1DABA

The structure of bordetella pertussis virulence factor p.69 pertactin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
539
structure length
539
Chain Sequence
DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords P.69 PERTACTIN
publication title Structure of Bordetella pertussis virulence factor P.69 pertactin.
pubmed doi rcsb
source organism Bordetella pertussis
total genus 182
structure length 539
sequence length 539
ec nomenclature
pdb deposition date 1999-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1dabA00
1CLWA 1QA3A 3SYJA 3TH0A 1TYVA 2VFNA 1QA1A 3RIQA 1TYUA 2VFOA 1QRCA 3ML3A 1QQ1A 2IOUG 3H09A 2V5IA 2VFQA 2XC1A 1DABA 1TSPA 1TYWA 4OM9A 3AK5A 2VFPA 1TYXA 1QRBA 2VFMA 3SZEA 1QA2A 4KH3A 1WXRA
chains in the Genus database with same CATH superfamily
1CLWA 1EZGA 3P4GA 2J8KA 3TH0A 4W8SA 2UVEA 2NSTA 4W8TA 4XL9A 3LYCA 4YCQA 4OPWA 1TYVA 4V02C 4OJ5A 1RU4A 4XQFA 4NK6A 1H80A 2INVA 1O8LA 1QRCA 4XLAA 4OZZA 2XT2A 4XR6A 3KRGA 2PYGA 2IOUG 2UVFA 3DU1X 1OOCA 2INUA 3H09A 2V5IA 4YELA 2VFQA 4AVZA 3PSSA 4PMHA 1LLZA 2QYUA 4OZYA 4YFOA 1KCCA 1O8MA 2NT6A 2X6WA 3VSUA 2NTQA 2XTWA 4XONA 3FY3A 1BHEA 3JURA 3AK5A 2VFMA 4YDTA 3B90A 2BM5A 3VSVA 3WWGA 1OFLA 1K5CA 3SQVA 2NTBA 1OFEA 1HG8A 1WXRA 1OFDA 2PYHA 4OJLA 3GRHA 4Z06A 1QA3A 1JRGA 1PXZA 4W8RA 1OGOX 4XLEA 2O6WA 4MR0A 4XLFA 4Z03A 2NTPA 1L1IA 3UW0A 3RIQA 1QA1A 4W8QA 2VFOA 2W7ZA 1PLUA 2XT4A 4XNFA 1O8GA 2X6YA 2NT9A 2G0YA 1EE6A 1IA5A 4XORA 1KQ5A 4EW9A 3NB2A 1BN8A 1TSPA 1OFMA 3GQ7A 4OJOA 4U49A 4YZAA 4XM3A 1TYWA 3T9GA 4XLHA 1RWRA 2VFPA 1O8HA 1TYXA 2PECA 2QXZA 3EQOA 2VJJA 2QZAA 3GQ9A 4Z05A 3VMWA 3ZSCA 1QA2A 1WMRA 5JMCB 1EA0A 4XKWA 3N90A 4C2LA 3SYJA 2VBEA 4XN3A 1O8JA 1PE9A 4YC5A 1HF2A 3VSTA 2XTYA 4OJPA 2O1DA 2BM6A 2VFNA 1QJVA 5AMVA 3VMVA 2O04A 1TYUA 4I84A 4NK8A 1RMGA 2X6XA 3ML3A 4YZ0A 3B4NA 2BSPA 2VBKA 2O17A 3N6ZA 4XOPA 1KCDA 3BH6B 1DABA 2VJIA 1O8KA 3LJYA 2ODLA 1DBOA 4JRAC 5C1EA 1IDJA 4HWVA 1O8EA 2NSPA 3GQ8A 4U4BA 3SY2A 3GQAA 3PETA 2XTXA 1XG2A 3SZEA 4YZXA 1O8DA 1IDKA 2X3HA 4XLCA 1O8IA 3LMWA 1AIRA 1LM1A 4OJ6A 2Z8GA 4YEJA 1CZFA 1OGMX 1X0CA 4XMYA 2QY1A 1QCXA 2B0RA 2F3LA 1O8FA 2X85A 3ZPPA 4URRA 1NHCA 5DNSA 4XKVA 4XOTA 1K4ZA 2O0WA 1K8FA 4XN0A 1GQ8A 5C1CA 2YUHA 1QQ1A 3PSZA 1VBLA 4YEIA 5JLVC 2VBMA 2BM4A 2BX6A 2EWEA 1LLWA 3EQNA 3JX8A 4MXNA 4YZQA 2XC1A 1KTWA 2IQ7A 2QX3A 2J8IA 1IB4A 1DBGA 4OM9A 1JTAA 3NAWA 3SUCA 1QRBA 2BM7A 1O88A 2O0VA 2NZMA 3B8YA 3BH7B 4KH3A
