 A;  1VC3 B;  1TMO A;  4AZD A;  1KQF A;  3IR6 A;  1PPY A;  2JIR A;  1TWF A;  4GA6 A;  5C18 A;  2E2I A;  2EEO B;  1SIW A;  2R92 A;  1PYQ A;  2B25 A;  2WAQ A;  2V3V A;  5FTK A;  3GTK A;  3FPR A;  1CZ4 A;  5D6X A;  4D7Z B;  3GTP A;  4AQ7 A;  4CS0 A;  1E61 A;  2A68 D;  2YUJ A;  4RV0 A;  4KLN A;  4AAY A;  2JIP A;  1R9T A;  5FTN A;  2A6H D;  2LW6 A;  2WB1 A;  2PI8 A;  4CRY G;  1IW7 D;  4ARI A;  2E2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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