1D1RA

Nmr solution structure of the product of the e. coli ycih gene.
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
83
structure length
83
Chain Sequence
KGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLAGGLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics
molecule keywords HYPOTHETICAL 11.4 KD PROTEIN YCIH IN PYRF-OSMB INTERGENIC RE
publication title A phylogenetic approach to target selection for structural genomics: solution structure of YciH.
pubmed doi rcsb
source organism Escherichia coli
total genus 11
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 1999-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01253 SUI1 Translation initiation factor SUI1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.780.10 Alpha Beta 2-Layer Sandwich Translation Initiation Factor Eif1 SUI1-like domain 1d1rA00
2RVHA 2OGHA 1D1RA 2IF1A 4MO0A 4V1Al 3J80j 3J7Yg 3JAMj 3J81m
chains in the Genus database with same CATH superfamily
2OCAA 2RVHA 2OGHA 1D1RA 2IF1A 1RIFA 4MO0A 4V1Al 2KX2A 3J80j 3J7Yg 3JAMj 3J81m
chains in the Genus database with same CATH topology
2RVHA 2OGHA 1D1RA 2IF1A 4MO0A 4V1Al 3J80j 3J7Yg 3JAMj 3J81m
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RVH A;  2OGH A;  1D1R A;  2IF1 A;  4MO0 A;  4V1A l;  3J80 j;  3J7Y g;  3JAM j;  3J81 m; 
#chains in the Genus database with same CATH topology
 2OCA A;  2RVH A;  2OGH A;  1D1R A;  2IF1 A;  1RIF A;  4MO0 A;  4V1A l;  2KX2 A;  3J80 j;  3J7Y g;  3JAM j;  3J81 m; 
#chains in the Genus database with same CATH homology
 2RVH A;  2OGH A;  1D1R A;  2IF1 A;  4MO0 A;  4V1A l;  3J80 j;  3J7Y g;  3JAM j;  3J81 m; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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