chains in the Genus database with same CATH topology
1CLWA 3N90A 3P4GA 4OJLA 3SYJA 1QA3A 4OJ6A 3TH0A 1HF2A 4OJPA 3LYCA 4OPWA 2B0RA 1TYVA 2BM6A 2F3LA 4V02C 2VFNA 4OJ5A 1QA1A 3RIQA 1TYUA 2VFOA 2W7ZA 1K4ZA 1K8FA 1QRCA 2G0YA 3ML3A 2YUHA 1QQ1A 2IOUG 5JLVC 3N6ZA 2BM4A 2BX6A 1KQ5A 2V5IA 2VFQA 3H09A 3JX8A 2XC1A 3BH6B 1DABA 1TSPA 3LJYA 4JRAC 4OJOA 2J8IA 1TYWA 4OM9A 3AK5A 2VFPA 1TYXA 1WXRA 1QRBA 2VFMA 2BM7A 2BM5A 3PETA 3SZEA 1QA2A 3BH7B 4KH3A 5JMCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CLW A;  1QA3 A;  3SYJ A;  3TH0 A;  1TYV A;  2VFN A;  1QA1 A;  3RIQ A;  1TYU A;  2VFO A;  1QRC A;  3ML3 A;  1QQ1 A;  2IOU G;  3H09 A;  2V5I A;  2VFQ A;  2XC1 A;  1DAB A;  1TSP A;  1TYW A;  4OM9 A;  3AK5 A;  2VFP A;  1TYX A;  1QRB A;  2VFM A;  3SZE A;  1QA2 A;  4KH3 A;  1WXR A; 
#chains in the Genus database with same CATH topology
 1CLW A;  1EZG A;  3P4G A;  2J8K A;  3TH0 A;  4W8S A;  2UVE A;  2NST A;  4W8T A;  4XL9 A;  3LYC A;  4YCQ A;  4OPW A;  1TYV A;  4V02 C;  4OJ5 A;  1RU4 A;  4XQF A;  4NK6 A;  1H80 A;  2INV A;  1O8L A;  1QRC A;  4XLA A;  4OZZ A;  2XT2 A;  4XR6 A;  3KRG A;  2PYG A;  2IOU G;  2UVF A;  3DU1 X;  1OOC A;  2INU A;  3H09 A;  2V5I A;  4YEL A;  2VFQ A;  4AVZ A;  3PSS A;  4PMH A;  1LLZ A;  2QYU A;  4OZY A;  4YFO A;  1KCC A;  1O8M A;  2NT6 A;  2X6W A;  3VSU A;  2NTQ A;  2XTW A;  4XON A;  3FY3 A;  1BHE A;  3JUR A;  3AK5 A;  2VFM A;  4YDT A;  3B90 A;  2BM5 A;  3VSV A;  3WWG A;  1OFL A;  1K5C A;  3SQV A;  2NTB A;  1OFE A;  1HG8 A;  1WXR A;  1OFD A;  2PYH A;  4OJL A;  3GRH A;  4Z06 A;  1QA3 A;  1JRG A;  1PXZ A;  4W8R A;  1OGO X;  4XLE A;  2O6W A;  4MR0 A;  4XLF A;  4Z03 A;  2NTP A;  1L1I A;  3UW0 A;  3RIQ A;  1QA1 A;  4W8Q A;  2VFO A;  2W7Z A;  1PLU A;  2XT4 A;  4XNF A;  1O8G A;  2X6Y A;  2NT9 A;  2G0Y A;  1EE6 A;  1IA5 A;  4XOR A;  1KQ5 A;  4EW9 A;  3NB2 A;  1BN8 A;  1TSP A;  1OFM A;  3GQ7 A;  4OJO A;  4U49 A;  4YZA A;  4XM3 A;  1TYW A;  3T9G A;  4XLH A;  1RWR A;  2VFP A;  1O8H A;  1TYX A;  2PEC A;  2QXZ A;  3EQO A;  2VJJ A;  2QZA A;  3GQ9 A;  4Z05 A;  3VMW A;  3ZSC A;  1QA2 A;  1WMR A;  5JMC B;  1EA0 A;  4XKW A;  3N90 A;  4C2L A;  3SYJ A;  2VBE A;  4XN3 A;  1O8J A;  1PE9 A;  4YC5 A;  1HF2 A;  3VST A;  2XTY A;  4OJP A;  2O1D A;  2BM6 A;  2VFN A;  1QJV A;  5AMV A;  3VMV A;  2O04 A;  1TYU A;  4I84 A;  4NK8 A;  1RMG A;  2X6X A;  3ML3 A;  4YZ0 A;  3B4N A;  2BSP A;  2VBK A;  2O17 A;  3N6Z A;  4XOP A;  1KCD A;  3BH6 B;  1DAB A;  2VJI A;  1O8K A;  3LJY A;  2ODL A;  1DBO A;  4JRA C;  5C1E A;  1IDJ A;  4HWV A;  1O8E A;  2NSP A;  3GQ8 A;  4U4B A;  3SY2 A;  3GQA A;  3PET A;  2XTX A;  1XG2 A;  3SZE A;  4YZX A;  1O8D A;  1IDK A;  2X3H A;  4XLC A;  1O8I A;  3LMW A;  1AIR A;  1LM1 A;  4OJ6 A;  2Z8G A;  4YEJ A;  1CZF A;  1OGM X;  1X0C A;  4XMY A;  2QY1 A;  1QCX A;  2B0R A;  2F3L A;  1O8F A;  2X85 A;  3ZPP A;  4URR A;  1NHC A;  5DNS A;  4XKV A;  4XOT A;  1K4Z A;  2O0W A;  1K8F A;  4XN0 A;  1GQ8 A;  5C1C A;  2YUH A;  1QQ1 A;  3PSZ A;  1VBL A;  4YEI A;  5JLV C;  2VBM A;  2BM4 A;  2BX6 A;  2EWE A;  1LLW A;  3EQN A;  3JX8 A;  4MXN A;  4YZQ A;  2XC1 A;  1KTW A;  2IQ7 A;  2QX3 A;  2J8I A;  1IB4 A;  1DBG A;  4OM9 A;  1JTA A;  3NAW A;  3SUC A;  1QRB A;  2BM7 A;  1O88 A;  2O0V A;  2NZM A;  3B8Y A;  3BH7 B;  4KH3 A; 
#chains in the Genus database with same CATH homology
 1CLW A;  3N90 A;  3P4G A;  4OJL A;  3SYJ A;  1QA3 A;  4OJ6 A;  3TH0 A;  1HF2 A;  4OJP A;  3LYC A;  4OPW A;  2B0R A;  1TYV A;  2BM6 A;  2F3L A;  4V02 C;  2VFN A;  4OJ5 A;  1QA1 A;  3RIQ A;  1TYU A;  2VFO A;  2W7Z A;  1K4Z A;  1K8F A;  1QRC A;  2G0Y A;  3ML3 A;  2YUH A;  1QQ1 A;  2IOU G;  5JLV C;  3N6Z A;  2BM4 A;  2BX6 A;  1KQ5 A;  2V5I A;  2VFQ A;  3H09 A;  3JX8 A;  2XC1 A;  3BH6 B;  1DAB A;  1TSP A;  3LJY A;  4JRA C;  4OJO A;  2J8I A;  1TYW A;  4OM9 A;  3AK5 A;  2VFP A;  1TYX A;  1WXR A;  1QRB A;  2VFM A;  2BM7 A;  2BM5 A;  3PET A;  3SZE A;  1QA2 A;  3BH7 B;  4KH3 A;  5JMC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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